Wall clock time and date at job start Wed Apr 1 2020 04:09:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46896 * 1
3 3 C 1.46745 * 111.00268 * 2 1
4 4 C 1.53419 * 108.59020 * 285.43100 * 3 2 1
5 5 O 1.43104 * 107.91598 * 296.67783 * 4 3 2
6 6 C 1.36013 * 116.70806 * 45.48095 * 5 4 3
7 7 C 1.39082 * 118.58514 * 165.05016 * 6 5 4
8 8 C 1.37702 * 120.40838 * 179.38934 * 7 6 5
9 9 C 1.39697 * 119.88376 * 0.60640 * 8 7 6
10 10 C 1.47612 * 120.09735 * 179.79951 * 9 8 7
11 11 O 1.21586 * 120.00042 * 179.72665 * 10 9 8
12 12 N 1.34781 * 120.00217 * 359.71825 * 10 9 8
13 13 C 1.46497 * 120.00378 * 180.02562 * 12 10 9
14 14 C 1.52995 * 109.47453 * 180.02562 * 13 12 10
15 15 O 1.42901 * 113.28192 * 313.06542 * 14 13 12
16 16 C 1.53495 * 114.20885 * 179.97438 * 14 13 12
17 17 N 1.47063 * 87.98752 * 220.34588 * 16 14 13
18 18 C 1.36935 * 136.06032 * 207.08713 * 17 16 14
19 19 H 1.08002 * 119.99824 * 6.49422 * 18 17 16
20 20 C 1.38813 * 120.00278 * 186.49512 * 18 17 16
21 21 N 1.31620 * 119.99721 * 6.70578 * 20 18 17
22 22 Si 1.86796 * 120.00005 * 186.43238 * 20 18 17
23 23 H 1.48499 * 109.47369 * 84.98721 * 22 20 18
24 24 H 1.48500 * 109.47154 * 204.98480 * 22 20 18
25 25 H 1.48501 * 109.47145 * 324.99099 * 22 20 18
26 26 C 1.47068 * 87.88544 * 27.33896 * 17 16 14
27 27 C 1.39554 * 119.80364 * 359.51636 * 9 8 7
28 28 C 1.38733 * 120.12755 * 0.22595 * 27 9 8
29 29 H 1.09000 * 109.47117 * 185.40812 * 1 2 3
30 30 H 1.09001 * 109.46670 * 305.40703 * 1 2 3
31 31 H 1.08997 * 109.47095 * 65.40823 * 1 2 3
32 32 H 1.09000 * 109.61857 * 45.16340 * 3 2 1
33 33 H 1.09006 * 109.62026 * 165.69739 * 3 2 1
34 34 H 1.09001 * 109.77051 * 56.28389 * 4 3 2
35 35 H 1.09006 * 109.76871 * 177.07244 * 4 3 2
36 36 H 1.07999 * 119.79994 * 359.70199 * 7 6 5
37 37 H 1.08008 * 120.06072 * 180.33439 * 8 7 6
38 38 H 0.96998 * 119.99596 * 0.02562 * 12 10 9
39 39 H 1.09005 * 109.47237 * 59.99346 * 13 12 10
40 40 H 1.09005 * 109.46802 * 300.00431 * 13 12 10
41 41 H 0.96705 * 113.99953 * 46.93200 * 15 14 13
42 42 H 1.08999 * 113.47047 * 105.56358 * 16 14 13
43 43 H 1.09007 * 113.51565 * 335.13333 * 16 14 13
44 44 H 0.97002 * 119.99507 * 179.72842 * 21 20 18
45 45 H 1.09006 * 113.46436 * 87.43772 * 26 17 16
46 46 H 1.08994 * 113.47260 * 217.88053 * 26 17 16
47 47 H 1.08005 * 119.93165 * 180.19830 * 27 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9949 1.3700 0.0000
4 6 1.8090 1.9652 -1.4017
5 8 2.5945 1.1933 -2.3155
6 6 2.5154 -0.1594 -2.1981
7 6 2.9958 -0.9469 -3.2390
8 6 2.9458 -2.3204 -3.1542
9 6 2.3981 -2.9284 -2.0221
10 6 2.3381 -4.4003 -1.9282
11 8 1.8656 -4.9277 -0.9398
12 7 2.8071 -5.1597 -2.9381
13 6 2.7471 -6.6205 -2.8452
14 6 3.3404 -7.2371 -4.1135
15 8 2.8545 -6.6349 -5.3149
16 6 3.3323 -8.7719 -4.1304
17 7 4.6716 -8.7207 -4.7356
18 6 5.4139 -9.5265 -5.5572
19 1 4.9695 -10.4090 -5.9931
20 6 6.7375 -9.2090 -5.8296
21 7 7.3184 -8.2113 -5.1975
22 14 7.6963 -10.2025 -7.0878
23 1 7.4358 -9.6636 -8.4468
24 1 9.1480 -10.1106 -6.7889
25 1 7.2674 -11.6229 -7.0280
26 6 4.8655 -7.4262 -4.0651
27 6 1.9132 -2.1402 -0.9775
28 6 1.9703 -0.7568 -1.0646
29 1 -0.3633 -1.0231 0.0969
30 1 -0.3633 0.5954 0.8376
31 1 -0.3633 0.4277 -0.9344
32 1 1.4502 1.9711 0.7281
33 1 3.0549 1.3551 0.2537
34 1 0.7580 1.9166 -1.6865
35 1 2.1463 3.0018 -1.4098
36 1 3.4153 -0.4784 -4.1170
37 1 3.3255 -2.9266 -3.9636
38 1 3.1843 -4.7390 -3.7265
39 1 1.7090 -6.9355 -2.7389
40 1 3.3182 -6.9532 -1.9784
41 1 2.8613 -5.6680 -5.3008
42 1 2.5740 -9.1948 -4.7895
43 1 3.3221 -9.2178 -3.1358
44 1 8.2445 -7.9920 -5.3851
45 1 5.2597 -7.5165 -3.0528
46 1 5.4135 -6.7026 -4.6684
47 1 1.4922 -2.6081 -0.0998
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484279232.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:09:54
Heat of formation + Delta-G solvation = -7.416564 kcal
Electronic energy + Delta-G solvation = -30185.860884 eV
Core-core repulsion = 25950.859404 eV
Total energy + Delta-G solvation = -4235.001481 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-41.60552 -40.02569 -38.82348 -37.37057 -36.93673 -35.05777 -34.03210 -32.07527
-31.43934 -30.86055 -29.35174 -28.45588 -26.46883 -25.59211 -24.85679 -24.72688
-23.09167 -21.99800 -21.53043 -20.05919 -19.40440 -18.65980 -18.06911 -17.30566
-16.84705 -16.49906 -15.89372 -15.68697 -15.50980 -15.30530 -15.02280 -14.90906
-14.75115 -14.16107 -14.11065 -14.01026 -13.89518 -13.54017 -13.47458 -13.24402
-12.76508 -12.67050 -12.58151 -12.45042 -12.23810 -12.02731 -11.84462 -11.46760
-11.34925 -11.15248 -10.85618 -10.73318 -10.46424 -10.10399 -9.85650 -9.79628
-9.50042 -9.19853 -8.92368 -8.81031 -8.73135 -8.36762 -6.90976 -5.79371
-3.09682 0.61070 0.96742 2.65625 2.76770 3.01119 3.27497 3.40492
3.44726 3.46471 3.61579 3.97905 4.34024 4.39641 4.42768 4.43600
4.46682 4.61766 4.72307 4.82801 4.86481 4.89423 4.95101 5.01533
5.11927 5.19855 5.25073 5.31966 5.37002 5.53060 5.59061 5.74006
5.76462 5.81059 5.99832 6.02788 6.12831 6.29590 6.34506 6.40918
6.52480 6.54531 6.55349 6.97745 7.01047 7.07915 7.44983 7.46800
7.93958 8.07170 8.21154 9.02026 9.68631 10.60387 11.39542
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.021057 B = 0.002081 C = 0.001964
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1329.417874 B =13454.083672 C =14250.553343
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 N -0.489 5.489
3 C 0.015 3.985
4 C 0.019 3.981
5 O -0.306 6.306
6 C 0.111 3.889
7 C -0.138 4.138
8 C -0.060 4.060
9 C -0.150 4.150
10 C 0.563 3.437
11 O -0.539 6.539
12 N -0.719 5.719
13 C 0.108 3.892
14 C 0.055 3.945
15 O -0.521 6.521
16 C 0.134 3.866
17 N -0.599 5.599
18 C -0.214 4.214
19 H 0.082 0.918
20 C -0.008 4.008
21 N -0.921 5.921
22 Si 0.915 3.085
23 H -0.287 1.287
24 H -0.291 1.291
25 H -0.281 1.281
26 C 0.144 3.856
27 C -0.021 4.021
28 C 0.014 3.986
29 H 0.080 0.920
30 H 0.078 0.922
31 H 0.033 0.967
32 H 0.101 0.899
33 H 0.096 0.904
34 H 0.068 0.932
35 H 0.116 0.884
36 H 0.140 0.860
37 H 0.137 0.863
38 H 0.396 0.604
39 H 0.073 0.927
40 H 0.082 0.918
41 H 0.359 0.641
42 H 0.052 0.948
43 H 0.050 0.950
44 H 0.254 0.746
45 H 0.039 0.961
46 H 0.065 0.935
47 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.972 23.207 9.125 28.584
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.206 5.206
3 C -0.113 4.113
4 C -0.058 4.058
5 O -0.219 6.219
6 C 0.063 3.937
7 C -0.157 4.157
8 C -0.080 4.080
9 C -0.154 4.154
10 C 0.351 3.649
11 O -0.417 6.417
12 N -0.373 5.373
13 C -0.016 4.016
14 C 0.012 3.988
15 O -0.324 6.324
16 C 0.007 3.993
17 N -0.324 5.324
18 C -0.341 4.341
19 H 0.100 0.900
20 C -0.205 4.205
21 N -0.568 5.568
22 Si 0.745 3.255
23 H -0.214 1.214
24 H -0.217 1.217
25 H -0.207 1.207
26 C 0.017 3.983
27 C -0.042 4.042
28 C -0.082 4.082
29 H 0.099 0.901
30 H 0.097 0.903
31 H 0.052 0.948
32 H 0.119 0.881
33 H 0.114 0.886
34 H 0.086 0.914
35 H 0.134 0.866
36 H 0.157 0.843
37 H 0.155 0.845
38 H 0.232 0.768
39 H 0.092 0.908
40 H 0.101 0.899
41 H 0.205 0.795
42 H 0.070 0.930
43 H 0.067 0.933
44 H 0.064 0.936
45 H 0.056 0.944
46 H 0.083 0.917
47 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -13.831 21.942 9.794 27.725
hybrid contribution 0.644 0.734 -1.230 1.570
sum -13.187 22.676 8.564 27.595
Atomic orbital electron populations
1.22631 0.84864 1.03860 1.01034 1.59187 1.08749 1.12569 1.40102
1.23004 1.03205 0.88370 0.96706 1.23612 0.95809 0.96144 0.90196
1.86295 1.64606 1.14463 1.56500 1.19286 0.98739 0.83064 0.92614
1.20387 1.04428 0.92627 0.98212 1.21131 0.95998 0.93958 0.96885
1.19727 1.05946 0.93139 0.96610 1.18042 0.77829 0.86291 0.82779
1.90779 1.45649 1.74369 1.30928 1.45839 1.62941 1.07570 1.20908
1.21966 1.02079 0.78266 0.99322 1.23501 0.97299 0.95739 0.82257
1.86650 1.86692 1.22469 1.36634 1.22379 0.90364 0.89574 0.97001
1.45364 1.13208 1.21080 1.52787 1.18899 0.92023 1.04750 1.18472
0.89989 1.24816 0.96228 0.99123 1.00312 1.69837 1.12291 1.31079
1.43580 0.86097 0.79029 0.79314 0.81055 1.21431 1.21669 1.20652
1.22690 0.89714 0.89631 0.96229 1.20882 0.95153 0.90403 0.97754
1.18581 1.06509 0.93326 0.89810 0.90127 0.90322 0.94798 0.88058
0.88555 0.91372 0.86597 0.84258 0.84535 0.76755 0.90828 0.89946
0.79510 0.93016 0.93286 0.93622 0.94374 0.91683 0.83817
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.14 9.19 60.06 0.55 0.69 16
2 N -0.49 -4.12 4.86 -178.70 -0.87 -4.99 16
3 C 0.01 0.09 6.02 -3.69 -0.02 0.07 16
4 C 0.02 0.11 7.06 37.37 0.26 0.38 16
5 O -0.31 -2.86 10.39 -19.78 -0.21 -3.07 16
6 C 0.11 1.14 6.48 -38.90 -0.25 0.89 16
7 C -0.14 -1.32 9.91 -39.46 -0.39 -1.71 16
8 C -0.06 -0.59 9.53 -39.23 -0.37 -0.96 16
9 C -0.15 -1.77 5.87 -105.04 -0.62 -2.39 16
10 C 0.56 7.94 7.77 -12.43 -0.10 7.84 16
11 O -0.54 -9.36 16.33 5.29 0.09 -9.27 16
12 N -0.72 -9.36 5.29 -61.32 -0.32 -9.68 16
13 C 0.11 1.64 5.42 -4.05 -0.02 1.62 16
14 C 0.05 1.00 1.74 -89.97 -0.16 0.84 16
15 O -0.52 -9.27 13.56 -35.23 -0.48 -9.75 16
16 C 0.13 2.77 8.10 -8.51 -0.07 2.71 16
17 N -0.60 -15.57 3.76 -184.58 -0.69 -16.27 16
18 C -0.21 -6.11 10.73 -15.06 -0.16 -6.27 16
19 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16
20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16
21 N -0.92 -27.46 11.81 55.49 0.66 -26.80 16
22 Si 0.91 22.36 29.56 -169.99 -5.02 17.33 16
23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16
25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
26 C 0.14 3.29 6.66 -8.37 -0.06 3.23 16
27 C -0.02 -0.25 9.00 -38.91 -0.35 -0.60 16
28 C 0.01 0.14 5.12 -83.61 -0.43 -0.29 16
29 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16
30 H 0.08 0.34 7.98 -51.93 -0.41 -0.07 16
31 H 0.03 0.20 6.89 -51.93 -0.36 -0.15 16
32 H 0.10 0.35 7.90 -51.93 -0.41 -0.06 16
33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
34 H 0.07 0.36 6.80 -51.93 -0.35 0.01 16
35 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16
36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16
37 H 0.14 1.02 6.40 -52.48 -0.34 0.69 16
38 H 0.40 4.25 4.97 -40.82 -0.20 4.05 16
39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
40 H 0.08 1.32 7.89 -51.93 -0.41 0.91 16
41 H 0.36 4.63 7.21 45.56 0.33 4.96 16
42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16
43 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16
44 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16
45 H 0.04 0.90 7.93 -51.93 -0.41 0.48 16
46 H 0.06 1.63 7.58 -51.93 -0.39 1.24 16
47 H 0.14 1.73 7.63 -52.48 -0.40 1.33 16
LS Contribution 382.92 15.07 5.77 5.77
Total: -1.00 -36.33 382.92 -9.21 -45.54
By element:
Atomic # 1 Polarization: 11.33 SS G_CDS: -5.85 Total: 5.48 kcal
Atomic # 6 Polarization: 7.99 SS G_CDS: -2.28 Total: 5.72 kcal
Atomic # 7 Polarization: -56.51 SS G_CDS: -1.23 Total: -57.74 kcal
Atomic # 8 Polarization: -21.49 SS G_CDS: -0.60 Total: -22.09 kcal
Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -36.33 -9.21 -45.54 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484279232.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.120 kcal
(2) G-P(sol) polarization free energy of solvation -36.328 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.792 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.536 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.417 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds