Wall clock time and date at job start Wed Apr 1 2020 04:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34778 * 119.99946 * 2 1 4 4 O 1.21289 * 119.99671 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00012 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47035 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47131 * 179.97438 * 6 5 3 8 8 N 1.46498 * 109.47054 * 180.02562 * 7 6 5 9 9 C 1.34785 * 120.00103 * 180.02562 * 8 7 6 10 10 O 1.21347 * 119.99460 * 359.97438 * 9 8 7 11 11 C 1.49455 * 120.00020 * 179.97438 * 9 8 7 12 12 O 1.21343 * 119.99828 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99599 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99681 * 180.02562 * 13 11 9 15 15 C 1.50701 * 109.47362 * 179.97438 * 14 13 11 16 16 C 1.38632 * 119.74855 * 269.73233 * 15 14 13 17 17 C 1.37622 * 120.24185 * 179.71996 * 16 15 14 18 18 C 1.40711 * 119.74669 * 0.56508 * 17 16 15 19 19 C 1.41400 * 120.24519 * 179.68031 * 18 17 16 20 20 H 1.07993 * 120.00417 * 204.40825 * 19 18 17 21 21 C 1.39949 * 119.99722 * 24.41101 * 19 18 17 22 22 N 1.30829 * 120.00062 * 17.84366 * 21 19 18 23 23 Si 1.86798 * 120.00043 * 197.84420 * 21 19 18 24 24 H 1.48498 * 109.46821 * 90.00230 * 23 21 19 25 25 H 1.48501 * 109.47257 * 209.99803 * 23 21 19 26 26 H 1.48498 * 109.47318 * 330.00157 * 23 21 19 27 27 C 1.40712 * 119.51307 * 359.70755 * 18 17 16 28 28 C 1.37615 * 119.74605 * 359.97438 * 27 18 17 29 29 H 1.09008 * 109.46765 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47812 * 300.00397 * 1 2 3 31 31 H 1.09000 * 109.46834 * 60.01177 * 1 2 3 32 32 H 0.97003 * 120.00324 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47710 * 59.99644 * 5 3 2 34 34 H 1.09000 * 109.46871 * 299.98904 * 5 3 2 35 35 H 1.09007 * 109.47022 * 59.99542 * 6 5 3 36 36 H 1.08996 * 109.47190 * 299.99934 * 6 5 3 37 37 H 1.08999 * 109.47382 * 59.99704 * 7 6 5 38 38 H 1.09005 * 109.47114 * 299.99968 * 7 6 5 39 39 H 0.97005 * 120.00276 * 359.97438 * 8 7 6 40 40 H 0.96996 * 120.00336 * 359.97438 * 13 11 9 41 41 H 1.09007 * 109.47068 * 59.99799 * 14 13 11 42 42 H 1.08996 * 109.47220 * 300.00144 * 14 13 11 43 43 H 1.08000 * 119.87692 * 359.96552 * 16 15 14 44 44 H 1.08002 * 120.12182 * 180.27799 * 17 16 15 45 45 H 0.96994 * 119.99970 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.12698 * 179.97438 * 27 18 17 47 47 H 1.08000 * 119.87918 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2176 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1558 2.6098 -0.0002 7 6 5.6857 2.6099 0.0011 8 7 6.1740 3.9911 0.0009 9 6 7.4991 4.2374 0.0014 10 8 8.2876 3.3151 0.0024 11 6 7.9972 5.6465 0.0007 12 8 7.2086 6.5688 0.0002 13 7 9.3223 5.8928 0.0006 14 6 9.8106 7.2740 0.0005 15 6 11.3176 7.2741 0.0011 16 6 12.0050 7.2801 1.2050 17 6 13.3812 7.2744 1.2174 18 6 14.0903 7.2746 0.0020 19 6 15.5043 7.2757 0.0025 20 1 16.0443 7.6623 -0.8491 21 6 16.2040 6.7756 1.1065 22 7 15.5973 6.0023 1.9700 23 14 18.0042 7.2123 1.3474 24 1 18.1085 8.4528 2.1570 25 1 18.6929 6.1016 2.0527 26 1 18.6422 7.4296 0.0242 27 6 13.3820 7.2744 -1.2138 28 6 12.0059 7.2734 -1.2024 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 1.9500 -0.8400 0.0004 33 1 4.0095 0.6532 -0.8890 34 1 4.0087 0.6538 0.8909 35 1 3.7920 3.1243 0.8893 36 1 3.7928 3.1230 -0.8906 37 1 6.0498 2.0953 -0.8882 38 1 6.0484 2.0967 0.8918 39 1 5.5436 4.7284 -0.0002 40 1 9.9526 5.1556 0.0014 41 1 9.4472 7.7879 0.8905 42 1 9.4472 7.7878 -0.8895 43 1 11.4585 7.2852 2.1365 44 1 13.9147 7.2746 2.1564 45 1 16.0824 5.6554 2.7349 46 1 13.9163 7.2749 -2.1524 47 1 11.4601 7.2728 -2.1343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345844850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:30 Heat of formation + Delta-G solvation = -105.932367 kcal Electronic energy + Delta-G solvation = -27947.434953 eV Core-core repulsion = 23708.161506 eV Total energy + Delta-G solvation = -4239.273447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.51479 -40.11273 -38.53170 -37.62578 -36.15666 -35.09193 -34.82235 -33.52318 -32.94115 -30.43754 -29.37707 -28.79897 -27.34454 -26.33556 -24.48889 -23.04227 -22.07432 -21.09648 -20.93540 -20.18883 -20.08721 -18.41989 -17.77621 -17.40120 -16.74675 -16.63737 -16.29419 -15.88130 -15.48123 -15.41632 -15.13385 -15.04685 -14.31879 -14.23666 -14.01531 -13.76272 -13.66050 -13.33946 -13.26160 -12.91338 -12.56560 -12.55445 -12.54183 -12.06155 -12.01362 -11.94763 -11.71780 -11.54270 -11.37281 -11.18318 -11.05318 -10.73396 -10.47411 -10.38396 -9.77837 -9.66484 -9.53035 -9.46979 -9.39164 -9.23164 -8.83549 -7.58409 -7.46827 -6.87682 -4.47609 1.55287 2.16781 2.29573 2.63836 2.80346 2.98230 3.02254 3.05361 3.11217 3.36001 3.84659 3.87284 4.14373 4.46023 4.49278 4.50443 4.64221 4.73842 4.89244 4.96381 5.03727 5.07120 5.26493 5.29026 5.58394 5.64766 5.72326 5.74511 5.82457 5.86238 6.08099 6.16442 6.23539 6.32047 6.58190 6.86053 6.92230 6.96837 7.01820 7.16725 7.25179 7.50222 7.54192 7.72199 7.73879 7.88751 7.94869 7.99345 8.17661 8.21158 8.52975 8.77802 8.85533 10.06197 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.001389 C = 0.001348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.857022 B =20154.570848 C =20769.730575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.739 5.739 3 C 0.511 3.489 4 O -0.537 6.537 5 C -0.137 4.137 6 C -0.118 4.118 7 C 0.117 3.883 8 N -0.706 5.706 9 C 0.506 3.494 10 O -0.518 6.518 11 C 0.498 3.502 12 O -0.536 6.536 13 N -0.682 5.682 14 C 0.182 3.818 15 C -0.251 4.251 16 C -0.079 4.079 17 C -0.169 4.169 18 C 0.118 3.882 19 C -0.457 4.457 20 H 0.080 0.920 21 C 0.076 3.924 22 N -0.785 5.785 23 Si 0.910 3.090 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.229 4.229 28 C -0.067 4.067 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.403 0.597 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.414 0.586 40 H 0.414 0.586 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.283 0.717 46 H 0.094 0.906 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.991 -12.865 -1.561 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.391 5.391 3 C 0.297 3.703 4 O -0.413 6.413 5 C -0.178 4.178 6 C -0.157 4.157 7 C -0.006 4.006 8 N -0.360 5.360 9 C 0.287 3.713 10 O -0.393 6.393 11 C 0.277 3.723 12 O -0.414 6.414 13 N -0.334 5.334 14 C 0.061 3.939 15 C -0.253 4.253 16 C -0.098 4.098 17 C -0.189 4.189 18 C 0.115 3.885 19 C -0.486 4.486 20 H 0.098 0.902 21 C -0.143 4.143 22 N -0.410 5.410 23 Si 0.734 3.266 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.249 4.249 28 C -0.086 4.086 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.237 0.763 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.250 0.750 40 H 0.250 0.750 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.137 0.863 45 H 0.094 0.906 46 H 0.112 0.888 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.371 -12.245 -1.346 25.539 hybrid contribution 0.992 -0.502 0.192 1.128 sum -21.380 -12.747 -1.155 24.918 Atomic orbital electron populations 1.21544 0.79580 1.02265 1.02438 1.45845 1.07918 1.08873 1.76497 1.20758 0.90396 0.83570 0.75530 1.90742 1.70572 1.31259 1.48703 1.21552 0.91649 0.99394 1.05173 1.21539 0.93457 0.95818 1.04861 1.21441 0.93513 0.82666 1.03014 1.45720 1.06863 1.09568 1.73854 1.20425 0.83120 0.90166 0.77563 1.90777 1.55216 1.45808 1.47470 1.20059 0.84191 0.88833 0.79170 1.90729 1.55391 1.45465 1.49799 1.46491 1.05641 1.11395 1.69846 1.20129 0.92330 0.80207 1.01215 1.18932 0.91587 1.20770 0.94004 1.20558 0.94690 0.99397 0.95141 1.21308 0.92236 1.06521 0.98786 1.17683 0.93288 0.86591 0.90956 1.19689 0.91561 1.35411 1.01935 0.90193 1.25963 1.01128 0.92497 0.94756 1.69821 1.38839 1.21644 1.10689 0.86276 0.81537 0.79120 0.79638 1.19153 1.20216 1.18512 1.20969 0.93112 1.13727 0.97084 1.20406 0.94246 0.98686 0.95250 0.90630 0.92184 0.92179 0.76333 0.88240 0.88229 0.90106 0.90110 0.90842 0.90833 0.74992 0.74976 0.91696 0.91739 0.89318 0.86326 0.90634 0.88823 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 10.70 59.84 0.64 0.99 16 2 N -0.74 -3.24 5.71 -67.08 -0.38 -3.63 16 3 C 0.51 3.67 7.83 -10.99 -0.09 3.58 16 4 O -0.54 -6.27 15.98 5.55 0.09 -6.18 16 5 C -0.14 -0.62 5.70 -27.88 -0.16 -0.78 16 6 C -0.12 -0.79 4.62 -26.73 -0.12 -0.91 16 7 C 0.12 0.95 5.67 -4.04 -0.02 0.93 16 8 N -0.71 -7.66 5.55 -60.73 -0.34 -7.99 16 9 C 0.51 7.27 7.89 -11.58 -0.09 7.18 16 10 O -0.52 -8.58 16.48 5.50 0.09 -8.49 16 11 C 0.50 7.99 7.89 -11.58 -0.09 7.90 16 12 O -0.54 -9.36 16.48 5.50 0.09 -9.27 16 13 N -0.68 -11.47 5.54 -61.91 -0.34 -11.82 16 14 C 0.18 3.23 5.79 -5.19 -0.03 3.20 16 15 C -0.25 -5.18 5.27 -104.33 -0.55 -5.73 16 16 C -0.08 -1.75 9.67 -39.66 -0.38 -2.14 16 17 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 18 C 0.12 3.02 5.57 -106.83 -0.60 2.43 16 19 C -0.46 -11.72 9.05 -37.74 -0.34 -12.06 16 20 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 21 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 22 N -0.79 -19.65 10.95 55.55 0.61 -19.04 16 23 Si 0.91 18.06 29.60 -169.99 -5.03 13.03 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 25 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 26 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 27 C -0.23 -5.41 9.80 -38.88 -0.38 -5.79 16 28 C -0.07 -1.43 9.67 -39.66 -0.38 -1.81 16 29 H 0.07 0.10 8.14 -51.92 -0.42 -0.32 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.40 0.50 8.83 -40.82 -0.36 0.14 16 33 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.41 4.12 7.95 -40.82 -0.32 3.80 16 40 H 0.41 7.11 7.94 -40.82 -0.32 6.78 16 41 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 42 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 45 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 46 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 47 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 407.17 15.07 6.14 6.14 Total: -1.00 -32.06 407.17 -8.89 -40.95 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.79 Total: 12.15 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -3.03 Total: -5.84 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.45 Total: -42.48 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.27 Total: -23.94 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.06 -8.89 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345844850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.979 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds