Wall clock time and date at job start Wed Apr 1 2020 04:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 119.99981 * 2 1 4 4 H 1.08000 * 120.00157 * 202.86248 * 3 2 1 5 5 C 1.38817 * 120.00459 * 22.86228 * 3 2 1 6 6 N 1.31615 * 119.99514 * 10.90256 * 5 3 2 7 7 Si 1.86792 * 120.00223 * 190.90454 * 5 3 2 8 8 H 1.48495 * 109.47440 * 89.99870 * 7 5 3 9 9 H 1.48505 * 109.46979 * 209.99924 * 7 5 3 10 10 H 1.48497 * 109.47218 * 329.99582 * 7 5 3 11 11 C 1.46495 * 119.99844 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47406 * 270.00204 * 11 2 1 13 13 O 1.42899 * 109.47106 * 65.00091 * 12 11 2 14 14 C 1.42897 * 114.00240 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47257 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.47337 * 65.00111 * 15 14 13 17 17 C 1.46500 * 119.99493 * 270.00055 * 16 15 14 18 18 C 1.34773 * 119.99943 * 89.99677 * 16 15 14 19 19 O 1.21563 * 120.00121 * 354.40548 * 18 16 15 20 20 C 1.47788 * 119.99683 * 174.12157 * 18 16 15 21 21 N 1.32819 * 120.07609 * 354.56471 * 20 18 16 22 22 C 1.31671 * 122.01246 * 179.69938 * 21 20 18 23 23 C 1.38398 * 121.70019 * 0.58127 * 22 21 20 24 24 C 1.38858 * 119.13166 * 359.71302 * 23 22 21 25 25 O 1.34424 * 134.63279 * 180.02562 * 24 23 22 26 26 C 1.34455 * 110.85319 * 179.97438 * 25 24 23 27 27 C 1.34305 * 110.16516 * 0.02562 * 26 25 24 28 28 C 1.40203 * 120.06972 * 174.83376 * 20 18 16 29 29 H 1.09000 * 109.47395 * 274.83777 * 1 2 3 30 30 H 1.08999 * 109.46588 * 34.84115 * 1 2 3 31 31 H 1.08997 * 109.47060 * 154.83278 * 1 2 3 32 32 H 0.97003 * 120.00478 * 180.02562 * 6 5 3 33 33 H 1.09008 * 109.46924 * 150.00666 * 11 2 1 34 34 H 1.08997 * 109.47232 * 30.00532 * 11 2 1 35 35 H 1.09006 * 109.46918 * 305.00098 * 12 11 2 36 36 H 1.09003 * 109.47189 * 185.00097 * 12 11 2 37 37 H 1.09001 * 109.46895 * 60.00143 * 14 13 12 38 38 H 1.09003 * 109.47157 * 299.99784 * 14 13 12 39 39 H 1.09006 * 109.47213 * 305.00081 * 15 14 13 40 40 H 1.09000 * 109.47765 * 185.00206 * 15 14 13 41 41 H 1.09000 * 109.47334 * 265.10264 * 17 16 15 42 42 H 1.09001 * 109.47431 * 25.11155 * 17 16 15 43 43 H 1.09009 * 109.46620 * 145.10716 * 17 16 15 44 44 H 1.08003 * 119.14976 * 180.27015 * 22 21 20 45 45 H 1.07997 * 120.43322 * 179.69763 * 23 22 21 46 46 H 1.08000 * 124.91926 * 179.97438 * 26 25 24 47 47 H 1.07997 * 126.89569 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1661 1.2227 -0.3634 5 6 1.5375 2.3409 0.4671 6 7 0.3886 2.2649 1.1046 7 14 2.3443 4.0028 0.1907 8 1 1.8752 4.5727 -1.0978 9 1 1.9796 4.9206 1.2998 10 1 3.8193 3.8365 0.1506 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4433 13 8 1.2060 -1.9927 2.0822 14 6 1.3323 -2.4162 3.4412 15 6 -0.0566 -2.6901 4.0212 16 7 -0.6652 -3.8219 3.3176 17 6 -1.4793 -3.5890 2.1221 18 6 -0.4760 -5.0772 3.7701 19 8 0.2806 -5.2807 4.6996 20 6 -1.1931 -6.2056 3.1403 21 7 -2.1042 -5.9746 2.2019 22 6 -2.7614 -6.9511 1.6117 23 6 -2.5477 -8.2772 1.9452 24 6 -1.6117 -8.5858 2.9235 25 8 -1.1651 -9.7265 3.4768 26 6 -0.2278 -9.4725 4.4067 27 6 -0.0189 -8.1494 4.5041 28 6 -0.9172 -7.5220 3.5362 29 1 -0.3634 0.0867 1.0240 30 1 -0.3632 0.8435 -0.5871 31 1 -0.3633 -0.9301 -0.4370 32 1 -0.0395 3.0720 1.4306 33 1 3.1500 -1.1385 -0.5133 34 1 1.6085 -2.0285 -0.5130 35 1 2.9642 -0.9123 1.9820 36 1 3.0732 -2.6058 1.4449 37 1 1.8210 -1.6336 4.0216 38 1 1.9296 -3.3270 3.4839 39 1 -0.6828 -1.8064 3.8978 40 1 0.0325 -2.9269 5.0814 41 1 -2.5308 -3.5323 2.4039 42 1 -1.1776 -2.6521 1.6538 43 1 -1.3353 -4.4095 1.4190 44 1 -3.4895 -6.7107 0.8511 45 1 -3.1017 -9.0616 1.4512 46 1 0.2826 -10.2236 4.9913 47 1 0.6743 -7.6493 5.1641 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479679260.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:44 Heat of formation + Delta-G solvation = -6.353514 kcal Electronic energy + Delta-G solvation = -30727.240923 eV Core-core repulsion = 26492.285539 eV Total energy + Delta-G solvation = -4234.955384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.74407 -41.29992 -39.68821 -38.92209 -37.25217 -36.43624 -33.98913 -33.52061 -33.00778 -31.45371 -30.67184 -29.56578 -27.78273 -27.57201 -25.95259 -24.80664 -24.34375 -23.91803 -22.75454 -22.12159 -20.75296 -19.03138 -18.81561 -18.65703 -17.80429 -17.55241 -17.42230 -17.17061 -16.95338 -16.64867 -16.43224 -16.26684 -15.45479 -15.42958 -15.25713 -15.20476 -14.67785 -14.39849 -14.25496 -14.05109 -13.90682 -13.78805 -13.52333 -13.21567 -12.99881 -12.95468 -12.90082 -12.69447 -12.59804 -12.43746 -12.26078 -11.98860 -11.77384 -11.69927 -11.42858 -11.37125 -10.60561 -10.59243 -10.45600 -10.32786 -9.75539 -9.37337 -8.70467 -7.75190 -5.23604 -0.76748 0.08531 1.22440 1.47962 1.48963 1.57287 1.59068 1.61154 1.85912 2.54166 2.70692 2.89838 3.00015 3.26115 3.36998 3.49956 3.77659 3.79583 4.01460 4.07277 4.08846 4.21353 4.30974 4.37579 4.43633 4.52895 4.54693 4.59033 4.64577 4.65011 4.74737 4.77361 4.86786 4.92070 4.97436 5.00302 5.14088 5.17095 5.25285 5.38554 5.43411 5.49928 5.69390 5.87281 5.89522 6.25339 6.38549 6.45236 6.62543 6.99969 7.22328 7.94741 8.40231 9.27294 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022381 B = 0.002285 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.763330 B =12252.092518 C =12624.323250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.612 5.612 3 C -0.262 4.262 4 H 0.070 0.930 5 C -0.053 4.053 6 N -0.933 5.933 7 Si 0.966 3.034 8 H -0.287 1.287 9 H -0.297 1.297 10 H -0.270 1.270 11 C 0.151 3.849 12 C 0.052 3.948 13 O -0.381 6.381 14 C 0.053 3.947 15 C 0.124 3.876 16 N -0.583 5.583 17 C 0.101 3.899 18 C 0.560 3.440 19 O -0.565 6.565 20 C 0.104 3.896 21 N -0.460 5.460 22 C 0.099 3.901 23 C -0.114 4.114 24 C 0.061 3.939 25 O -0.190 6.190 26 C 0.037 3.963 27 C -0.219 4.219 28 C -0.153 4.153 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.021 0.979 32 H 0.245 0.755 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.022 0.978 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.215 0.785 45 H 0.187 0.813 46 H 0.263 0.737 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.295 -26.477 4.036 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.335 5.335 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.249 4.249 6 N -0.580 5.580 7 Si 0.795 3.205 8 H -0.214 1.214 9 H -0.224 1.224 10 H -0.195 1.195 11 C 0.024 3.976 12 C -0.027 4.027 13 O -0.300 6.300 14 C -0.025 4.025 15 C 0.002 3.998 16 N -0.313 5.313 17 C -0.041 4.041 18 C 0.348 3.652 19 O -0.444 6.444 20 C -0.037 4.037 21 N -0.174 5.174 22 C -0.055 4.055 23 C -0.134 4.134 24 C 0.006 3.994 25 O -0.089 6.089 26 C -0.027 4.027 27 C -0.239 4.239 28 C -0.157 4.157 29 H 0.025 0.975 30 H 0.027 0.973 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.231 0.769 45 H 0.205 0.795 46 H 0.278 0.722 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.462 -25.816 4.136 26.932 hybrid contribution 1.013 0.737 0.733 1.452 sum -5.449 -25.079 4.870 26.122 Atomic orbital electron populations 1.20370 0.82462 0.94739 0.97450 1.44094 1.02343 1.01256 1.85805 1.19547 0.98430 0.86763 1.34499 0.91180 1.25779 0.98561 1.01663 0.98858 1.70260 1.19168 1.27121 1.41431 0.85281 0.78383 0.80161 0.76678 1.21362 1.22401 1.19458 1.21051 0.96735 0.87332 0.92456 1.23230 0.85627 0.97047 0.96786 1.87920 1.30241 1.87370 1.24462 1.22789 0.97722 0.97679 0.84347 1.21560 0.92970 0.88724 0.96557 1.47740 1.49585 1.05071 1.28932 1.22109 0.93903 1.02401 0.85702 1.18137 0.81402 0.82827 0.82884 1.90704 1.38472 1.84535 1.30698 1.20438 0.96574 0.90748 0.95957 1.68177 1.05781 1.36897 1.06547 1.23460 0.97323 0.86426 0.98260 1.21712 0.96529 0.99802 0.95343 1.20071 0.98168 0.83536 0.97605 1.84003 1.48176 1.30738 1.46015 1.25091 0.89582 0.97604 0.90393 1.22771 1.03964 0.94077 1.03041 1.20921 1.00436 0.94089 1.00289 0.97521 0.97311 0.96056 0.94570 0.91238 0.92290 0.95949 0.93230 0.93076 0.94113 0.89189 0.88201 0.91582 0.92300 0.88950 0.76882 0.79550 0.72160 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.98 8.61 127.77 1.10 11.08 16 2 N -0.61 -31.39 2.89 -726.93 -2.10 -33.49 16 3 C -0.26 -14.57 9.67 84.04 0.81 -13.76 16 4 H 0.07 3.76 7.84 -2.91 -0.02 3.73 16 5 C -0.05 -3.04 5.14 84.86 0.44 -2.60 16 6 N -0.93 -56.04 10.59 21.65 0.23 -55.81 16 7 Si 0.97 45.77 29.57 68.60 2.03 47.80 16 8 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 9 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 C 0.15 6.24 6.11 86.38 0.53 6.77 16 12 C 0.05 2.06 6.28 71.98 0.45 2.51 16 13 O -0.38 -15.27 8.81 -148.98 -1.31 -16.58 16 14 C 0.05 1.82 6.28 71.98 0.45 2.28 16 15 C 0.12 3.90 5.75 86.38 0.50 4.40 16 16 N -0.58 -18.01 2.84 -850.24 -2.41 -20.42 16 17 C 0.10 2.84 8.90 127.77 1.14 3.97 16 18 C 0.56 17.88 7.64 86.77 0.66 18.55 16 19 O -0.56 -20.08 14.87 -3.91 -0.06 -20.14 16 20 C 0.10 2.86 6.60 42.00 0.28 3.14 16 21 N -0.46 -10.38 6.18 -184.54 -1.14 -11.52 16 22 C 0.10 1.42 11.13 84.76 0.94 2.37 16 23 C -0.11 -1.48 10.13 22.46 0.23 -1.25 16 24 C 0.06 1.16 7.48 23.11 0.17 1.34 16 25 O -0.19 -3.14 10.57 -5.14 -0.05 -3.19 16 26 C 0.04 0.50 11.97 66.92 0.80 1.30 16 27 C -0.22 -4.65 10.32 23.44 0.24 -4.41 16 28 C -0.15 -3.80 6.16 -20.04 -0.12 -3.92 16 29 H 0.01 0.37 7.37 -2.39 -0.02 0.35 16 30 H 0.01 0.46 7.25 -2.39 -0.02 0.44 16 31 H 0.02 0.94 7.84 -2.39 -0.02 0.92 16 32 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.07 2.67 8.03 -2.38 -0.02 2.66 16 34 H 0.06 2.25 7.86 -2.39 -0.02 2.23 16 35 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 2.86 8.07 -2.38 -0.02 2.84 16 40 H 0.10 2.94 7.51 -2.39 -0.02 2.92 16 41 H 0.07 1.67 8.02 -2.39 -0.02 1.65 16 42 H 0.06 1.91 7.22 -2.39 -0.02 1.89 16 43 H 0.09 2.49 5.74 -2.38 -0.01 2.48 16 44 H 0.21 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.19 0.91 8.06 -2.91 -0.02 0.88 16 46 H 0.26 0.62 8.06 -2.91 -0.02 0.60 16 47 H 0.16 3.68 7.31 -2.91 -0.02 3.66 16 Total: -1.00 -76.19 390.93 4.78 -71.41 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.98 Total: 10.20 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 8.62 Total: 31.75 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -5.42 Total: -121.25 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.43 Total: -39.91 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -76.19 4.78 -71.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479679260.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.057 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds