Wall clock time and date at job start Wed Apr 1 2020 04:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99583 * 2 1 4 4 O 1.21544 * 120.00479 * 359.97438 * 3 2 1 5 5 C 1.47864 * 119.99632 * 179.97438 * 3 2 1 6 6 C 1.39709 * 120.06910 * 359.97438 * 5 3 2 7 7 C 1.38061 * 120.13680 * 180.02562 * 6 5 3 8 8 C 1.38100 * 120.30299 * 0.02562 * 7 6 5 9 9 C 1.39666 * 120.14069 * 359.97438 * 8 7 6 10 10 C 1.47856 * 120.06963 * 180.02562 * 9 8 7 11 11 O 1.21553 * 120.00190 * 321.88009 * 10 9 8 12 12 N 1.34783 * 120.00046 * 141.88444 * 10 9 8 13 13 C 1.47147 * 120.97867 * 354.20087 * 12 10 9 14 14 C 1.53302 * 108.38603 * 230.51315 * 13 12 10 15 15 O 1.42965 * 109.22029 * 307.70151 * 14 13 12 16 16 C 1.42962 * 114.16997 * 62.57696 * 15 14 13 17 17 H 1.08996 * 109.55021 * 57.36571 * 16 15 14 18 18 C 1.53000 * 109.51423 * 177.49634 * 16 15 14 19 19 N 1.46495 * 109.46889 * 299.74641 * 18 16 15 20 20 C 1.36938 * 119.99696 * 179.97438 * 19 18 16 21 21 H 1.07993 * 120.00102 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00024 * 180.02562 * 20 19 18 23 23 N 1.31612 * 120.00253 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99888 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47447 * 89.99892 * 24 22 20 26 26 H 1.48509 * 109.47236 * 209.99992 * 24 22 20 27 27 H 1.48498 * 109.47250 * 329.99897 * 24 22 20 28 28 C 1.47147 * 120.98304 * 174.17941 * 12 10 9 29 29 C 1.39291 * 120.07290 * 180.27662 * 5 3 2 30 30 H 1.09003 * 109.47053 * 300.00337 * 1 2 3 31 31 H 1.09010 * 109.47036 * 60.00319 * 1 2 3 32 32 H 1.09002 * 109.46900 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99802 * 179.97438 * 2 1 3 34 34 H 1.07996 * 119.93396 * 0.03119 * 6 5 3 35 35 H 1.08006 * 119.84322 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.92585 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.68918 * 350.23465 * 13 12 10 38 38 H 1.08999 * 109.68380 * 110.75368 * 13 12 10 39 39 H 1.08998 * 109.50845 * 67.62247 * 14 13 12 40 40 H 1.08999 * 109.51450 * 187.77634 * 14 13 12 41 41 H 1.08999 * 109.47074 * 179.74529 * 18 16 15 42 42 H 1.08999 * 109.47011 * 59.74827 * 18 16 15 43 43 H 0.97005 * 120.00390 * 0.02562 * 19 18 16 44 44 H 0.97004 * 120.00285 * 179.97438 * 23 22 20 45 45 H 1.08998 * 109.68232 * 9.76243 * 28 12 10 46 46 H 1.09005 * 109.68075 * 249.20747 * 28 12 10 47 47 H 1.08001 * 120.14839 * 359.97438 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1673 0.0006 6 6 4.3175 -0.0418 0.0017 7 6 5.6981 -0.0434 0.0027 8 6 6.3963 1.1481 0.0033 9 6 5.7088 2.3638 0.0022 10 6 6.4579 3.6385 0.0022 11 8 7.4794 3.7433 0.6528 12 7 6.0082 4.6845 -0.7191 13 6 4.8473 4.5453 -1.6124 14 6 5.2272 5.1018 -2.9894 15 8 5.7545 6.4216 -2.8345 16 6 6.9548 6.4853 -2.0605 17 1 7.7151 5.8491 -2.5136 18 6 7.4576 7.9296 -2.0151 19 7 7.7359 8.3928 -3.3768 20 6 8.1992 9.6643 -3.5861 21 1 8.3598 10.3254 -2.7475 22 6 8.4624 10.1034 -4.8764 23 7 8.9082 11.3253 -5.0776 24 14 8.1840 8.9600 -6.3271 25 1 6.7932 9.1191 -6.8230 26 1 9.1385 9.2974 -7.4137 27 1 8.3988 7.5547 -5.8982 28 6 6.6633 5.9995 -0.6361 29 6 4.3155 2.3727 0.0064 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.7776 -0.9771 0.0016 35 1 6.2345 -0.9809 0.0040 36 1 7.4763 1.1397 0.0045 37 1 4.5781 3.4929 -1.7035 38 1 4.0042 5.1062 -1.2091 39 1 5.9806 4.4601 -3.4462 40 1 4.3426 5.1355 -3.6253 41 1 8.3703 7.9781 -1.4212 42 1 6.6961 8.5654 -1.5635 43 1 7.5913 7.7990 -4.1302 44 1 9.0925 11.6320 -5.9792 45 1 7.5967 5.9102 -0.0804 46 1 6.0033 6.7075 -0.1347 47 1 3.7791 3.3101 0.0101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484699406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:47 Heat of formation + Delta-G solvation = -80.912547 kcal Electronic energy + Delta-G solvation = -30239.609870 eV Core-core repulsion = 26001.421364 eV Total energy + Delta-G solvation = -4238.188506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.00263 -41.02333 -39.86540 -38.84069 -36.88492 -35.97444 -35.75918 -34.10029 -32.90410 -32.49811 -31.85482 -29.56313 -27.97174 -27.57957 -25.11872 -24.91660 -24.22233 -23.47576 -22.48702 -21.84688 -20.73846 -19.79633 -19.14690 -18.20628 -17.78311 -17.36021 -17.29060 -17.04497 -16.72246 -16.56233 -16.29384 -16.19513 -16.00453 -15.60844 -15.33128 -15.01961 -14.84431 -14.76934 -14.53933 -14.45263 -14.14709 -14.08107 -13.76802 -13.53746 -13.19296 -13.07096 -12.92261 -12.88183 -12.70744 -12.55332 -12.34411 -12.07335 -11.87960 -11.75706 -11.35270 -11.23130 -11.04546 -11.00967 -10.36752 -10.12876 -10.01135 -9.74110 -9.32788 -8.03766 -5.37389 -0.40765 -0.09334 1.36259 1.38121 1.40793 1.47529 1.59732 1.85294 2.14343 2.47724 2.63299 2.71719 3.17169 3.27664 3.36722 3.57970 3.70071 3.79858 3.84032 3.91091 3.95840 4.02005 4.05788 4.17707 4.24089 4.26599 4.41201 4.42257 4.57422 4.59535 4.63670 4.65995 4.75355 4.77730 4.88536 4.97520 5.01615 5.04443 5.09553 5.18058 5.24881 5.34142 5.65575 5.72546 6.08405 6.11687 6.20116 6.45970 6.82377 7.05452 7.13524 7.80571 8.01003 9.17463 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002287 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.307498 B =12240.733247 C =12968.271883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.714 5.714 3 C 0.554 3.446 4 O -0.579 6.579 5 C -0.152 4.152 6 C -0.045 4.045 7 C -0.117 4.117 8 C -0.046 4.046 9 C -0.151 4.151 10 C 0.559 3.441 11 O -0.570 6.570 12 N -0.607 5.607 13 C 0.069 3.931 14 C 0.040 3.960 15 O -0.386 6.386 16 C 0.084 3.916 17 H 0.060 0.940 18 C 0.163 3.837 19 N -0.753 5.753 20 C -0.236 4.236 21 H 0.060 0.940 22 C -0.064 4.064 23 N -0.982 5.982 24 Si 0.959 3.041 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.257 1.257 28 C 0.092 3.908 29 C -0.041 4.041 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.116 0.884 33 H 0.420 0.580 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.129 0.871 41 H 0.050 0.950 42 H 0.035 0.965 43 H 0.367 0.633 44 H 0.259 0.741 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.495 -37.136 11.208 42.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.366 5.366 3 C 0.341 3.659 4 O -0.460 6.460 5 C -0.155 4.155 6 C -0.063 4.063 7 C -0.134 4.134 8 C -0.065 4.065 9 C -0.154 4.154 10 C 0.349 3.651 11 O -0.450 6.450 12 N -0.339 5.339 13 C -0.053 4.053 14 C -0.037 4.037 15 O -0.305 6.305 16 C 0.025 3.975 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.399 5.399 20 C -0.367 4.367 21 H 0.078 0.922 22 C -0.256 4.256 23 N -0.632 5.632 24 Si 0.786 3.214 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.182 1.182 28 C -0.031 4.031 29 C -0.060 4.060 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.258 0.742 34 H 0.192 0.808 35 H 0.193 0.807 36 H 0.155 0.845 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.147 0.853 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.201 0.799 44 H 0.068 0.932 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.465 -35.992 11.549 41.230 hybrid contribution 0.415 -0.008 -0.804 0.905 sum -16.051 -35.999 10.745 40.854 Atomic orbital electron populations 1.21736 0.78190 1.04620 1.01609 1.45607 1.08590 1.08248 1.74189 1.18458 0.87429 0.84145 0.75820 1.90797 1.70687 1.32935 1.51592 1.19843 0.92530 0.94706 1.08443 1.21916 0.94736 0.97348 0.92310 1.21499 0.93995 0.98650 0.99298 1.21660 1.01298 0.91030 0.92504 1.19680 0.93541 0.93228 1.09001 1.18779 0.83898 0.83926 0.78492 1.90773 1.25853 1.83713 1.44642 1.48114 1.31987 1.10106 1.43739 1.22936 0.87810 1.04256 0.90259 1.23236 1.00569 0.83780 0.96116 1.88092 1.41066 1.28706 1.72594 1.22533 0.86994 0.97024 0.90938 0.92212 1.20751 0.97776 0.91107 0.86736 1.42535 1.80596 1.12732 1.04005 1.19051 1.34623 0.89581 0.93413 0.92237 1.25506 1.01804 0.98050 1.00199 1.69880 1.53306 1.18630 1.21401 0.85353 0.77540 0.79385 0.79137 1.20462 1.21882 1.18152 1.22172 1.00240 0.83680 0.96973 1.21463 0.92114 0.99101 0.93332 0.93159 0.93013 0.86600 0.74216 0.80764 0.80665 0.84492 0.86584 0.89360 0.92332 0.85299 0.93176 0.94678 0.79943 0.93250 0.88270 0.89295 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 10.70 127.77 1.37 1.84 16 2 N -0.71 -4.83 5.66 -487.43 -2.76 -7.59 16 3 C 0.55 8.51 7.77 86.79 0.67 9.18 16 4 O -0.58 -14.43 16.34 -3.86 -0.06 -14.49 16 5 C -0.15 -1.95 5.87 -20.12 -0.12 -2.07 16 6 C -0.04 -0.23 9.54 22.58 0.22 -0.01 16 7 C -0.12 -0.72 10.02 22.19 0.22 -0.50 16 8 C -0.05 -0.64 9.62 22.58 0.22 -0.43 16 9 C -0.15 -2.93 5.18 -20.12 -0.10 -3.04 16 10 C 0.56 14.78 7.35 86.79 0.64 15.41 16 11 O -0.57 -18.96 16.36 -3.88 -0.06 -19.03 16 12 N -0.61 -15.38 3.02 -820.74 -2.48 -17.86 16 13 C 0.07 1.42 4.99 86.36 0.43 1.85 16 14 C 0.04 0.92 6.99 72.08 0.50 1.42 16 15 O -0.39 -12.59 10.14 -148.98 -1.51 -14.10 16 16 C 0.08 2.75 2.86 30.69 0.09 2.84 16 17 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 18 C 0.16 6.57 5.95 86.38 0.51 7.09 16 19 N -0.75 -37.56 5.30 -343.47 -1.82 -39.38 16 20 C -0.24 -14.08 10.47 84.03 0.88 -13.20 16 21 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 22 C -0.06 -3.92 5.50 84.86 0.47 -3.46 16 23 N -0.98 -64.61 13.97 21.65 0.30 -64.30 16 24 Si 0.96 47.56 27.74 68.60 1.90 49.46 16 25 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 26 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 27 H -0.26 -11.67 6.52 99.48 0.65 -11.02 16 28 C 0.09 2.62 5.94 86.36 0.51 3.13 16 29 C -0.04 -0.72 6.95 22.79 0.16 -0.56 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.42 -0.52 6.85 -92.71 -0.64 -1.15 16 34 H 0.18 -0.69 6.39 -2.91 -0.02 -0.71 16 35 H 0.18 -0.14 8.06 -2.91 -0.02 -0.16 16 36 H 0.14 1.95 8.04 -2.91 -0.02 1.92 16 37 H 0.12 1.96 4.91 -2.39 -0.01 1.95 16 38 H 0.09 1.78 8.01 -2.39 -0.02 1.76 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.37 17.80 5.41 -92.70 -0.50 17.30 16 44 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 45 H 0.10 2.94 7.06 -2.39 -0.02 2.93 16 46 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 47 H 0.13 2.67 5.93 -2.91 -0.02 2.65 16 Total: -1.00 -87.69 385.27 0.00 -87.69 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.17 Total: 20.10 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 6.67 Total: 19.50 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -6.76 Total: -129.13 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -1.64 Total: -47.62 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.90 Total: 49.46 kcal Total: -87.69 0.00 -87.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484699406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.775 kcal (2) G-P(sol) polarization free energy of solvation -87.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds