Wall clock time and date at job start Wed Apr 1 2020 04:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34778 * 119.99946 * 2 1 4 4 O 1.21289 * 119.99671 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00012 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47035 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47131 * 179.97438 * 6 5 3 8 8 N 1.46498 * 109.47054 * 180.02562 * 7 6 5 9 9 C 1.34785 * 120.00103 * 180.02562 * 8 7 6 10 10 O 1.21347 * 119.99460 * 359.97438 * 9 8 7 11 11 C 1.49455 * 120.00020 * 179.97438 * 9 8 7 12 12 O 1.21343 * 119.99828 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99599 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99681 * 180.02562 * 13 11 9 15 15 C 1.50701 * 109.47362 * 179.97438 * 14 13 11 16 16 C 1.38632 * 119.74855 * 269.73233 * 15 14 13 17 17 C 1.37622 * 120.24185 * 179.71996 * 16 15 14 18 18 C 1.40711 * 119.74669 * 0.56508 * 17 16 15 19 19 C 1.41400 * 120.24519 * 179.68031 * 18 17 16 20 20 H 1.07993 * 120.00417 * 204.40825 * 19 18 17 21 21 C 1.39949 * 119.99722 * 24.41101 * 19 18 17 22 22 N 1.30829 * 120.00062 * 17.84366 * 21 19 18 23 23 Si 1.86798 * 120.00043 * 197.84420 * 21 19 18 24 24 H 1.48498 * 109.46821 * 90.00230 * 23 21 19 25 25 H 1.48501 * 109.47257 * 209.99803 * 23 21 19 26 26 H 1.48498 * 109.47318 * 330.00157 * 23 21 19 27 27 C 1.40712 * 119.51307 * 359.70755 * 18 17 16 28 28 C 1.37615 * 119.74605 * 359.97438 * 27 18 17 29 29 H 1.09008 * 109.46765 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47812 * 300.00397 * 1 2 3 31 31 H 1.09000 * 109.46834 * 60.01177 * 1 2 3 32 32 H 0.97003 * 120.00324 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47710 * 59.99644 * 5 3 2 34 34 H 1.09000 * 109.46871 * 299.98904 * 5 3 2 35 35 H 1.09007 * 109.47022 * 59.99542 * 6 5 3 36 36 H 1.08996 * 109.47190 * 299.99934 * 6 5 3 37 37 H 1.08999 * 109.47382 * 59.99704 * 7 6 5 38 38 H 1.09005 * 109.47114 * 299.99968 * 7 6 5 39 39 H 0.97005 * 120.00276 * 359.97438 * 8 7 6 40 40 H 0.96996 * 120.00336 * 359.97438 * 13 11 9 41 41 H 1.09007 * 109.47068 * 59.99799 * 14 13 11 42 42 H 1.08996 * 109.47220 * 300.00144 * 14 13 11 43 43 H 1.08000 * 119.87692 * 359.96552 * 16 15 14 44 44 H 1.08002 * 120.12182 * 180.27799 * 17 16 15 45 45 H 0.96994 * 119.99970 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.12698 * 179.97438 * 27 18 17 47 47 H 1.08000 * 119.87918 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5323 2.2176 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1558 2.6098 -0.0002 7 6 5.6857 2.6099 0.0011 8 7 6.1740 3.9911 0.0009 9 6 7.4991 4.2374 0.0014 10 8 8.2876 3.3151 0.0024 11 6 7.9972 5.6465 0.0007 12 8 7.2086 6.5688 0.0002 13 7 9.3223 5.8928 0.0006 14 6 9.8106 7.2740 0.0005 15 6 11.3176 7.2741 0.0011 16 6 12.0050 7.2801 1.2050 17 6 13.3812 7.2744 1.2174 18 6 14.0903 7.2746 0.0020 19 6 15.5043 7.2757 0.0025 20 1 16.0443 7.6623 -0.8491 21 6 16.2040 6.7756 1.1065 22 7 15.5973 6.0023 1.9700 23 14 18.0042 7.2123 1.3474 24 1 18.1085 8.4528 2.1570 25 1 18.6929 6.1016 2.0527 26 1 18.6422 7.4296 0.0242 27 6 13.3820 7.2744 -1.2138 28 6 12.0059 7.2734 -1.2024 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 1.9500 -0.8400 0.0004 33 1 4.0095 0.6532 -0.8890 34 1 4.0087 0.6538 0.8909 35 1 3.7920 3.1243 0.8893 36 1 3.7928 3.1230 -0.8906 37 1 6.0498 2.0953 -0.8882 38 1 6.0484 2.0967 0.8918 39 1 5.5436 4.7284 -0.0002 40 1 9.9526 5.1556 0.0014 41 1 9.4472 7.7879 0.8905 42 1 9.4472 7.7878 -0.8895 43 1 11.4585 7.2852 2.1365 44 1 13.9147 7.2746 2.1564 45 1 16.0824 5.6554 2.7349 46 1 13.9163 7.2749 -2.1524 47 1 11.4601 7.2728 -2.1343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345844850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:29 Heat of formation + Delta-G solvation = -129.689325 kcal Electronic energy + Delta-G solvation = -27948.465132 eV Core-core repulsion = 23708.161506 eV Total energy + Delta-G solvation = -4240.303626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.68885 -40.69472 -39.87716 -39.25795 -37.05576 -36.32911 -35.58327 -35.12755 -33.72597 -32.14467 -31.18217 -29.50401 -28.80140 -27.08956 -25.85398 -24.26295 -22.91277 -22.80387 -21.86496 -21.59012 -21.13810 -19.59114 -19.24293 -18.35920 -17.84484 -17.34841 -17.21230 -16.86207 -16.81144 -16.50627 -16.38733 -15.98334 -15.74579 -15.47119 -15.43012 -14.84169 -14.83423 -14.48105 -14.21688 -14.01895 -13.83201 -13.59405 -13.44505 -13.31442 -13.14514 -12.99507 -12.85664 -12.79700 -12.72349 -12.51674 -12.47119 -12.10555 -11.89760 -11.52114 -11.29526 -11.07560 -10.98846 -10.73283 -10.32650 -10.19904 -10.11613 -9.40361 -9.29454 -8.67326 -6.37768 0.34488 0.78018 1.13797 1.35423 1.39688 1.51929 1.57847 1.65396 2.14428 2.19902 2.31838 2.61156 2.86672 3.46923 3.69390 3.74221 3.97291 4.00941 4.12308 4.28297 4.29364 4.50207 4.50694 4.53662 4.62871 4.63901 4.64475 4.73064 4.75011 4.95420 5.04261 5.10807 5.10925 5.13987 5.20269 5.27113 5.34958 5.42725 5.47277 5.68049 5.86221 5.98147 6.08275 6.18322 6.35338 6.37683 6.57356 6.67238 6.72080 6.91207 6.94304 7.00046 7.29228 8.29144 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.001389 C = 0.001348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.857022 B =20154.570848 C =20769.730575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.726 5.726 3 C 0.504 3.496 4 O -0.591 6.591 5 C -0.130 4.130 6 C -0.110 4.110 7 C 0.117 3.883 8 N -0.691 5.691 9 C 0.510 3.490 10 O -0.543 6.543 11 C 0.501 3.499 12 O -0.549 6.549 13 N -0.685 5.685 14 C 0.190 3.810 15 C -0.235 4.235 16 C -0.081 4.081 17 C -0.193 4.193 18 C 0.087 3.913 19 C -0.496 4.496 20 H 0.077 0.923 21 C 0.037 3.963 22 N -0.819 5.819 23 Si 0.982 3.018 24 H -0.262 1.262 25 H -0.268 1.268 26 H -0.258 1.258 27 C -0.244 4.244 28 C -0.066 4.066 29 H 0.108 0.892 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.421 0.579 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.419 0.581 40 H 0.413 0.587 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.289 0.711 46 H 0.099 0.901 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 -14.272 -1.841 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.379 5.379 3 C 0.292 3.708 4 O -0.472 6.472 5 C -0.170 4.170 6 C -0.149 4.149 7 C -0.005 4.005 8 N -0.344 5.344 9 C 0.290 3.710 10 O -0.420 6.420 11 C 0.281 3.719 12 O -0.428 6.428 13 N -0.336 5.336 14 C 0.068 3.932 15 C -0.236 4.236 16 C -0.100 4.100 17 C -0.212 4.212 18 C 0.084 3.916 19 C -0.525 4.525 20 H 0.095 0.905 21 C -0.179 4.179 22 N -0.444 5.444 23 Si 0.803 3.197 24 H -0.187 1.187 25 H -0.192 1.192 26 H -0.182 1.182 27 C -0.264 4.264 28 C -0.085 4.085 29 H 0.127 0.873 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.258 0.742 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.256 0.744 40 H 0.249 0.751 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.117 0.883 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.462 -13.704 -1.634 27.220 hybrid contribution 1.061 -0.111 0.243 1.094 sum -22.401 -13.816 -1.391 26.356 Atomic orbital electron populations 1.21629 0.79454 1.04030 1.01135 1.45804 1.08188 1.09040 1.74856 1.21255 0.91500 0.83407 0.74657 1.90721 1.71753 1.33211 1.51491 1.21560 0.89668 0.98250 1.07525 1.21428 0.92230 0.97328 1.03876 1.21636 0.94244 0.80962 1.03695 1.45784 1.05691 1.11172 1.71723 1.20053 0.84029 0.88885 0.77990 1.90775 1.55981 1.45965 1.49317 1.20309 0.83598 0.89638 0.78312 1.90725 1.55586 1.46170 1.50315 1.46315 1.06143 1.10812 1.70303 1.20002 0.90036 0.80981 1.02142 1.19201 0.93303 1.17991 0.93147 1.20781 0.93885 0.98599 0.96709 1.21265 0.93413 1.08511 0.98023 1.18023 0.93967 0.87634 0.91968 1.19920 0.92130 1.37369 1.03089 0.90482 1.26767 1.05442 0.91745 0.93965 1.69869 1.40732 1.22468 1.11351 0.85203 0.75979 0.78982 0.79585 1.18694 1.19231 1.18167 1.21167 0.94319 1.14195 0.96710 1.20710 0.93555 0.97422 0.96779 0.87312 0.93541 0.93511 0.74243 0.85762 0.85816 0.91206 0.91127 0.90035 0.90148 0.74410 0.75082 0.91111 0.90585 0.87571 0.88096 0.89981 0.88323 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.70 127.77 1.37 1.95 16 2 N -0.73 -5.00 5.71 -484.53 -2.77 -7.77 16 3 C 0.50 6.58 7.83 87.65 0.69 7.27 16 4 O -0.59 -13.89 15.98 -3.06 -0.05 -13.94 16 5 C -0.13 -0.85 5.70 29.85 0.17 -0.68 16 6 C -0.11 -1.29 4.62 30.60 0.14 -1.15 16 7 C 0.12 1.63 5.67 86.38 0.49 2.12 16 8 N -0.69 -13.77 5.55 -464.40 -2.58 -16.35 16 9 C 0.51 13.82 7.89 87.27 0.69 14.50 16 10 O -0.54 -17.20 16.48 -3.24 -0.05 -17.25 16 11 C 0.50 15.23 7.89 87.27 0.69 15.92 16 12 O -0.55 -18.19 16.48 -3.22 -0.05 -18.24 16 13 N -0.68 -21.86 5.54 -468.14 -2.59 -24.45 16 14 C 0.19 6.33 5.79 85.63 0.50 6.83 16 15 C -0.23 -9.39 5.27 -19.67 -0.10 -9.49 16 16 C -0.08 -3.58 9.67 22.22 0.21 -3.37 16 17 C -0.19 -9.88 8.70 22.73 0.20 -9.68 16 18 C 0.09 4.58 5.57 -21.29 -0.12 4.46 16 19 C -0.50 -26.31 9.05 23.46 0.21 -26.09 16 20 H 0.08 3.95 7.91 -2.91 -0.02 3.92 16 21 C 0.04 1.81 5.14 85.26 0.44 2.25 16 22 N -0.82 -42.11 10.95 21.83 0.24 -41.87 16 23 Si 0.98 37.49 29.60 68.60 2.03 39.52 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 27 C -0.24 -11.62 9.80 22.73 0.22 -11.40 16 28 C -0.07 -2.74 9.67 22.22 0.21 -2.52 16 29 H 0.11 0.02 8.14 -2.38 -0.02 0.00 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.42 -0.17 8.83 -92.71 -0.82 -0.99 16 33 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.07 0.99 8.10 -2.38 -0.02 0.97 16 36 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.42 7.69 7.95 -92.70 -0.74 6.96 16 40 H 0.41 13.63 7.94 -92.71 -0.74 12.90 16 41 H 0.07 2.31 8.08 -2.38 -0.02 2.29 16 42 H 0.08 2.41 8.08 -2.39 -0.02 2.39 16 43 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 44 H 0.10 5.45 6.16 -2.91 -0.02 5.44 16 45 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 46 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 47 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -71.48 407.17 -1.08 -72.56 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: -1.26 Total: 36.87 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 6.01 Total: -9.07 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -7.70 Total: -90.43 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.16 Total: -49.44 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -71.48 -1.08 -72.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345844850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.130 kcal (2) G-P(sol) polarization free energy of solvation -71.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds