Wall clock time and date at job start Wed Apr 1 2020 04:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36738 * 127.13981 * 2 1 4 4 C 1.50705 * 126.34515 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46890 * 89.99931 * 4 3 2 6 6 C 1.50705 * 109.46856 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00218 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99513 * 179.72267 * 6 5 4 9 9 N 1.31511 * 120.00364 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99481 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47205 * 90.00145 * 10 8 6 12 12 H 1.48504 * 109.46898 * 210.00311 * 10 8 6 13 13 H 1.48499 * 109.47278 * 329.99921 * 10 8 6 14 14 N 1.30293 * 107.30844 * 180.26209 * 3 2 1 15 15 N 1.28533 * 110.05334 * 359.56262 * 14 3 2 16 16 C 1.31217 * 109.85647 * 0.44907 * 15 14 3 17 17 N 1.38583 * 126.47210 * 179.72992 * 16 15 14 18 18 C 1.46953 * 110.99737 * 62.01917 * 17 16 15 19 19 C 1.53056 * 109.36645 * 176.81242 * 18 17 16 20 20 N 1.46952 * 109.36139 * 58.39724 * 19 18 17 21 21 C 1.39618 * 111.00056 * 176.81702 * 20 19 18 22 22 C 1.34103 * 125.23212 * 303.80467 * 21 20 19 23 23 C 1.38586 * 114.71385 * 179.97438 * 22 21 20 24 24 C 1.33223 * 114.98624 * 359.97438 * 23 22 21 25 25 S 1.75854 * 109.74600 * 359.76788 * 24 23 22 26 26 C 1.46961 * 110.88617 * 300.68196 * 20 19 18 27 27 C 1.46958 * 111.00117 * 298.21963 * 17 16 15 28 28 H 1.08994 * 109.47525 * 85.53248 * 1 2 3 29 29 H 1.09004 * 109.47114 * 205.53702 * 1 2 3 30 30 H 1.08998 * 109.46935 * 325.53386 * 1 2 3 31 31 H 1.08993 * 109.47086 * 330.00034 * 4 3 2 32 32 H 1.08998 * 109.47051 * 209.99755 * 4 3 2 33 33 H 1.09001 * 109.46989 * 60.00464 * 5 4 3 34 34 H 1.08994 * 109.47689 * 300.00228 * 5 4 3 35 35 H 0.97006 * 120.00021 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.49223 * 296.78012 * 18 17 16 37 37 H 1.09005 * 109.49096 * 56.84712 * 18 17 16 38 38 H 1.09004 * 109.48726 * 298.43469 * 19 18 17 39 39 H 1.08993 * 109.51176 * 178.38066 * 19 18 17 40 40 H 1.07991 * 122.64242 * 359.97438 * 22 21 20 41 41 H 1.08004 * 122.50554 * 179.97438 * 23 22 21 42 42 H 1.08002 * 125.12718 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.48694 * 299.35646 * 26 20 19 44 44 H 1.08994 * 109.50684 * 179.29925 * 26 20 19 45 45 H 1.09006 * 109.48630 * 303.15718 * 27 17 16 46 46 H 1.09002 * 109.48861 * 63.19881 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0900 0.0000 4 6 1.8621 2.5349 0.0005 5 6 1.7177 3.0234 1.4432 6 6 1.2899 4.4685 1.4438 7 1 1.1360 4.9864 0.5087 8 6 1.0889 5.1274 2.6381 9 7 1.2710 4.4951 3.7768 10 14 0.5580 6.9184 2.6388 11 1 -0.9250 6.9950 2.6326 12 1 1.0834 7.5899 3.8546 13 1 1.0936 7.5939 1.4296 14 7 3.5162 0.6480 -0.0057 15 7 3.5212 -0.6373 0.0000 16 6 2.2888 -1.0878 0.0000 17 7 1.8977 -2.4173 -0.0001 18 6 2.3667 -3.1042 1.2115 19 6 1.8482 -4.5443 1.2113 20 7 2.3219 -5.2325 0.0024 21 6 1.9279 -6.5719 0.0023 22 6 2.2026 -7.4592 0.9696 23 6 1.7037 -8.7327 0.7464 24 6 1.0284 -8.8809 -0.3924 25 16 0.9878 -7.3531 -1.2623 26 6 1.8530 -4.5456 -1.2092 27 6 2.3714 -3.1056 -1.2090 28 1 -0.3634 0.0800 -1.0245 29 1 -0.3633 -0.9273 0.4430 30 1 -0.3633 0.8473 0.5816 31 1 0.9055 2.6304 -0.5129 32 1 2.6120 3.1364 -0.5133 33 1 2.6744 2.9280 1.9567 34 1 0.9680 2.4220 1.9572 35 1 1.1292 4.9586 4.6170 36 1 3.4565 -3.1101 1.2274 37 1 1.9926 -2.5831 2.0928 38 1 0.7583 -4.5384 1.2229 39 1 2.2184 -5.0645 2.0946 40 1 2.7679 -7.2016 1.8529 41 1 1.8514 -9.5443 1.4434 42 1 0.5709 -9.7997 -0.7285 43 1 0.7631 -4.5397 -1.2251 44 1 2.2267 -5.0665 -2.0907 45 1 2.0009 -2.5855 -2.0924 46 1 3.4614 -3.1112 -1.2208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341699367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:00 Heat of formation + Delta-G solvation = 112.916294 kcal Electronic energy + Delta-G solvation = -27531.537113 eV Core-core repulsion = 23776.799279 eV Total energy + Delta-G solvation = -3754.737834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.06274 -40.94008 -38.63076 -36.59240 -36.32482 -35.51299 -33.61010 -32.37378 -30.96716 -29.49802 -28.46114 -27.35994 -26.83055 -25.13697 -24.18152 -23.79248 -22.67438 -21.63609 -20.97127 -20.06504 -19.17389 -18.62380 -18.18554 -17.50485 -17.21970 -16.66783 -16.50008 -16.13524 -15.95830 -15.79667 -15.48692 -15.27417 -14.92535 -14.70534 -14.37385 -14.20742 -13.79159 -13.71120 -13.53494 -13.41516 -13.25904 -13.01246 -12.86124 -12.78585 -12.57689 -12.53554 -12.48841 -12.31121 -12.08412 -11.80983 -11.73277 -11.60849 -11.30774 -11.08918 -10.79650 -10.57099 -10.04962 -10.02313 -9.39591 -8.81705 -8.20504 -6.32628 0.10433 0.55135 0.64294 1.05990 1.20183 1.43497 1.45389 1.56246 1.70203 1.86018 2.42031 2.51421 2.54986 3.14032 3.40735 3.51845 3.76518 3.78418 3.90136 4.00722 4.03622 4.12415 4.20747 4.32036 4.34740 4.37570 4.45567 4.54217 4.61675 4.65135 4.65724 4.66916 4.73332 4.78987 4.83786 4.87876 5.04826 5.05921 5.30447 5.38324 5.43363 5.47520 5.52541 5.58512 5.71543 5.78398 5.88058 6.11321 6.16843 6.83433 7.37502 7.64007 8.91518 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.001902 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.288035 B =14719.308308 C =14949.590156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.463 5.463 3 C 0.204 3.796 4 C -0.016 4.016 5 C 0.042 3.958 6 C -0.538 4.538 7 H 0.073 0.927 8 C 0.000 4.000 9 N -0.934 5.934 10 Si 0.968 3.032 11 H -0.269 1.269 12 H -0.288 1.288 13 H -0.261 1.261 14 N -0.334 5.334 15 N -0.342 5.342 16 C 0.334 3.666 17 N -0.451 5.451 18 C 0.067 3.933 19 C 0.073 3.927 20 N -0.462 5.462 21 C 0.004 3.996 22 C -0.183 4.183 23 C -0.119 4.119 24 C -0.230 4.230 25 S 0.073 5.927 26 C 0.058 3.942 27 C 0.073 3.927 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.089 0.911 33 H -0.018 1.018 34 H -0.004 1.004 35 H 0.263 0.737 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.145 0.855 41 H 0.159 0.841 42 H 0.183 0.817 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 -27.444 -10.316 29.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.154 5.154 3 C -0.064 4.064 4 C -0.055 4.055 5 C 0.004 3.996 6 C -0.576 4.576 7 H 0.092 0.908 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.793 3.207 11 H -0.194 1.194 12 H -0.214 1.214 13 H -0.185 1.185 14 N -0.174 5.174 15 N -0.186 5.186 16 C -0.023 4.023 17 N -0.178 5.178 18 C -0.060 4.060 19 C -0.053 4.053 20 N -0.180 5.180 21 C -0.211 4.211 22 C -0.216 4.216 23 C -0.149 4.149 24 C -0.366 4.366 25 S 0.332 5.668 26 C -0.069 4.069 27 C -0.054 4.054 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.001 0.999 34 H 0.014 0.986 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.163 0.837 41 H 0.177 0.823 42 H 0.200 0.800 43 H 0.088 0.912 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.324 -26.910 -11.510 29.749 hybrid contribution -0.541 0.528 1.879 2.025 sum -5.865 -26.383 -9.632 28.692 Atomic orbital electron populations 1.22343 0.72773 1.06026 1.05590 1.46394 1.10294 1.05042 1.53697 1.25430 0.86529 0.92972 1.01490 1.20178 1.02462 0.82852 1.00052 1.18840 0.94806 0.95536 0.90409 1.21592 1.45853 0.96942 0.93195 0.90850 1.26000 0.95406 1.03243 0.95178 1.70120 1.50303 1.38914 0.98110 0.85395 0.78694 0.78841 0.77805 1.19413 1.21421 1.18457 1.73964 1.19228 1.03163 1.21029 1.74416 1.18968 1.03892 1.21340 1.22364 0.85663 0.88895 1.05359 1.59003 1.58785 0.94575 1.05423 1.22272 0.99302 0.93696 0.90752 1.22361 0.99434 0.91344 0.92195 1.59153 1.55581 0.98770 1.04471 1.23648 1.02670 0.93833 1.00903 1.20213 1.06705 0.92958 1.01754 1.20217 0.99021 0.97542 0.98079 1.25683 1.09598 1.01653 0.99643 1.84390 1.52030 1.04646 1.25709 1.22388 0.99812 0.92477 0.92255 1.22204 0.99241 0.93080 0.90885 0.87679 0.87185 0.89347 0.88219 0.89225 0.99942 0.98567 0.92819 0.93321 0.89667 0.91710 0.87375 0.83693 0.82320 0.79982 0.91210 0.87726 0.88663 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.67 10.88 127.77 1.39 3.06 16 2 N -0.46 -14.93 3.21 -538.18 -1.73 -16.66 16 3 C 0.20 8.08 7.32 137.64 1.01 9.09 16 4 C -0.02 -0.63 5.45 29.85 0.16 -0.47 16 5 C 0.04 2.18 4.96 29.85 0.15 2.33 16 6 C -0.54 -29.06 9.11 25.60 0.23 -28.83 16 7 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 8 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 9 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 10 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 14 N -0.33 -14.76 12.18 -49.53 -0.60 -15.36 16 15 N -0.34 -13.72 12.19 -58.00 -0.71 -14.42 16 16 C 0.33 10.84 6.45 260.11 1.68 12.52 16 17 N -0.45 -10.89 4.71 -705.52 -3.32 -14.22 16 18 C 0.07 1.52 5.53 86.31 0.48 2.00 16 19 C 0.07 1.24 5.44 86.31 0.47 1.70 16 20 N -0.46 -8.21 4.80 -698.46 -3.35 -11.56 16 21 C 0.00 0.06 6.03 82.51 0.50 0.56 16 22 C -0.18 -2.80 9.53 21.41 0.20 -2.60 16 23 C -0.12 -1.49 10.18 21.22 0.22 -1.27 16 24 C -0.23 -2.76 11.21 66.69 0.75 -2.02 16 25 S 0.07 1.02 21.48 -56.49 -1.21 -0.19 16 26 C 0.06 0.94 4.67 86.31 0.40 1.35 16 27 C 0.07 1.52 5.53 86.31 0.48 1.99 16 28 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.11 2.05 8.12 -2.38 -0.02 2.04 16 30 H 0.09 2.19 8.04 -2.39 -0.02 2.17 16 31 H 0.10 3.37 7.97 -2.39 -0.02 3.35 16 32 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 33 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 34 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 2.00 8.13 -2.38 -0.02 1.98 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.11 1.55 7.31 -2.39 -0.02 1.53 16 40 H 0.15 2.00 7.63 -2.92 -0.02 1.98 16 41 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.07 1.03 7.95 -2.39 -0.02 1.01 16 44 H 0.10 1.49 7.67 -2.39 -0.02 1.47 16 45 H 0.10 1.83 8.13 -2.38 -0.02 1.81 16 46 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -72.23 390.56 0.93 -71.30 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.97 Total: 12.27 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 8.57 Total: -0.14 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -9.43 Total: -128.08 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -1.21 Total: -0.19 kcal Total: -72.23 0.93 -71.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341699367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.212 kcal (2) G-P(sol) polarization free energy of solvation -72.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds