Wall clock time and date at job start Wed Apr 1 2020 04:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46745 * 111.00268 * 2 1 4 4 C 1.53419 * 108.59020 * 285.43100 * 3 2 1 5 5 O 1.43104 * 107.91598 * 296.67783 * 4 3 2 6 6 C 1.36013 * 116.70806 * 45.48095 * 5 4 3 7 7 C 1.39082 * 118.58514 * 165.05016 * 6 5 4 8 8 C 1.37702 * 120.40838 * 179.38934 * 7 6 5 9 9 C 1.39697 * 119.88376 * 0.60640 * 8 7 6 10 10 C 1.47612 * 120.09735 * 179.79951 * 9 8 7 11 11 O 1.21586 * 120.00042 * 179.72665 * 10 9 8 12 12 N 1.34781 * 120.00217 * 359.71825 * 10 9 8 13 13 C 1.46497 * 120.00378 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47453 * 180.02562 * 13 12 10 15 15 O 1.42901 * 113.28192 * 313.06542 * 14 13 12 16 16 C 1.53495 * 114.20885 * 179.97438 * 14 13 12 17 17 N 1.47063 * 87.98752 * 220.34588 * 16 14 13 18 18 C 1.36935 * 136.06032 * 207.08713 * 17 16 14 19 19 H 1.08002 * 119.99824 * 6.49422 * 18 17 16 20 20 C 1.38813 * 120.00278 * 186.49512 * 18 17 16 21 21 N 1.31620 * 119.99721 * 6.70578 * 20 18 17 22 22 Si 1.86796 * 120.00005 * 186.43238 * 20 18 17 23 23 H 1.48499 * 109.47369 * 84.98721 * 22 20 18 24 24 H 1.48500 * 109.47154 * 204.98480 * 22 20 18 25 25 H 1.48501 * 109.47145 * 324.99099 * 22 20 18 26 26 C 1.47068 * 87.88544 * 27.33896 * 17 16 14 27 27 C 1.39554 * 119.80364 * 359.51636 * 9 8 7 28 28 C 1.38733 * 120.12755 * 0.22595 * 27 9 8 29 29 H 1.09000 * 109.47117 * 185.40812 * 1 2 3 30 30 H 1.09001 * 109.46670 * 305.40703 * 1 2 3 31 31 H 1.08997 * 109.47095 * 65.40823 * 1 2 3 32 32 H 1.09000 * 109.61857 * 45.16340 * 3 2 1 33 33 H 1.09006 * 109.62026 * 165.69739 * 3 2 1 34 34 H 1.09001 * 109.77051 * 56.28389 * 4 3 2 35 35 H 1.09006 * 109.76871 * 177.07244 * 4 3 2 36 36 H 1.07999 * 119.79994 * 359.70199 * 7 6 5 37 37 H 1.08008 * 120.06072 * 180.33439 * 8 7 6 38 38 H 0.96998 * 119.99596 * 0.02562 * 12 10 9 39 39 H 1.09005 * 109.47237 * 59.99346 * 13 12 10 40 40 H 1.09005 * 109.46802 * 300.00431 * 13 12 10 41 41 H 0.96705 * 113.99953 * 46.93200 * 15 14 13 42 42 H 1.08999 * 113.47047 * 105.56358 * 16 14 13 43 43 H 1.09007 * 113.51565 * 335.13333 * 16 14 13 44 44 H 0.97002 * 119.99507 * 179.72842 * 21 20 18 45 45 H 1.09006 * 113.46436 * 87.43772 * 26 17 16 46 46 H 1.08994 * 113.47260 * 217.88053 * 26 17 16 47 47 H 1.08005 * 119.93165 * 180.19830 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3700 0.0000 4 6 1.8090 1.9652 -1.4017 5 8 2.5945 1.1933 -2.3155 6 6 2.5154 -0.1594 -2.1981 7 6 2.9958 -0.9469 -3.2390 8 6 2.9458 -2.3204 -3.1542 9 6 2.3981 -2.9284 -2.0221 10 6 2.3381 -4.4003 -1.9282 11 8 1.8656 -4.9277 -0.9398 12 7 2.8071 -5.1597 -2.9381 13 6 2.7471 -6.6205 -2.8452 14 6 3.3404 -7.2371 -4.1135 15 8 2.8545 -6.6349 -5.3149 16 6 3.3323 -8.7719 -4.1304 17 7 4.6716 -8.7207 -4.7356 18 6 5.4139 -9.5265 -5.5572 19 1 4.9695 -10.4090 -5.9931 20 6 6.7375 -9.2090 -5.8296 21 7 7.3184 -8.2113 -5.1975 22 14 7.6963 -10.2025 -7.0878 23 1 7.4358 -9.6636 -8.4468 24 1 9.1480 -10.1106 -6.7889 25 1 7.2674 -11.6229 -7.0280 26 6 4.8655 -7.4262 -4.0651 27 6 1.9132 -2.1402 -0.9775 28 6 1.9703 -0.7568 -1.0646 29 1 -0.3633 -1.0231 0.0969 30 1 -0.3633 0.5954 0.8376 31 1 -0.3633 0.4277 -0.9344 32 1 1.4502 1.9711 0.7281 33 1 3.0549 1.3551 0.2537 34 1 0.7580 1.9166 -1.6865 35 1 2.1463 3.0018 -1.4098 36 1 3.4153 -0.4784 -4.1170 37 1 3.3255 -2.9266 -3.9636 38 1 3.1843 -4.7390 -3.7265 39 1 1.7090 -6.9355 -2.7389 40 1 3.3182 -6.9532 -1.9784 41 1 2.8613 -5.6680 -5.3008 42 1 2.5740 -9.1948 -4.7895 43 1 3.3221 -9.2178 -3.1358 44 1 8.2445 -7.9920 -5.3851 45 1 5.2597 -7.5165 -3.0528 46 1 5.4135 -6.7026 -4.6684 47 1 1.4922 -2.6081 -0.0998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484279232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:53 Heat of formation + Delta-G solvation = -36.460416 kcal Electronic energy + Delta-G solvation = -30187.120320 eV Core-core repulsion = 25950.859404 eV Total energy + Delta-G solvation = -4236.260917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.28865 -41.25808 -40.25215 -38.20224 -37.57194 -36.62527 -35.31593 -34.08952 -32.21995 -31.62616 -30.39182 -29.63552 -27.89838 -26.58908 -26.38743 -25.52706 -24.22519 -23.36310 -22.48822 -21.15667 -20.82032 -19.52015 -18.96156 -18.64759 -18.03287 -17.51882 -17.15984 -16.92620 -16.51795 -16.38394 -16.17669 -15.80195 -15.65054 -15.58997 -15.41832 -14.99522 -14.82624 -14.72540 -14.65747 -14.37783 -14.23590 -13.89793 -13.53623 -13.23767 -13.11252 -13.09921 -13.04391 -12.79041 -12.62915 -12.52517 -12.24992 -12.12540 -11.96217 -11.79742 -11.41067 -11.08530 -10.92011 -10.69025 -10.51451 -10.21424 -9.49984 -9.06164 -8.95583 -7.94160 -5.25480 -0.23490 0.19727 1.45435 1.48471 1.56034 1.72020 1.97645 2.15905 2.46329 2.59350 2.74639 3.03413 3.29375 3.33215 3.41635 3.53229 3.69402 3.78073 3.87996 3.94415 3.96922 4.10505 4.16254 4.27693 4.36363 4.38825 4.45157 4.62005 4.69290 4.74271 4.75902 4.78449 4.83975 4.90432 4.93670 5.02377 5.05805 5.14480 5.20419 5.22753 5.28190 5.41422 5.45744 5.77787 5.88510 5.90969 6.29376 6.39341 6.80977 6.88869 7.11299 7.56969 8.56518 9.24607 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.002081 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.417874 B =13454.083672 C =14250.553343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.505 5.505 3 C 0.014 3.986 4 C 0.015 3.985 5 O -0.318 6.318 6 C 0.107 3.893 7 C -0.141 4.141 8 C -0.056 4.056 9 C -0.165 4.165 10 C 0.565 3.435 11 O -0.577 6.577 12 N -0.711 5.711 13 C 0.122 3.878 14 C 0.094 3.906 15 O -0.534 6.534 16 C 0.127 3.873 17 N -0.634 5.634 18 C -0.229 4.229 19 H 0.084 0.916 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.982 3.018 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.142 3.858 27 C -0.033 4.033 28 C 0.012 3.988 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.037 0.963 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.408 0.592 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.382 0.618 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.249 0.751 45 H 0.028 0.972 46 H 0.037 0.963 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.994 24.871 8.690 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.222 5.222 3 C -0.113 4.113 4 C -0.061 4.061 5 O -0.231 6.231 6 C 0.058 3.942 7 C -0.159 4.159 8 C -0.075 4.075 9 C -0.168 4.168 10 C 0.355 3.645 11 O -0.458 6.458 12 N -0.364 5.364 13 C -0.003 4.003 14 C 0.051 3.949 15 O -0.340 6.340 16 C 0.001 3.999 17 N -0.360 5.360 18 C -0.357 4.357 19 H 0.102 0.898 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.810 3.190 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.194 1.194 26 C 0.016 3.984 27 C -0.054 4.054 28 C -0.084 4.084 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.056 0.944 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.161 0.839 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.247 0.753 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.231 0.769 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.046 0.954 46 H 0.055 0.945 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.890 23.642 9.352 29.463 hybrid contribution 0.892 0.336 -1.040 1.411 sum -13.998 23.978 8.311 28.982 Atomic orbital electron populations 1.22667 0.83675 1.03695 1.02215 1.59185 1.09845 1.13849 1.39329 1.23118 1.03033 0.87461 0.97701 1.23909 0.96031 0.96889 0.89276 1.86280 1.65253 1.13988 1.57566 1.19469 0.98307 0.83797 0.92588 1.20653 1.03999 0.92550 0.98734 1.21314 0.95213 0.94380 0.96580 1.19579 1.07770 0.91626 0.97872 1.18356 0.76873 0.87221 0.82084 1.90756 1.47462 1.75194 1.32363 1.45687 1.62780 1.06637 1.21339 1.21677 1.02211 0.79368 0.97030 1.22872 0.93676 0.94678 0.83658 1.86600 1.86141 1.24738 1.36555 1.22607 0.88038 0.91669 0.97546 1.45732 1.14996 1.22016 1.53250 1.19282 0.92629 1.04991 1.18760 0.89835 1.25668 0.97291 1.00549 1.02503 1.70009 1.12188 1.32749 1.45173 0.85049 0.77126 0.78408 0.78454 1.21076 1.21964 1.19371 1.22690 0.92865 0.88161 0.94715 1.20850 0.95868 0.91198 0.97498 1.18653 1.06292 0.93024 0.90435 0.91310 0.88022 0.94394 0.85169 0.89520 0.90627 0.83880 0.82470 0.82434 0.75331 0.89652 0.90617 0.76884 0.92566 0.91342 0.94186 0.95423 0.94484 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.19 127.69 1.17 1.43 16 2 N -0.50 -7.93 4.86 -719.27 -3.49 -11.43 16 3 C 0.01 0.14 6.02 86.47 0.52 0.66 16 4 C 0.01 0.14 7.06 72.12 0.51 0.64 16 5 O -0.32 -5.35 10.39 -93.70 -0.97 -6.33 16 6 C 0.11 2.06 6.48 22.71 0.15 2.21 16 7 C -0.14 -2.46 9.91 22.35 0.22 -2.24 16 8 C -0.06 -1.01 9.53 22.50 0.21 -0.80 16 9 C -0.16 -3.83 5.87 -20.13 -0.12 -3.95 16 10 C 0.57 15.78 7.77 86.72 0.67 16.45 16 11 O -0.58 -20.25 16.33 -3.99 -0.07 -20.31 16 12 N -0.71 -17.73 5.29 -466.19 -2.47 -20.20 16 13 C 0.12 3.56 5.42 86.38 0.47 4.03 16 14 C 0.09 3.33 1.74 -10.37 -0.02 3.31 16 15 O -0.53 -18.13 13.56 -148.98 -2.02 -20.15 16 16 C 0.13 5.18 8.10 83.18 0.67 5.85 16 17 N -0.63 -33.19 3.76 -738.37 -2.78 -35.97 16 18 C -0.23 -13.14 10.73 84.03 0.90 -12.24 16 19 H 0.08 4.61 7.84 -2.91 -0.02 4.58 16 20 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 21 N -0.95 -57.96 11.81 21.65 0.26 -57.71 16 22 Si 0.98 46.33 29.56 68.60 2.03 48.35 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 C 0.14 6.58 6.66 83.27 0.55 7.14 16 27 C -0.03 -0.78 9.00 22.71 0.20 -0.58 16 28 C 0.01 0.25 5.12 38.21 0.20 0.45 16 29 H 0.07 0.94 7.85 -2.39 -0.02 0.92 16 30 H 0.10 0.66 7.98 -2.39 -0.02 0.64 16 31 H 0.04 0.40 6.89 -2.39 -0.02 0.38 16 32 H 0.13 0.50 7.90 -2.39 -0.02 0.48 16 33 H 0.09 1.03 8.14 -2.38 -0.02 1.02 16 34 H 0.08 0.60 6.80 -2.39 -0.02 0.59 16 35 H 0.14 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.16 2.04 6.40 -2.91 -0.02 2.02 16 38 H 0.41 8.10 4.97 -92.71 -0.46 7.64 16 39 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.08 2.37 7.89 -2.38 -0.02 2.35 16 41 H 0.38 9.01 7.21 -74.05 -0.53 8.48 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.07 2.55 8.11 -2.38 -0.02 2.53 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.03 1.34 7.93 -2.38 -0.02 1.32 16 46 H 0.04 1.90 7.58 -2.39 -0.02 1.88 16 47 H 0.13 3.31 7.63 -2.91 -0.02 3.29 16 Total: -1.00 -79.74 382.92 -2.70 -82.43 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.03 Total: 22.35 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 6.79 Total: 18.95 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -8.48 Total: -125.30 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -3.06 Total: -46.79 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -79.74 -2.70 -82.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484279232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.973 kcal (2) G-P(sol) polarization free energy of solvation -79.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds