Wall clock time and date at job start Wed Apr 1 2020 04:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99583 * 2 1 4 4 O 1.21544 * 120.00479 * 359.97438 * 3 2 1 5 5 C 1.47864 * 119.99632 * 179.97438 * 3 2 1 6 6 C 1.39709 * 120.06910 * 359.97438 * 5 3 2 7 7 C 1.38061 * 120.13680 * 180.02562 * 6 5 3 8 8 C 1.38100 * 120.30299 * 0.02562 * 7 6 5 9 9 C 1.39666 * 120.14069 * 359.97438 * 8 7 6 10 10 C 1.47856 * 120.06963 * 180.02562 * 9 8 7 11 11 O 1.21553 * 120.00190 * 321.88009 * 10 9 8 12 12 N 1.34783 * 120.00046 * 141.88444 * 10 9 8 13 13 C 1.47147 * 120.97867 * 354.20087 * 12 10 9 14 14 C 1.53302 * 108.38603 * 230.51315 * 13 12 10 15 15 O 1.42965 * 109.22029 * 307.70151 * 14 13 12 16 16 C 1.42962 * 114.16997 * 62.57696 * 15 14 13 17 17 H 1.08996 * 109.55021 * 57.36571 * 16 15 14 18 18 C 1.53000 * 109.51423 * 177.49634 * 16 15 14 19 19 N 1.46495 * 109.46889 * 299.74641 * 18 16 15 20 20 C 1.36938 * 119.99696 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00102 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00024 * 180.02562 * 20 19 18 23 23 N 1.31612 * 120.00253 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99888 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47447 * 89.99892 * 24 22 20 26 26 H 1.48509 * 109.47236 * 209.99992 * 24 22 20 27 27 H 1.48498 * 109.47250 * 329.99897 * 24 22 20 28 28 C 1.47147 * 120.98304 * 174.17941 * 12 10 9 29 29 C 1.39291 * 120.07290 * 180.27662 * 5 3 2 30 30 H 1.09003 * 109.47053 * 300.00337 * 1 2 3 31 31 H 1.09010 * 109.47036 * 60.00319 * 1 2 3 32 32 H 1.09002 * 109.46900 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99802 * 179.97438 * 2 1 3 34 34 H 1.07996 * 119.93396 * 0.03119 * 6 5 3 35 35 H 1.08006 * 119.84322 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.92585 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.68918 * 350.23465 * 13 12 10 38 38 H 1.08999 * 109.68380 * 110.75368 * 13 12 10 39 39 H 1.08998 * 109.50845 * 67.62247 * 14 13 12 40 40 H 1.08999 * 109.51450 * 187.77634 * 14 13 12 41 41 H 1.08999 * 109.47074 * 179.74529 * 18 16 15 42 42 H 1.08999 * 109.47011 * 59.74827 * 18 16 15 43 43 H 0.97005 * 120.00390 * 0.02562 * 19 18 16 44 44 H 0.97004 * 120.00285 * 179.97438 * 23 22 20 45 45 H 1.08998 * 109.68232 * 9.76243 * 28 12 10 46 46 H 1.09005 * 109.68075 * 249.20747 * 28 12 10 47 47 H 1.08001 * 120.14839 * 359.97438 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1673 0.0006 6 6 4.3175 -0.0418 0.0017 7 6 5.6981 -0.0434 0.0027 8 6 6.3963 1.1481 0.0033 9 6 5.7088 2.3638 0.0022 10 6 6.4579 3.6385 0.0022 11 8 7.4794 3.7433 0.6528 12 7 6.0082 4.6845 -0.7191 13 6 4.8473 4.5453 -1.6124 14 6 5.2272 5.1018 -2.9894 15 8 5.7545 6.4216 -2.8345 16 6 6.9548 6.4853 -2.0605 17 1 7.7151 5.8491 -2.5136 18 6 7.4576 7.9296 -2.0151 19 7 7.7359 8.3928 -3.3768 20 6 8.1992 9.6643 -3.5861 21 1 8.3598 10.3254 -2.7475 22 6 8.4624 10.1034 -4.8764 23 7 8.9082 11.3253 -5.0776 24 14 8.1840 8.9600 -6.3271 25 1 6.7932 9.1191 -6.8230 26 1 9.1385 9.2974 -7.4137 27 1 8.3988 7.5547 -5.8982 28 6 6.6633 5.9995 -0.6361 29 6 4.3155 2.3727 0.0064 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.7776 -0.9771 0.0016 35 1 6.2345 -0.9809 0.0040 36 1 7.4763 1.1397 0.0045 37 1 4.5781 3.4929 -1.7035 38 1 4.0042 5.1062 -1.2091 39 1 5.9806 4.4601 -3.4462 40 1 4.3426 5.1355 -3.6253 41 1 8.3703 7.9781 -1.4212 42 1 6.6961 8.5654 -1.5635 43 1 7.5913 7.7990 -4.1302 44 1 9.0925 11.6320 -5.9792 45 1 7.5967 5.9102 -0.0804 46 1 6.0033 6.7075 -0.1347 47 1 3.7791 3.3101 0.0101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484699406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:48 Heat of formation + Delta-G solvation = -50.842337 kcal Electronic energy + Delta-G solvation = -30238.305928 eV Core-core repulsion = 26001.421364 eV Total energy + Delta-G solvation = -4236.884564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.17784 -40.24443 -38.90174 -37.99712 -35.37067 -35.18389 -34.56006 -32.54349 -31.98331 -31.63266 -30.46205 -28.38482 -27.51145 -26.15828 -24.22024 -23.93759 -23.21825 -22.15876 -21.26488 -20.91345 -19.97326 -18.42404 -17.67606 -17.30683 -16.79350 -16.61774 -16.53746 -16.12174 -15.79862 -15.64606 -15.21593 -14.94830 -14.83714 -14.38702 -14.30062 -14.21847 -14.01515 -13.73069 -13.37702 -13.18266 -12.89193 -12.87330 -12.76349 -12.53635 -12.40553 -12.23494 -11.92193 -11.81909 -11.20182 -11.07231 -10.81886 -10.64272 -10.50698 -10.19180 -10.06916 -10.00306 -9.79513 -9.54417 -9.52999 -9.49898 -8.86048 -8.67393 -7.17904 -5.71536 -3.06503 0.16097 0.50584 2.11603 2.51725 2.55661 2.70148 3.29963 3.43176 3.47698 3.49980 3.81589 3.94015 4.05709 4.24854 4.36305 4.58453 4.59836 4.65411 4.66459 4.77786 4.82217 4.93608 4.98191 5.00527 5.07922 5.18567 5.24655 5.28946 5.37477 5.54598 5.56616 5.57908 5.60247 5.67955 5.70601 5.76728 5.77669 5.80657 5.95295 6.12320 6.20219 6.47977 6.61596 6.85571 7.06003 7.31608 7.63288 7.81824 8.03976 8.47174 9.26692 9.99029 10.19465 11.46757 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002287 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.307498 B =12240.733247 C =12968.271883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.559 3.441 4 O -0.529 6.529 5 C -0.145 4.145 6 C -0.067 4.067 7 C -0.130 4.130 8 C -0.038 4.038 9 C -0.133 4.133 10 C 0.561 3.439 11 O -0.529 6.529 12 N -0.606 5.606 13 C 0.063 3.937 14 C 0.045 3.955 15 O -0.360 6.360 16 C 0.069 3.931 17 H 0.064 0.936 18 C 0.168 3.832 19 N -0.750 5.750 20 C -0.242 4.242 21 H 0.091 0.909 22 C 0.004 3.996 23 N -0.935 5.935 24 Si 0.887 3.113 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.278 1.278 28 C 0.086 3.914 29 C -0.031 4.031 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.401 0.599 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.107 0.893 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.365 0.635 44 H 0.259 0.741 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.989 -32.073 11.607 37.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.384 5.384 3 C 0.346 3.654 4 O -0.406 6.406 5 C -0.148 4.148 6 C -0.085 4.085 7 C -0.148 4.148 8 C -0.057 4.057 9 C -0.136 4.136 10 C 0.349 3.651 11 O -0.407 6.407 12 N -0.339 5.339 13 C -0.060 4.060 14 C -0.033 4.033 15 O -0.278 6.278 16 C 0.010 3.990 17 H 0.082 0.918 18 C 0.040 3.960 19 N -0.396 5.396 20 C -0.372 4.372 21 H 0.109 0.891 22 C -0.192 4.192 23 N -0.583 5.583 24 Si 0.718 3.282 25 H -0.210 1.210 26 H -0.219 1.219 27 H -0.205 1.205 28 C -0.037 4.037 29 C -0.051 4.051 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.236 0.764 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.125 0.875 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.198 0.802 44 H 0.069 0.931 45 H 0.124 0.876 46 H 0.102 0.898 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.926 -30.835 11.925 36.274 hybrid contribution 0.016 -1.497 -1.040 1.823 sum -14.910 -32.332 10.884 37.231 Atomic orbital electron populations 1.21596 0.78832 1.02502 1.02775 1.45688 1.08104 1.08486 1.76153 1.18234 0.87022 0.83905 0.76260 1.90818 1.69769 1.31025 1.48970 1.19811 0.92900 0.94190 1.07897 1.21457 0.94731 0.96849 0.95502 1.21105 0.93794 0.98467 1.01390 1.21483 1.01099 0.90686 0.92460 1.19911 0.93445 0.94132 1.06078 1.18234 0.84300 0.83058 0.79467 1.90808 1.23916 1.82924 1.43003 1.48051 1.31722 1.10699 1.43442 1.22872 0.88627 1.03005 0.91491 1.22954 0.99763 0.85623 0.94930 1.88150 1.41269 1.25884 1.72454 1.22866 0.86812 0.99767 0.89507 0.91847 1.20609 0.97500 0.88751 0.89127 1.42545 1.80839 1.14240 1.01931 1.19053 1.35642 0.88320 0.94202 0.89144 1.24655 1.01292 0.96255 0.97001 1.69704 1.51430 1.16382 1.20752 0.86496 0.77718 0.80632 0.83370 1.21007 1.21872 1.20472 1.22395 1.00093 0.82561 0.98633 1.21605 0.92526 0.98662 0.92273 0.91898 0.91833 0.90402 0.76386 0.85176 0.84350 0.84256 0.88556 0.89676 0.92845 0.87534 0.93742 0.94402 0.80226 0.93106 0.87627 0.89824 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 10.70 59.85 0.64 1.00 16 2 N -0.73 -3.64 5.66 -68.03 -0.39 -4.02 16 3 C 0.56 4.80 7.77 -12.32 -0.10 4.70 16 4 O -0.53 -6.62 16.34 5.33 0.09 -6.54 16 5 C -0.14 -1.11 5.87 -105.02 -0.62 -1.72 16 6 C -0.07 -0.32 9.54 -39.10 -0.37 -0.70 16 7 C -0.13 -0.69 10.02 -39.70 -0.40 -1.08 16 8 C -0.04 -0.31 9.62 -39.10 -0.38 -0.68 16 9 C -0.13 -1.34 5.18 -105.02 -0.54 -1.88 16 10 C 0.56 7.36 7.35 -12.32 -0.09 7.27 16 11 O -0.53 -8.58 16.36 5.32 0.09 -8.49 16 12 N -0.61 -7.67 3.02 -173.38 -0.52 -8.20 16 13 C 0.06 0.67 4.99 -3.53 -0.02 0.65 16 14 C 0.05 0.55 6.99 37.31 0.26 0.81 16 15 O -0.36 -6.00 10.14 -35.23 -0.36 -6.36 16 16 C 0.07 1.14 2.86 -26.58 -0.08 1.06 16 17 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 18 C 0.17 3.34 5.95 -4.04 -0.02 3.32 16 19 N -0.75 -18.65 5.30 -59.91 -0.32 -18.96 16 20 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 21 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 22 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 23 N -0.93 -29.98 13.97 55.49 0.78 -29.21 16 24 Si 0.89 22.94 27.74 -169.99 -4.71 18.22 16 25 H -0.28 -7.30 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 28 C 0.09 1.20 5.94 -3.54 -0.02 1.17 16 29 C -0.03 -0.29 6.95 -38.78 -0.27 -0.56 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 33 H 0.40 0.72 6.85 -40.82 -0.28 0.44 16 34 H 0.13 0.17 6.39 -52.49 -0.34 -0.16 16 35 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 36 H 0.14 1.08 8.04 -52.49 -0.42 0.66 16 37 H 0.10 0.86 4.91 -51.93 -0.25 0.61 16 38 H 0.09 0.87 8.01 -51.93 -0.42 0.46 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.36 9.02 5.41 -40.82 -0.22 8.80 16 44 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 45 H 0.11 1.52 7.06 -51.93 -0.37 1.15 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.15 1.46 5.93 -52.49 -0.31 1.15 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -38.52 385.27 -8.22 -46.74 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.43 Total: 4.89 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -2.25 Total: 6.13 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.45 Total: -60.39 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.18 Total: -21.39 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.22 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.52 -8.22 -46.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484699406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.100 kcal (2) G-P(sol) polarization free energy of solvation -38.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds