Wall clock time and date at job start Wed Apr 1 2020 05:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35671 * 116.99854 * 2 1 4 4 N 1.32276 * 119.68900 * 359.97438 * 3 2 1 5 5 C 1.31933 * 121.65230 * 180.02562 * 4 3 2 6 6 C 1.38088 * 120.83259 * 359.97438 * 5 4 3 7 7 C 1.38793 * 119.28659 * 359.73491 * 6 5 4 8 8 C 1.38419 * 118.48323 * 0.52663 * 7 6 5 9 9 C 1.50704 * 120.44328 * 179.73529 * 8 7 6 10 10 N 1.46499 * 109.47090 * 259.72819 * 9 8 7 11 11 C 1.34775 * 119.99505 * 179.97438 * 10 9 8 12 12 O 1.21352 * 120.00141 * 359.97438 * 11 10 9 13 13 C 1.49448 * 119.99800 * 180.02562 * 11 10 9 14 14 O 1.21344 * 120.00308 * 353.23338 * 13 11 10 15 15 N 1.34784 * 120.00133 * 173.23049 * 13 11 10 16 16 C 1.46929 * 120.62828 * 351.35143 * 15 13 11 17 17 C 1.53191 * 108.89438 * 233.55930 * 16 15 13 18 18 C 1.53070 * 109.29330 * 305.58156 * 17 16 15 19 19 C 1.53040 * 109.66092 * 61.15257 * 18 17 16 20 20 H 1.09000 * 109.49788 * 58.65045 * 19 18 17 21 21 C 1.50699 * 109.49627 * 178.74544 * 19 18 17 22 22 H 1.07993 * 120.00318 * 359.84311 * 21 19 18 23 23 C 1.37881 * 120.00047 * 179.83697 * 21 19 18 24 24 N 1.31523 * 119.99840 * 0.02562 * 23 21 19 25 25 Si 1.86793 * 120.00310 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47250 * 60.00246 * 25 23 21 27 27 H 1.48503 * 109.47339 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46979 * 299.99914 * 25 23 21 29 29 C 1.46924 * 120.63092 * 171.37996 * 15 13 11 30 30 H 1.09002 * 109.47490 * 299.99804 * 1 2 3 31 31 H 1.09001 * 109.47230 * 60.00151 * 1 2 3 32 32 H 1.09005 * 109.47522 * 180.02562 * 1 2 3 33 33 H 1.08005 * 119.58495 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.35655 * 180.02562 * 6 5 4 35 35 H 1.07993 * 120.75749 * 180.28986 * 7 6 5 36 36 H 1.08995 * 109.46665 * 139.72965 * 9 8 7 37 37 H 1.09002 * 109.46302 * 19.72795 * 9 8 7 38 38 H 0.96995 * 120.00359 * 0.02562 * 10 9 8 39 39 H 1.09001 * 109.58364 * 353.42154 * 16 15 13 40 40 H 1.08998 * 109.58185 * 113.69820 * 16 15 13 41 41 H 1.09001 * 109.49476 * 65.38778 * 17 16 15 42 42 H 1.08999 * 109.49901 * 185.48778 * 17 16 15 43 43 H 1.09002 * 109.35068 * 301.12365 * 18 17 16 44 44 H 1.09002 * 109.44049 * 181.23616 * 18 17 16 45 45 H 0.96998 * 120.00395 * 179.97438 * 24 23 21 46 46 H 1.09006 * 109.57806 * 246.15416 * 29 15 13 47 47 H 1.09000 * 109.58866 * 6.43300 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3184 2.3143 -0.0005 5 6 1.8767 3.5096 -0.0010 6 6 3.2505 3.6491 -0.0005 7 6 4.0483 2.5134 0.0061 8 6 3.4322 1.2739 0.0009 9 6 4.2557 0.0118 0.0018 10 7 4.3221 -0.5289 -1.3582 11 6 5.0110 -1.6618 -1.5999 12 8 5.5765 -2.2337 -0.6912 13 6 5.0792 -2.2132 -2.9873 14 8 4.4165 -1.7131 -3.8723 15 7 5.8770 -3.2659 -3.2557 16 6 6.8243 -3.7632 -2.2486 17 6 8.2243 -3.8164 -2.8681 18 6 8.1771 -4.6450 -4.1543 19 6 7.2267 -3.9861 -5.1566 20 1 7.5671 -2.9726 -5.3687 21 6 7.2066 -4.7878 -6.4325 22 1 7.8131 -5.6770 -6.5212 23 6 6.4138 -4.3862 -7.4867 24 7 5.6755 -3.3031 -7.3789 25 14 6.3883 -5.3804 -9.0679 26 1 5.9259 -6.7612 -8.7771 27 1 5.4635 -4.7423 -10.0390 28 1 7.7558 -5.4275 -9.6451 29 6 5.8162 -3.9376 -4.5610 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.2514 4.3902 -0.0019 34 1 3.6994 4.6314 -0.0006 35 1 5.1251 2.5949 0.0114 36 1 3.7947 -0.7223 0.6625 37 1 5.2629 0.2356 0.3535 38 1 3.8710 -0.0712 -2.0847 39 1 6.8300 -3.0922 -1.3896 40 1 6.5275 -4.7623 -1.9298 41 1 8.5576 -2.8051 -3.1011 42 1 8.9172 -4.2749 -2.1625 43 1 7.8225 -5.6496 -3.9239 44 1 9.1765 -4.7028 -4.5855 45 1 5.1180 -3.0203 -8.1206 46 1 5.4387 -4.9521 -4.4325 47 1 5.1549 -3.3832 -5.2268 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328818906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:28 Heat of formation + Delta-G solvation = -80.293786 kcal Electronic energy + Delta-G solvation = -30581.746586 eV Core-core repulsion = 26343.584911 eV Total energy + Delta-G solvation = -4238.161674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.04709 -41.61166 -39.77481 -38.88447 -38.50497 -36.59431 -35.18343 -33.62985 -33.35758 -31.96154 -31.57804 -28.64654 -28.12250 -27.18231 -26.58133 -24.22785 -24.00301 -23.49454 -22.89848 -21.62031 -20.53629 -19.37642 -18.88987 -18.26307 -18.16833 -17.93122 -17.16077 -17.00831 -16.73998 -16.53680 -16.39612 -15.89715 -15.57435 -15.35274 -15.19319 -14.96866 -14.76636 -14.63918 -14.40164 -14.33613 -13.98480 -13.95371 -13.73240 -13.47616 -13.07052 -12.97896 -12.84176 -12.54638 -12.52894 -12.27672 -12.20526 -12.15280 -11.73427 -11.62172 -11.15567 -10.98713 -10.94191 -10.69625 -10.53431 -10.37358 -10.08625 -9.55023 -9.48395 -8.10594 -6.27664 -0.03042 0.28829 0.37283 1.40024 1.42723 1.46367 1.51922 2.10979 2.15036 2.41895 2.55297 2.83179 3.17172 3.24139 3.35269 3.67640 3.79501 4.05571 4.14058 4.19082 4.22444 4.34723 4.38807 4.39227 4.50482 4.55395 4.60199 4.71750 4.72785 4.74134 4.81200 4.84021 5.06500 5.07266 5.14648 5.21033 5.24346 5.26892 5.34988 5.48150 5.49899 5.57770 5.85018 5.94211 5.97996 6.19660 6.30475 6.43040 6.71336 6.81197 6.84097 6.99467 7.42083 8.92761 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.002467 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.864110 B =11345.100201 C =12123.568484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.321 6.321 3 C 0.316 3.684 4 N -0.562 5.562 5 C 0.139 3.861 6 C -0.204 4.204 7 C -0.019 4.019 8 C -0.197 4.197 9 C 0.178 3.822 10 N -0.683 5.683 11 C 0.522 3.478 12 O -0.521 6.521 13 C 0.485 3.515 14 O -0.559 6.559 15 N -0.576 5.576 16 C 0.071 3.929 17 C -0.125 4.125 18 C -0.107 4.107 19 C 0.040 3.960 20 H -0.010 1.010 21 C -0.536 4.536 22 H 0.063 0.937 23 C 0.011 3.989 24 N -0.914 5.914 25 Si 0.959 3.041 26 H -0.268 1.268 27 H -0.288 1.288 28 H -0.269 1.269 29 C 0.121 3.879 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.189 0.811 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.411 0.589 39 H 0.139 0.861 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.102 0.898 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.261 0.739 46 H 0.044 0.956 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.265 13.317 20.154 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.228 6.228 3 C 0.137 3.863 4 N -0.286 5.286 5 C -0.017 4.017 6 C -0.224 4.224 7 C -0.045 4.045 8 C -0.200 4.200 9 C 0.056 3.944 10 N -0.334 5.334 11 C 0.303 3.697 12 O -0.399 6.399 13 C 0.268 3.732 14 O -0.438 6.438 15 N -0.307 5.307 16 C -0.050 4.050 17 C -0.163 4.163 18 C -0.145 4.145 19 C 0.021 3.979 20 H 0.008 0.992 21 C -0.575 4.575 22 H 0.081 0.919 23 C -0.189 4.189 24 N -0.552 5.552 25 Si 0.784 3.216 26 H -0.193 1.193 27 H -0.214 1.214 28 H -0.194 1.194 29 C -0.001 4.001 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.130 0.870 33 H 0.206 0.794 34 H 0.191 0.809 35 H 0.187 0.813 36 H 0.097 0.903 37 H 0.120 0.880 38 H 0.247 0.753 39 H 0.156 0.844 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.120 0.880 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.157 12.904 20.264 24.800 hybrid contribution -0.032 -0.168 -1.723 1.731 sum -6.189 12.736 18.541 23.330 Atomic orbital electron populations 1.23004 0.76030 1.04224 1.02344 1.86274 1.24218 1.24928 1.87394 1.19963 0.89403 0.85144 0.91753 1.67412 1.41391 0.99478 1.20324 1.23124 0.94269 0.93658 0.90602 1.22399 0.94371 1.01050 1.04554 1.21823 1.02358 0.89905 0.90412 1.19878 0.90813 0.96835 1.12492 1.20135 1.00374 0.91890 0.82008 1.45868 1.51051 1.24225 1.12252 1.19857 0.79829 0.81745 0.88220 1.90451 1.44712 1.59019 1.45738 1.20542 0.81583 0.81804 0.89290 1.90746 1.45606 1.59394 1.48086 1.48458 1.36167 1.29342 1.16777 1.22915 0.87803 1.02314 0.91931 1.21934 0.96588 1.00239 0.97540 1.21559 0.99166 0.98708 0.95021 1.18887 0.91008 0.94784 0.93269 0.99193 1.21461 1.26100 1.11171 0.98747 0.91898 1.25891 0.94993 0.95922 1.02065 1.70066 1.27792 1.24616 1.32746 0.85600 0.78064 0.78934 0.79008 1.19283 1.21367 1.19391 1.21948 1.02029 0.94777 0.81324 0.91751 0.92688 0.87042 0.79376 0.80895 0.81324 0.90335 0.88032 0.75285 0.84372 0.90964 0.93188 0.88001 0.92472 0.92666 0.93022 0.93773 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.38 113.37 1.18 1.87 16 2 O -0.32 -7.61 9.73 -89.88 -0.87 -8.48 16 3 C 0.32 6.97 7.47 84.78 0.63 7.60 16 4 N -0.56 -11.21 9.22 -308.94 -2.85 -14.06 16 5 C 0.14 1.84 11.18 84.64 0.95 2.78 16 6 C -0.20 -2.10 10.11 22.37 0.23 -1.88 16 7 C -0.02 -0.25 9.81 22.45 0.22 -0.03 16 8 C -0.20 -3.70 5.28 -19.67 -0.10 -3.81 16 9 C 0.18 3.70 5.49 85.63 0.47 4.17 16 10 N -0.68 -18.59 5.54 -468.14 -2.59 -21.18 16 11 C 0.52 17.46 7.74 87.27 0.68 18.13 16 12 O -0.52 -17.20 13.18 -3.25 -0.04 -17.24 16 13 C 0.49 20.56 7.73 87.27 0.67 21.24 16 14 O -0.56 -27.57 15.93 -3.23 -0.05 -27.62 16 15 N -0.58 -24.80 2.97 -820.49 -2.44 -27.24 16 16 C 0.07 2.46 5.98 86.36 0.52 2.97 16 17 C -0.13 -4.16 6.09 30.68 0.19 -3.98 16 18 C -0.11 -4.32 5.10 30.63 0.16 -4.17 16 19 C 0.04 2.04 2.26 -11.47 -0.03 2.02 16 20 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 21 C -0.54 -29.70 8.56 25.60 0.22 -29.48 16 22 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 23 C 0.01 0.61 5.30 84.65 0.45 1.06 16 24 N -0.91 -55.15 11.39 21.45 0.24 -54.91 16 25 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 C 0.12 6.15 5.41 86.36 0.47 6.62 16 30 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 31 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 32 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 35 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.08 1.77 7.87 -2.39 -0.02 1.76 16 37 H 0.10 1.74 8.03 -2.39 -0.02 1.72 16 38 H 0.41 11.66 7.95 -92.71 -0.74 10.92 16 39 H 0.14 4.52 4.31 -47.53 -0.21 4.31 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.04 2.22 8.14 -2.38 -0.02 2.20 16 47 H 0.08 5.01 5.13 -2.39 -0.01 4.99 16 Total: -1.00 -74.00 387.57 0.38 -73.62 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.07 Total: 25.75 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: 6.89 Total: 25.13 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -7.64 Total: -117.39 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.97 Total: -53.34 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -74.00 0.38 -73.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328818906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.676 kcal (2) G-P(sol) polarization free energy of solvation -73.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds