Wall clock time and date at job start Wed Apr 1 2020 05:15:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35671 * 116.99854 * 2 1
4 4 N 1.32276 * 119.68900 * 359.97438 * 3 2 1
5 5 C 1.31933 * 121.65230 * 180.02562 * 4 3 2
6 6 C 1.38088 * 120.83259 * 359.97438 * 5 4 3
7 7 C 1.38793 * 119.28659 * 359.73491 * 6 5 4
8 8 C 1.38419 * 118.48323 * 0.52663 * 7 6 5
9 9 C 1.50704 * 120.44328 * 179.73529 * 8 7 6
10 10 N 1.46499 * 109.47090 * 259.72819 * 9 8 7
11 11 C 1.34775 * 119.99505 * 179.97438 * 10 9 8
12 12 O 1.21352 * 120.00141 * 359.97438 * 11 10 9
13 13 C 1.49448 * 119.99800 * 180.02562 * 11 10 9
14 14 O 1.21344 * 120.00308 * 353.23338 * 13 11 10
15 15 N 1.34784 * 120.00133 * 173.23049 * 13 11 10
16 16 C 1.46929 * 120.62828 * 351.35143 * 15 13 11
17 17 C 1.53191 * 108.89438 * 233.55930 * 16 15 13
18 18 C 1.53070 * 109.29330 * 305.58156 * 17 16 15
19 19 C 1.53040 * 109.66092 * 61.15257 * 18 17 16
20 20 H 1.09000 * 109.49788 * 58.65045 * 19 18 17
21 21 C 1.50699 * 109.49627 * 178.74544 * 19 18 17
22 22 H 1.07993 * 120.00318 * 359.84311 * 21 19 18
23 23 C 1.37881 * 120.00047 * 179.83697 * 21 19 18
24 24 N 1.31523 * 119.99840 * 0.02562 * 23 21 19
25 25 Si 1.86793 * 120.00310 * 180.02562 * 23 21 19
26 26 H 1.48493 * 109.47250 * 60.00246 * 25 23 21
27 27 H 1.48503 * 109.47339 * 180.02562 * 25 23 21
28 28 H 1.48505 * 109.46979 * 299.99914 * 25 23 21
29 29 C 1.46924 * 120.63092 * 171.37996 * 15 13 11
30 30 H 1.09002 * 109.47490 * 299.99804 * 1 2 3
31 31 H 1.09001 * 109.47230 * 60.00151 * 1 2 3
32 32 H 1.09005 * 109.47522 * 180.02562 * 1 2 3
33 33 H 1.08005 * 119.58495 * 179.97438 * 5 4 3
34 34 H 1.07999 * 120.35655 * 180.02562 * 6 5 4
35 35 H 1.07993 * 120.75749 * 180.28986 * 7 6 5
36 36 H 1.08995 * 109.46665 * 139.72965 * 9 8 7
37 37 H 1.09002 * 109.46302 * 19.72795 * 9 8 7
38 38 H 0.96995 * 120.00359 * 0.02562 * 10 9 8
39 39 H 1.09001 * 109.58364 * 353.42154 * 16 15 13
40 40 H 1.08998 * 109.58185 * 113.69820 * 16 15 13
41 41 H 1.09001 * 109.49476 * 65.38778 * 17 16 15
42 42 H 1.08999 * 109.49901 * 185.48778 * 17 16 15
43 43 H 1.09002 * 109.35068 * 301.12365 * 18 17 16
44 44 H 1.09002 * 109.44049 * 181.23616 * 18 17 16
45 45 H 0.96998 * 120.00395 * 179.97438 * 24 23 21
46 46 H 1.09006 * 109.57806 * 246.15416 * 29 15 13
47 47 H 1.09000 * 109.58866 * 6.43300 * 29 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2089 0.0000
4 7 1.3184 2.3143 -0.0005
5 6 1.8767 3.5096 -0.0010
6 6 3.2505 3.6491 -0.0005
7 6 4.0483 2.5134 0.0061
8 6 3.4322 1.2739 0.0009
9 6 4.2557 0.0118 0.0018
10 7 4.3221 -0.5289 -1.3582
11 6 5.0110 -1.6618 -1.5999
12 8 5.5765 -2.2337 -0.6912
13 6 5.0792 -2.2132 -2.9873
14 8 4.4165 -1.7131 -3.8723
15 7 5.8770 -3.2659 -3.2557
16 6 6.8243 -3.7632 -2.2486
17 6 8.2243 -3.8164 -2.8681
18 6 8.1771 -4.6450 -4.1543
19 6 7.2267 -3.9861 -5.1566
20 1 7.5671 -2.9726 -5.3687
21 6 7.2066 -4.7878 -6.4325
22 1 7.8131 -5.6770 -6.5212
23 6 6.4138 -4.3862 -7.4867
24 7 5.6755 -3.3031 -7.3789
25 14 6.3883 -5.3804 -9.0679
26 1 5.9259 -6.7612 -8.7771
27 1 5.4635 -4.7423 -10.0390
28 1 7.7558 -5.4275 -9.6451
29 6 5.8162 -3.9376 -4.5610
30 1 -0.3634 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3634 -1.0277 0.0005
33 1 1.2514 4.3902 -0.0019
34 1 3.6994 4.6314 -0.0006
35 1 5.1251 2.5949 0.0114
36 1 3.7947 -0.7223 0.6625
37 1 5.2629 0.2356 0.3535
38 1 3.8710 -0.0712 -2.0847
39 1 6.8300 -3.0922 -1.3896
40 1 6.5275 -4.7623 -1.9298
41 1 8.5576 -2.8051 -3.1011
42 1 8.9172 -4.2749 -2.1625
43 1 7.8225 -5.6496 -3.9239
44 1 9.1765 -4.7028 -4.5855
45 1 5.1180 -3.0203 -8.1206
46 1 5.4387 -4.9521 -4.4325
47 1 5.1549 -3.3832 -5.2268
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001328818906.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:15:28
Heat of formation + Delta-G solvation = -80.293786 kcal
Electronic energy + Delta-G solvation = -30581.746586 eV
Core-core repulsion = 26343.584911 eV
Total energy + Delta-G solvation = -4238.161674 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.04709 -41.61166 -39.77481 -38.88447 -38.50497 -36.59431 -35.18343 -33.62985
-33.35758 -31.96154 -31.57804 -28.64654 -28.12250 -27.18231 -26.58133 -24.22785
-24.00301 -23.49454 -22.89848 -21.62031 -20.53629 -19.37642 -18.88987 -18.26307
-18.16833 -17.93122 -17.16077 -17.00831 -16.73998 -16.53680 -16.39612 -15.89715
-15.57435 -15.35274 -15.19319 -14.96866 -14.76636 -14.63918 -14.40164 -14.33613
-13.98480 -13.95371 -13.73240 -13.47616 -13.07052 -12.97896 -12.84176 -12.54638
-12.52894 -12.27672 -12.20526 -12.15280 -11.73427 -11.62172 -11.15567 -10.98713
-10.94191 -10.69625 -10.53431 -10.37358 -10.08625 -9.55023 -9.48395 -8.10594
-6.27664 -0.03042 0.28829 0.37283 1.40024 1.42723 1.46367 1.51922
2.10979 2.15036 2.41895 2.55297 2.83179 3.17172 3.24139 3.35269
3.67640 3.79501 4.05571 4.14058 4.19082 4.22444 4.34723 4.38807
4.39227 4.50482 4.55395 4.60199 4.71750 4.72785 4.74134 4.81200
4.84021 5.06500 5.07266 5.14648 5.21033 5.24346 5.26892 5.34988
5.48150 5.49899 5.57770 5.85018 5.94211 5.97996 6.19660 6.30475
6.43040 6.71336 6.81197 6.84097 6.99467 7.42083 8.92761
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.015116 B = 0.002467 C = 0.002309
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1851.864110 B =11345.100201 C =12123.568484
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 O -0.321 6.321
3 C 0.316 3.684
4 N -0.562 5.562
5 C 0.139 3.861
6 C -0.204 4.204
7 C -0.019 4.019
8 C -0.197 4.197
9 C 0.178 3.822
10 N -0.683 5.683
11 C 0.522 3.478
12 O -0.521 6.521
13 C 0.485 3.515
14 O -0.559 6.559
15 N -0.576 5.576
16 C 0.071 3.929
17 C -0.125 4.125
18 C -0.107 4.107
19 C 0.040 3.960
20 H -0.010 1.010
21 C -0.536 4.536
22 H 0.063 0.937
23 C 0.011 3.989
24 N -0.914 5.914
25 Si 0.959 3.041
26 H -0.268 1.268
27 H -0.288 1.288
28 H -0.269 1.269
29 C 0.121 3.879
30 H 0.064 0.936
31 H 0.054 0.946
32 H 0.111 0.889
33 H 0.189 0.811
34 H 0.174 0.826
35 H 0.169 0.831
36 H 0.078 0.922
37 H 0.102 0.898
38 H 0.411 0.589
39 H 0.139 0.861
40 H 0.072 0.928
41 H 0.049 0.951
42 H 0.102 0.898
43 H 0.057 0.943
44 H 0.055 0.945
45 H 0.261 0.739
46 H 0.044 0.956
47 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.265 13.317 20.154 24.723
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 O -0.228 6.228
3 C 0.137 3.863
4 N -0.286 5.286
5 C -0.017 4.017
6 C -0.224 4.224
7 C -0.045 4.045
8 C -0.200 4.200
9 C 0.056 3.944
10 N -0.334 5.334
11 C 0.303 3.697
12 O -0.399 6.399
13 C 0.268 3.732
14 O -0.438 6.438
15 N -0.307 5.307
16 C -0.050 4.050
17 C -0.163 4.163
18 C -0.145 4.145
19 C 0.021 3.979
20 H 0.008 0.992
21 C -0.575 4.575
22 H 0.081 0.919
23 C -0.189 4.189
24 N -0.552 5.552
25 Si 0.784 3.216
26 H -0.193 1.193
27 H -0.214 1.214
28 H -0.194 1.194
29 C -0.001 4.001
30 H 0.082 0.918
31 H 0.073 0.927
32 H 0.130 0.870
33 H 0.206 0.794
34 H 0.191 0.809
35 H 0.187 0.813
36 H 0.097 0.903
37 H 0.120 0.880
38 H 0.247 0.753
39 H 0.156 0.844
40 H 0.090 0.910
41 H 0.068 0.932
42 H 0.120 0.880
43 H 0.075 0.925
44 H 0.073 0.927
45 H 0.070 0.930
46 H 0.062 0.938
47 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -6.157 12.904 20.264 24.800
hybrid contribution -0.032 -0.168 -1.723 1.731
sum -6.189 12.736 18.541 23.330
Atomic orbital electron populations
1.23004 0.76030 1.04224 1.02344 1.86274 1.24218 1.24928 1.87394
1.19963 0.89403 0.85144 0.91753 1.67412 1.41391 0.99478 1.20324
1.23124 0.94269 0.93658 0.90602 1.22399 0.94371 1.01050 1.04554
1.21823 1.02358 0.89905 0.90412 1.19878 0.90813 0.96835 1.12492
1.20135 1.00374 0.91890 0.82008 1.45868 1.51051 1.24225 1.12252
1.19857 0.79829 0.81745 0.88220 1.90451 1.44712 1.59019 1.45738
1.20542 0.81583 0.81804 0.89290 1.90746 1.45606 1.59394 1.48086
1.48458 1.36167 1.29342 1.16777 1.22915 0.87803 1.02314 0.91931
1.21934 0.96588 1.00239 0.97540 1.21559 0.99166 0.98708 0.95021
1.18887 0.91008 0.94784 0.93269 0.99193 1.21461 1.26100 1.11171
0.98747 0.91898 1.25891 0.94993 0.95922 1.02065 1.70066 1.27792
1.24616 1.32746 0.85600 0.78064 0.78934 0.79008 1.19283 1.21367
1.19391 1.21948 1.02029 0.94777 0.81324 0.91751 0.92688 0.87042
0.79376 0.80895 0.81324 0.90335 0.88032 0.75285 0.84372 0.90964
0.93188 0.88001 0.92472 0.92666 0.93022 0.93773 0.89766
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.69 10.38 113.37 1.18 1.87 16
2 O -0.32 -7.61 9.73 -89.88 -0.87 -8.48 16
3 C 0.32 6.97 7.47 84.78 0.63 7.60 16
4 N -0.56 -11.21 9.22 -308.94 -2.85 -14.06 16
5 C 0.14 1.84 11.18 84.64 0.95 2.78 16
6 C -0.20 -2.10 10.11 22.37 0.23 -1.88 16
7 C -0.02 -0.25 9.81 22.45 0.22 -0.03 16
8 C -0.20 -3.70 5.28 -19.67 -0.10 -3.81 16
9 C 0.18 3.70 5.49 85.63 0.47 4.17 16
10 N -0.68 -18.59 5.54 -468.14 -2.59 -21.18 16
11 C 0.52 17.46 7.74 87.27 0.68 18.13 16
12 O -0.52 -17.20 13.18 -3.25 -0.04 -17.24 16
13 C 0.49 20.56 7.73 87.27 0.67 21.24 16
14 O -0.56 -27.57 15.93 -3.23 -0.05 -27.62 16
15 N -0.58 -24.80 2.97 -820.49 -2.44 -27.24 16
16 C 0.07 2.46 5.98 86.36 0.52 2.97 16
17 C -0.13 -4.16 6.09 30.68 0.19 -3.98 16
18 C -0.11 -4.32 5.10 30.63 0.16 -4.17 16
19 C 0.04 2.04 2.26 -11.47 -0.03 2.02 16
20 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16
21 C -0.54 -29.70 8.56 25.60 0.22 -29.48 16
22 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16
23 C 0.01 0.61 5.30 84.65 0.45 1.06 16
24 N -0.91 -55.15 11.39 21.45 0.24 -54.91 16
25 Si 0.96 44.19 29.54 68.60 2.03 46.22 16
26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
27 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16
28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
29 C 0.12 6.15 5.41 86.36 0.47 6.62 16
30 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16
31 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16
32 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16
33 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16
34 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16
35 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16
36 H 0.08 1.77 7.87 -2.39 -0.02 1.76 16
37 H 0.10 1.74 8.03 -2.39 -0.02 1.72 16
38 H 0.41 11.66 7.95 -92.71 -0.74 10.92 16
39 H 0.14 4.52 4.31 -47.53 -0.21 4.31 16
40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16
41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
42 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16
43 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16
44 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16
45 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16
46 H 0.04 2.22 8.14 -2.38 -0.02 2.20 16
47 H 0.08 5.01 5.13 -2.39 -0.01 4.99 16
Total: -1.00 -74.00 387.57 0.38 -73.62
By element:
Atomic # 1 Polarization: 25.68 SS G_CDS: 0.07 Total: 25.75 kcal
Atomic # 6 Polarization: 18.25 SS G_CDS: 6.89 Total: 25.13 kcal
Atomic # 7 Polarization: -109.75 SS G_CDS: -7.64 Total: -117.39 kcal
Atomic # 8 Polarization: -52.37 SS G_CDS: -0.97 Total: -53.34 kcal
Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal
Total: -74.00 0.38 -73.62 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001328818906.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.676 kcal
(2) G-P(sol) polarization free energy of solvation -73.996 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.618 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.294 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds