Wall clock time and date at job start Wed Apr 1 2020 04:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46745 * 111.00268 * 2 1 4 4 C 1.53419 * 108.59020 * 285.43100 * 3 2 1 5 5 O 1.43104 * 107.91598 * 296.67783 * 4 3 2 6 6 C 1.36013 * 116.70806 * 45.48095 * 5 4 3 7 7 C 1.39082 * 118.58514 * 165.05016 * 6 5 4 8 8 C 1.37702 * 120.40838 * 179.38934 * 7 6 5 9 9 C 1.39697 * 119.88376 * 0.60640 * 8 7 6 10 10 C 1.47612 * 120.09735 * 179.79951 * 9 8 7 11 11 O 1.21586 * 120.00042 * 179.72665 * 10 9 8 12 12 N 1.34781 * 120.00217 * 359.71825 * 10 9 8 13 13 C 1.46497 * 120.00378 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47453 * 180.02562 * 13 12 10 15 15 O 1.42901 * 113.28192 * 313.06542 * 14 13 12 16 16 C 1.53495 * 114.20885 * 179.97438 * 14 13 12 17 17 N 1.47063 * 87.98752 * 220.34588 * 16 14 13 18 18 C 1.36935 * 136.06032 * 207.08713 * 17 16 14 19 19 H 1.08002 * 119.99824 * 6.49422 * 18 17 16 20 20 C 1.38813 * 120.00278 * 186.49512 * 18 17 16 21 21 N 1.31620 * 119.99721 * 6.70578 * 20 18 17 22 22 Si 1.86796 * 120.00005 * 186.43238 * 20 18 17 23 23 H 1.48499 * 109.47369 * 84.98721 * 22 20 18 24 24 H 1.48500 * 109.47154 * 204.98480 * 22 20 18 25 25 H 1.48501 * 109.47145 * 324.99099 * 22 20 18 26 26 C 1.47068 * 87.88544 * 27.33896 * 17 16 14 27 27 C 1.39554 * 119.80364 * 359.51636 * 9 8 7 28 28 C 1.38733 * 120.12755 * 0.22595 * 27 9 8 29 29 H 1.09000 * 109.47117 * 185.40812 * 1 2 3 30 30 H 1.09001 * 109.46670 * 305.40703 * 1 2 3 31 31 H 1.08997 * 109.47095 * 65.40823 * 1 2 3 32 32 H 1.09000 * 109.61857 * 45.16340 * 3 2 1 33 33 H 1.09006 * 109.62026 * 165.69739 * 3 2 1 34 34 H 1.09001 * 109.77051 * 56.28389 * 4 3 2 35 35 H 1.09006 * 109.76871 * 177.07244 * 4 3 2 36 36 H 1.07999 * 119.79994 * 359.70199 * 7 6 5 37 37 H 1.08008 * 120.06072 * 180.33439 * 8 7 6 38 38 H 0.96998 * 119.99596 * 0.02562 * 12 10 9 39 39 H 1.09005 * 109.47237 * 59.99346 * 13 12 10 40 40 H 1.09005 * 109.46802 * 300.00431 * 13 12 10 41 41 H 0.96705 * 113.99953 * 46.93200 * 15 14 13 42 42 H 1.08999 * 113.47047 * 105.56358 * 16 14 13 43 43 H 1.09007 * 113.51565 * 335.13333 * 16 14 13 44 44 H 0.97002 * 119.99507 * 179.72842 * 21 20 18 45 45 H 1.09006 * 113.46436 * 87.43772 * 26 17 16 46 46 H 1.08994 * 113.47260 * 217.88053 * 26 17 16 47 47 H 1.08005 * 119.93165 * 180.19830 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3700 0.0000 4 6 1.8090 1.9652 -1.4017 5 8 2.5945 1.1933 -2.3155 6 6 2.5154 -0.1594 -2.1981 7 6 2.9958 -0.9469 -3.2390 8 6 2.9458 -2.3204 -3.1542 9 6 2.3981 -2.9284 -2.0221 10 6 2.3381 -4.4003 -1.9282 11 8 1.8656 -4.9277 -0.9398 12 7 2.8071 -5.1597 -2.9381 13 6 2.7471 -6.6205 -2.8452 14 6 3.3404 -7.2371 -4.1135 15 8 2.8545 -6.6349 -5.3149 16 6 3.3323 -8.7719 -4.1304 17 7 4.6716 -8.7207 -4.7356 18 6 5.4139 -9.5265 -5.5572 19 1 4.9695 -10.4090 -5.9931 20 6 6.7375 -9.2090 -5.8296 21 7 7.3184 -8.2113 -5.1975 22 14 7.6963 -10.2025 -7.0878 23 1 7.4358 -9.6636 -8.4468 24 1 9.1480 -10.1106 -6.7889 25 1 7.2674 -11.6229 -7.0280 26 6 4.8655 -7.4262 -4.0651 27 6 1.9132 -2.1402 -0.9775 28 6 1.9703 -0.7568 -1.0646 29 1 -0.3633 -1.0231 0.0969 30 1 -0.3633 0.5954 0.8376 31 1 -0.3633 0.4277 -0.9344 32 1 1.4502 1.9711 0.7281 33 1 3.0549 1.3551 0.2537 34 1 0.7580 1.9166 -1.6865 35 1 2.1463 3.0018 -1.4098 36 1 3.4153 -0.4784 -4.1170 37 1 3.3255 -2.9266 -3.9636 38 1 3.1843 -4.7390 -3.7265 39 1 1.7090 -6.9355 -2.7389 40 1 3.3182 -6.9532 -1.9784 41 1 2.8613 -5.6680 -5.3008 42 1 2.5740 -9.1948 -4.7895 43 1 3.3221 -9.2178 -3.1358 44 1 8.2445 -7.9920 -5.3851 45 1 5.2597 -7.5165 -3.0528 46 1 5.4135 -6.7026 -4.6684 47 1 1.4922 -2.6081 -0.0998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484279232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:54 Heat of formation + Delta-G solvation = -7.416564 kcal Electronic energy + Delta-G solvation = -30185.860884 eV Core-core repulsion = 25950.859404 eV Total energy + Delta-G solvation = -4235.001481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.60552 -40.02569 -38.82348 -37.37057 -36.93673 -35.05777 -34.03210 -32.07527 -31.43934 -30.86055 -29.35174 -28.45588 -26.46883 -25.59211 -24.85679 -24.72688 -23.09167 -21.99800 -21.53043 -20.05919 -19.40440 -18.65980 -18.06911 -17.30566 -16.84705 -16.49906 -15.89372 -15.68697 -15.50980 -15.30530 -15.02280 -14.90906 -14.75115 -14.16107 -14.11065 -14.01026 -13.89518 -13.54017 -13.47458 -13.24402 -12.76508 -12.67050 -12.58151 -12.45042 -12.23810 -12.02731 -11.84462 -11.46760 -11.34925 -11.15248 -10.85618 -10.73318 -10.46424 -10.10399 -9.85650 -9.79628 -9.50042 -9.19853 -8.92368 -8.81031 -8.73135 -8.36762 -6.90976 -5.79371 -3.09682 0.61070 0.96742 2.65625 2.76770 3.01119 3.27497 3.40492 3.44726 3.46471 3.61579 3.97905 4.34024 4.39641 4.42768 4.43600 4.46682 4.61766 4.72307 4.82801 4.86481 4.89423 4.95101 5.01533 5.11927 5.19855 5.25073 5.31966 5.37002 5.53060 5.59061 5.74006 5.76462 5.81059 5.99832 6.02788 6.12831 6.29590 6.34506 6.40918 6.52480 6.54531 6.55349 6.97745 7.01047 7.07915 7.44983 7.46800 7.93958 8.07170 8.21154 9.02026 9.68631 10.60387 11.39542 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.002081 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.417874 B =13454.083672 C =14250.553343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.489 5.489 3 C 0.015 3.985 4 C 0.019 3.981 5 O -0.306 6.306 6 C 0.111 3.889 7 C -0.138 4.138 8 C -0.060 4.060 9 C -0.150 4.150 10 C 0.563 3.437 11 O -0.539 6.539 12 N -0.719 5.719 13 C 0.108 3.892 14 C 0.055 3.945 15 O -0.521 6.521 16 C 0.134 3.866 17 N -0.599 5.599 18 C -0.214 4.214 19 H 0.082 0.918 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.144 3.856 27 C -0.021 4.021 28 C 0.014 3.986 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.396 0.604 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.359 0.641 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.254 0.746 45 H 0.039 0.961 46 H 0.065 0.935 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.972 23.207 9.125 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.206 5.206 3 C -0.113 4.113 4 C -0.058 4.058 5 O -0.219 6.219 6 C 0.063 3.937 7 C -0.157 4.157 8 C -0.080 4.080 9 C -0.154 4.154 10 C 0.351 3.649 11 O -0.417 6.417 12 N -0.373 5.373 13 C -0.016 4.016 14 C 0.012 3.988 15 O -0.324 6.324 16 C 0.007 3.993 17 N -0.324 5.324 18 C -0.341 4.341 19 H 0.100 0.900 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.745 3.255 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.017 3.983 27 C -0.042 4.042 28 C -0.082 4.082 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.232 0.768 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.205 0.795 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.831 21.942 9.794 27.725 hybrid contribution 0.644 0.734 -1.230 1.570 sum -13.187 22.676 8.564 27.595 Atomic orbital electron populations 1.22631 0.84864 1.03860 1.01034 1.59187 1.08749 1.12569 1.40102 1.23004 1.03205 0.88370 0.96706 1.23612 0.95809 0.96144 0.90196 1.86295 1.64606 1.14463 1.56500 1.19286 0.98739 0.83064 0.92614 1.20387 1.04428 0.92627 0.98212 1.21131 0.95998 0.93958 0.96885 1.19727 1.05946 0.93139 0.96610 1.18042 0.77829 0.86291 0.82779 1.90779 1.45649 1.74369 1.30928 1.45839 1.62941 1.07570 1.20908 1.21966 1.02079 0.78266 0.99322 1.23501 0.97299 0.95739 0.82257 1.86650 1.86692 1.22469 1.36634 1.22379 0.90364 0.89574 0.97001 1.45364 1.13208 1.21080 1.52787 1.18899 0.92023 1.04750 1.18472 0.89989 1.24816 0.96228 0.99123 1.00312 1.69837 1.12291 1.31079 1.43580 0.86097 0.79029 0.79314 0.81055 1.21431 1.21669 1.20652 1.22690 0.89714 0.89631 0.96229 1.20882 0.95153 0.90403 0.97754 1.18581 1.06509 0.93326 0.89810 0.90127 0.90322 0.94798 0.88058 0.88555 0.91372 0.86597 0.84258 0.84535 0.76755 0.90828 0.89946 0.79510 0.93016 0.93286 0.93622 0.94374 0.91683 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.19 60.06 0.55 0.69 16 2 N -0.49 -4.12 4.86 -178.70 -0.87 -4.99 16 3 C 0.01 0.09 6.02 -3.69 -0.02 0.07 16 4 C 0.02 0.11 7.06 37.37 0.26 0.38 16 5 O -0.31 -2.86 10.39 -19.78 -0.21 -3.07 16 6 C 0.11 1.14 6.48 -38.90 -0.25 0.89 16 7 C -0.14 -1.32 9.91 -39.46 -0.39 -1.71 16 8 C -0.06 -0.59 9.53 -39.23 -0.37 -0.96 16 9 C -0.15 -1.77 5.87 -105.04 -0.62 -2.39 16 10 C 0.56 7.94 7.77 -12.43 -0.10 7.84 16 11 O -0.54 -9.36 16.33 5.29 0.09 -9.27 16 12 N -0.72 -9.36 5.29 -61.32 -0.32 -9.68 16 13 C 0.11 1.64 5.42 -4.05 -0.02 1.62 16 14 C 0.05 1.00 1.74 -89.97 -0.16 0.84 16 15 O -0.52 -9.27 13.56 -35.23 -0.48 -9.75 16 16 C 0.13 2.77 8.10 -8.51 -0.07 2.71 16 17 N -0.60 -15.57 3.76 -184.58 -0.69 -16.27 16 18 C -0.21 -6.11 10.73 -15.06 -0.16 -6.27 16 19 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.46 11.81 55.49 0.66 -26.80 16 22 Si 0.91 22.36 29.56 -169.99 -5.02 17.33 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.14 3.29 6.66 -8.37 -0.06 3.23 16 27 C -0.02 -0.25 9.00 -38.91 -0.35 -0.60 16 28 C 0.01 0.14 5.12 -83.61 -0.43 -0.29 16 29 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16 30 H 0.08 0.34 7.98 -51.93 -0.41 -0.07 16 31 H 0.03 0.20 6.89 -51.93 -0.36 -0.15 16 32 H 0.10 0.35 7.90 -51.93 -0.41 -0.06 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.36 6.80 -51.93 -0.35 0.01 16 35 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.14 1.02 6.40 -52.48 -0.34 0.69 16 38 H 0.40 4.25 4.97 -40.82 -0.20 4.05 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.32 7.89 -51.93 -0.41 0.91 16 41 H 0.36 4.63 7.21 45.56 0.33 4.96 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 44 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.04 0.90 7.93 -51.93 -0.41 0.48 16 46 H 0.06 1.63 7.58 -51.93 -0.39 1.24 16 47 H 0.14 1.73 7.63 -52.48 -0.40 1.33 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -36.33 382.92 -9.21 -45.54 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.85 Total: 5.48 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -2.28 Total: 5.72 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -1.23 Total: -57.74 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.60 Total: -22.09 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.33 -9.21 -45.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484279232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.120 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds