Wall clock time and date at job start Wed Apr 1 2020 04:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36738 * 127.13981 * 2 1 4 4 C 1.50705 * 126.34515 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46890 * 89.99931 * 4 3 2 6 6 C 1.50705 * 109.46856 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00218 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99513 * 179.72267 * 6 5 4 9 9 N 1.31511 * 120.00364 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99481 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47205 * 90.00145 * 10 8 6 12 12 H 1.48504 * 109.46898 * 210.00311 * 10 8 6 13 13 H 1.48499 * 109.47278 * 329.99921 * 10 8 6 14 14 N 1.30293 * 107.30844 * 180.26209 * 3 2 1 15 15 N 1.28533 * 110.05334 * 359.56262 * 14 3 2 16 16 C 1.31217 * 109.85647 * 0.44907 * 15 14 3 17 17 N 1.38583 * 126.47210 * 179.72992 * 16 15 14 18 18 C 1.46953 * 110.99737 * 62.01917 * 17 16 15 19 19 C 1.53056 * 109.36645 * 176.81242 * 18 17 16 20 20 N 1.46952 * 109.36139 * 58.39724 * 19 18 17 21 21 C 1.39618 * 111.00056 * 176.81702 * 20 19 18 22 22 C 1.34103 * 125.23212 * 303.80467 * 21 20 19 23 23 C 1.38586 * 114.71385 * 179.97438 * 22 21 20 24 24 C 1.33223 * 114.98624 * 359.97438 * 23 22 21 25 25 S 1.75854 * 109.74600 * 359.76788 * 24 23 22 26 26 C 1.46961 * 110.88617 * 300.68196 * 20 19 18 27 27 C 1.46958 * 111.00117 * 298.21963 * 17 16 15 28 28 H 1.08994 * 109.47525 * 85.53248 * 1 2 3 29 29 H 1.09004 * 109.47114 * 205.53702 * 1 2 3 30 30 H 1.08998 * 109.46935 * 325.53386 * 1 2 3 31 31 H 1.08993 * 109.47086 * 330.00034 * 4 3 2 32 32 H 1.08998 * 109.47051 * 209.99755 * 4 3 2 33 33 H 1.09001 * 109.46989 * 60.00464 * 5 4 3 34 34 H 1.08994 * 109.47689 * 300.00228 * 5 4 3 35 35 H 0.97006 * 120.00021 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.49223 * 296.78012 * 18 17 16 37 37 H 1.09005 * 109.49096 * 56.84712 * 18 17 16 38 38 H 1.09004 * 109.48726 * 298.43469 * 19 18 17 39 39 H 1.08993 * 109.51176 * 178.38066 * 19 18 17 40 40 H 1.07991 * 122.64242 * 359.97438 * 22 21 20 41 41 H 1.08004 * 122.50554 * 179.97438 * 23 22 21 42 42 H 1.08002 * 125.12718 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.48694 * 299.35646 * 26 20 19 44 44 H 1.08994 * 109.50684 * 179.29925 * 26 20 19 45 45 H 1.09006 * 109.48630 * 303.15718 * 27 17 16 46 46 H 1.09002 * 109.48861 * 63.19881 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0900 0.0000 4 6 1.8621 2.5349 0.0005 5 6 1.7177 3.0234 1.4432 6 6 1.2899 4.4685 1.4438 7 1 1.1360 4.9864 0.5087 8 6 1.0889 5.1274 2.6381 9 7 1.2710 4.4951 3.7768 10 14 0.5580 6.9184 2.6388 11 1 -0.9250 6.9950 2.6326 12 1 1.0834 7.5899 3.8546 13 1 1.0936 7.5939 1.4296 14 7 3.5162 0.6480 -0.0057 15 7 3.5212 -0.6373 0.0000 16 6 2.2888 -1.0878 0.0000 17 7 1.8977 -2.4173 -0.0001 18 6 2.3667 -3.1042 1.2115 19 6 1.8482 -4.5443 1.2113 20 7 2.3219 -5.2325 0.0024 21 6 1.9279 -6.5719 0.0023 22 6 2.2026 -7.4592 0.9696 23 6 1.7037 -8.7327 0.7464 24 6 1.0284 -8.8809 -0.3924 25 16 0.9878 -7.3531 -1.2623 26 6 1.8530 -4.5456 -1.2092 27 6 2.3714 -3.1056 -1.2090 28 1 -0.3634 0.0800 -1.0245 29 1 -0.3633 -0.9273 0.4430 30 1 -0.3633 0.8473 0.5816 31 1 0.9055 2.6304 -0.5129 32 1 2.6120 3.1364 -0.5133 33 1 2.6744 2.9280 1.9567 34 1 0.9680 2.4220 1.9572 35 1 1.1292 4.9586 4.6170 36 1 3.4565 -3.1101 1.2274 37 1 1.9926 -2.5831 2.0928 38 1 0.7583 -4.5384 1.2229 39 1 2.2184 -5.0645 2.0946 40 1 2.7679 -7.2016 1.8529 41 1 1.8514 -9.5443 1.4434 42 1 0.5709 -9.7997 -0.7285 43 1 0.7631 -4.5397 -1.2251 44 1 2.2267 -5.0665 -2.0907 45 1 2.0009 -2.5855 -2.0924 46 1 3.4614 -3.1112 -1.2208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341699367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:01 Heat of formation + Delta-G solvation = 131.063666 kcal Electronic energy + Delta-G solvation = -27530.750184 eV Core-core repulsion = 23776.799279 eV Total energy + Delta-G solvation = -3753.950905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.66658 -40.12648 -37.89780 -35.66453 -34.85775 -33.82012 -31.79948 -31.54944 -29.82689 -28.27484 -27.36502 -26.26542 -25.19492 -24.30720 -23.50721 -22.01823 -21.49600 -20.28179 -19.83816 -19.45429 -18.42889 -17.20052 -16.58846 -16.21825 -16.08149 -15.84018 -15.38182 -15.04659 -14.87539 -14.67669 -14.51991 -14.19460 -13.59887 -13.24666 -13.12562 -13.09286 -12.89991 -12.76390 -12.57426 -12.39580 -12.26965 -11.78298 -11.72110 -11.58804 -11.33793 -11.19362 -11.10341 -11.01926 -10.72120 -10.47589 -10.14781 -10.01131 -9.90711 -9.76121 -9.26732 -8.92351 -8.81087 -8.50136 -8.44497 -8.17850 -6.08814 -4.13169 0.70212 1.15460 1.63653 1.99860 2.39779 2.46738 3.18712 3.21110 3.27050 3.34339 3.37564 3.62349 4.29946 4.38316 4.59365 4.64194 4.80443 4.84536 4.87982 4.96700 4.98699 5.02237 5.10282 5.23907 5.25459 5.27318 5.29544 5.38965 5.40839 5.57229 5.58481 5.60973 5.64221 5.83033 5.88089 6.06452 6.25544 6.28188 6.29811 6.40653 6.48391 6.52895 6.62553 6.87136 7.36912 7.50842 7.64308 7.88236 8.25475 8.92881 9.08817 9.51693 11.02233 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.001902 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.288035 B =14719.308308 C =14949.590156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.466 5.466 3 C 0.219 3.781 4 C -0.033 4.033 5 C 0.032 3.968 6 C -0.525 4.525 7 H 0.059 0.941 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.272 1.272 14 N -0.297 5.297 15 N -0.307 5.307 16 C 0.314 3.686 17 N -0.461 5.461 18 C 0.066 3.934 19 C 0.063 3.937 20 N -0.451 5.451 21 C 0.024 3.976 22 C -0.180 4.180 23 C -0.109 4.109 24 C -0.232 4.232 25 S 0.073 5.927 26 C 0.049 3.951 27 C 0.071 3.929 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.162 0.838 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 -26.248 -9.098 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.158 5.158 3 C -0.048 4.048 4 C -0.072 4.072 5 C -0.007 4.007 6 C -0.563 4.563 7 H 0.078 0.922 8 C -0.143 4.143 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 N -0.137 5.137 15 N -0.152 5.152 16 C -0.042 4.042 17 N -0.187 5.187 18 C -0.062 4.062 19 C -0.064 4.064 20 N -0.168 5.168 21 C -0.191 4.191 22 C -0.212 4.212 23 C -0.140 4.140 24 C -0.368 4.368 25 S 0.332 5.668 26 C -0.079 4.079 27 C -0.057 4.057 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.044 0.956 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.179 0.821 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.341 -25.698 -10.267 27.874 hybrid contribution -1.147 0.325 1.488 1.907 sum -4.488 -25.374 -8.779 27.222 Atomic orbital electron populations 1.22020 0.75366 1.05310 1.03607 1.46209 1.08869 1.05975 1.54758 1.25688 0.86286 0.92533 1.00276 1.20479 1.00965 0.82452 1.03348 1.19073 0.97898 0.95957 0.87724 1.21130 1.46555 0.96009 0.92589 0.92247 1.25019 0.95363 0.98349 0.95574 1.69969 1.48883 1.36839 0.97362 0.86543 0.78684 0.84791 0.77695 1.20668 1.21164 1.19707 1.74075 1.17708 1.01974 1.19966 1.74494 1.16943 1.04502 1.19225 1.21982 0.86406 0.87502 1.08310 1.58708 1.59418 0.96318 1.04298 1.22272 1.00371 0.92150 0.91422 1.22450 0.99265 0.93164 0.91534 1.59164 1.54936 0.98296 1.04399 1.23588 1.01485 0.94066 0.99978 1.19978 1.07023 0.92496 1.01723 1.19980 0.99074 0.97400 0.97499 1.25338 1.10139 1.01329 0.99992 1.84427 1.52269 1.04118 1.25969 1.22456 0.99478 0.94068 0.91892 1.22164 1.00237 0.91774 0.91497 0.90616 0.89137 0.88529 0.91077 0.89154 0.95597 0.96766 0.92834 0.91456 0.89142 0.92333 0.88639 0.84090 0.84267 0.82065 0.92031 0.88773 0.89421 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.88 59.85 0.65 1.63 16 2 N -0.47 -7.62 3.21 -121.46 -0.39 -8.01 16 3 C 0.22 4.27 7.32 -154.01 -1.13 3.14 16 4 C -0.03 -0.65 5.45 -27.88 -0.15 -0.80 16 5 C 0.03 0.79 4.96 -27.88 -0.14 0.65 16 6 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 7 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 10 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 N -0.30 -6.35 12.18 32.99 0.40 -5.95 16 15 N -0.31 -5.98 12.19 30.32 0.37 -5.61 16 16 C 0.31 5.09 6.45 -318.87 -2.06 3.04 16 17 N -0.46 -5.73 4.71 -174.35 -0.82 -6.55 16 18 C 0.07 0.75 5.53 -3.77 -0.02 0.72 16 19 C 0.06 0.56 5.44 -3.77 -0.02 0.54 16 20 N -0.45 -4.29 4.80 -172.12 -0.83 -5.11 16 21 C 0.02 0.22 6.03 -15.45 -0.09 0.12 16 22 C -0.18 -1.53 9.53 -40.91 -0.39 -1.92 16 23 C -0.11 -0.81 10.18 -41.20 -0.42 -1.23 16 24 C -0.23 -1.68 11.21 28.98 0.32 -1.36 16 25 S 0.07 0.58 21.48 -107.50 -2.31 -1.73 16 26 C 0.05 0.43 4.67 -3.77 -0.02 0.41 16 27 C 0.07 0.76 5.53 -3.77 -0.02 0.74 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 30 H 0.10 1.25 8.04 -51.93 -0.42 0.83 16 31 H 0.07 1.25 7.97 -51.93 -0.41 0.84 16 32 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.74 7.31 -51.93 -0.38 0.37 16 40 H 0.14 1.08 7.63 -52.49 -0.40 0.68 16 41 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.06 0.53 7.95 -51.93 -0.41 0.11 16 44 H 0.09 0.75 7.67 -51.93 -0.40 0.35 16 45 H 0.09 0.90 8.13 -51.93 -0.42 0.48 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -32.58 390.56 -12.90 -45.48 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -7.04 Total: -1.69 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -3.89 Total: -7.19 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.53 Total: -56.70 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 0.58 SS G_CDS: -2.31 Total: -1.73 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.58 -12.90 -45.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341699367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.542 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds