Wall clock time and date at job start Wed Apr 1 2020 04:26:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46504 * 120.00463 * 2 1
4 4 C 1.52992 * 109.47259 * 270.00419 * 3 2 1
5 5 H 1.09004 * 109.47537 * 59.99559 * 4 3 2
6 6 O 1.42896 * 109.47401 * 299.99684 * 4 3 2
7 7 C 1.53001 * 109.47190 * 179.97438 * 4 3 2
8 8 N 1.46496 * 109.47302 * 184.99750 * 7 4 3
9 9 C 1.36942 * 120.00225 * 180.02562 * 8 7 4
10 10 H 1.07998 * 119.99558 * 359.97438 * 9 8 7
11 11 C 1.38811 * 120.00234 * 180.02562 * 9 8 7
12 12 N 1.31618 * 119.99653 * 359.97438 * 11 9 8
13 13 Si 1.86804 * 119.99968 * 180.02562 * 11 9 8
14 14 H 1.48494 * 109.47140 * 89.99846 * 13 11 9
15 15 H 1.48501 * 109.46761 * 209.99954 * 13 11 9
16 16 H 1.48497 * 109.46808 * 329.99275 * 13 11 9
17 17 C 1.34776 * 119.99801 * 180.02562 * 2 1 3
18 18 O 1.21282 * 119.99940 * 180.02562 * 17 2 1
19 19 C 1.50698 * 120.00035 * 359.97438 * 17 2 1
20 20 C 1.53006 * 109.47184 * 180.02562 * 19 17 2
21 21 H 1.08999 * 110.45304 * 305.70834 * 20 19 17
22 22 C 1.51131 * 110.51161 * 183.09990 * 20 19 17
23 23 C 1.37685 * 132.84658 * 61.33299 * 22 20 19
24 24 C 1.38386 * 119.91424 * 180.02562 * 23 22 20
25 25 C 1.38301 * 119.82460 * 0.02562 * 24 23 22
26 26 C 1.37932 * 120.37874 * 359.96669 * 25 24 23
27 27 C 1.38895 * 106.34375 * 241.35736 * 22 20 19
28 28 N 1.39531 * 110.22954 * 0.02562 * 27 22 20
29 29 C 1.34672 * 112.28688 * 359.91615 * 28 27 22
30 30 O 1.21284 * 126.60662 * 180.02562 * 29 28 27
31 31 H 1.08999 * 109.46908 * 269.99915 * 1 2 3
32 32 H 1.09000 * 109.47065 * 29.99364 * 1 2 3
33 33 H 1.08990 * 109.47304 * 149.99656 * 1 2 3
34 34 H 1.09004 * 109.46561 * 30.00494 * 3 2 1
35 35 H 1.08998 * 109.47073 * 150.00154 * 3 2 1
36 36 H 0.96701 * 113.99825 * 300.00494 * 6 4 3
37 37 H 1.09001 * 109.47320 * 305.00282 * 7 4 3
38 38 H 1.09009 * 109.46953 * 65.00115 * 7 4 3
39 39 H 0.97006 * 120.00193 * 0.02562 * 8 7 4
40 40 H 0.97010 * 119.99719 * 180.02562 * 12 11 9
41 41 H 1.09001 * 109.46665 * 60.00498 * 19 17 2
42 42 H 1.08993 * 109.47304 * 300.00054 * 19 17 2
43 43 H 1.08006 * 120.04074 * 0.03058 * 23 22 20
44 44 H 1.08003 * 120.08785 * 179.97438 * 24 23 22
45 45 H 1.08004 * 119.81347 * 179.97438 * 25 24 23
46 46 H 1.08002 * 119.93607 * 179.97438 * 26 25 24
47 47 H 0.96997 * 123.87748 * 180.02562 * 28 27 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2687 0.0000
4 6 2.4525 1.7104 -1.4424
5 1 1.5001 1.8408 -1.9563
6 8 3.2247 0.7146 -2.1162
7 6 3.2171 3.0357 -1.4424
8 7 3.3570 3.5188 -2.8183
9 6 4.0114 4.6956 -3.0676
10 1 4.4239 5.2678 -2.2498
11 6 4.1435 5.1537 -4.3713
12 7 3.6402 4.4566 -5.3679
13 14 5.0368 6.7586 -4.7114
14 1 6.4808 6.4859 -4.9244
15 1 4.4682 7.3934 -5.9276
16 1 4.8711 7.6724 -3.5527
17 6 2.1388 -1.1672 -0.0005
18 8 3.3516 -1.1672 -0.0001
19 6 1.3853 -2.4723 -0.0005
20 6 2.3795 -3.6353 -0.0005
21 1 3.0801 -3.5375 -0.8298
22 6 1.6493 -4.9563 -0.0771
23 6 0.8097 -5.5089 -1.0181
24 6 0.2764 -6.7691 -0.8120
25 6 0.5888 -7.4683 0.3396
26 6 1.4297 -6.9171 1.2838
27 6 1.9711 -5.6486 1.0832
28 7 2.8306 -4.8876 1.8764
29 6 3.1218 -3.6975 1.3175
30 8 3.8404 -2.8373 1.7809
31 1 -0.3633 0.0000 1.0277
32 1 -0.3633 0.8900 -0.5137
33 1 -0.3633 -0.8899 -0.5138
34 1 1.6085 2.0283 0.5139
35 1 3.1500 1.1383 0.5138
36 1 4.0872 0.5460 -1.7126
37 1 2.6695 3.7711 -0.8530
38 1 4.2055 2.8850 -1.0080
39 1 2.9861 3.0051 -3.5528
40 1 3.7329 4.7765 -6.2790
41 1 0.7584 -2.5298 -0.8904
42 1 0.7590 -2.5302 0.8896
43 1 0.5679 -4.9595 -1.9160
44 1 -0.3828 -7.2051 -1.5481
45 1 0.1721 -8.4517 0.5004
46 1 1.6686 -7.4693 2.1808
47 1 3.1800 -5.1825 2.7319
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001507565526.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:26:56
Heat of formation + Delta-G solvation = -62.360425 kcal
Electronic energy + Delta-G solvation = -30274.143151 eV
Core-core repulsion = 26036.759126 eV
Total energy + Delta-G solvation = -4237.384025 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.94179 -39.80593 -38.60557 -37.18814 -35.90861 -35.15879 -33.96269 -33.78785
-31.29486 -30.71199 -29.70655 -29.07457 -26.88836 -26.64962 -24.78906 -22.99947
-22.64673 -21.80715 -21.19420 -20.90472 -19.10999 -18.21638 -17.44144 -17.09941
-16.83995 -16.63435 -16.14050 -15.98137 -15.83481 -15.05378 -14.88624 -14.73552
-14.46645 -14.35588 -14.21026 -13.65895 -13.55663 -13.36211 -13.11353 -13.03325
-12.86268 -12.69838 -12.51891 -12.37532 -12.18508 -12.04775 -11.92762 -11.40124
-11.28073 -11.15387 -10.88988 -10.77479 -10.57143 -10.18811 -10.11426 -9.78821
-9.70131 -9.47739 -9.28153 -8.84208 -8.40171 -8.38977 -6.86064 -5.69939
-2.98850 0.78041 0.88831 2.25491 2.66463 2.77717 2.99089 3.37481
3.47541 3.52089 3.53933 3.78868 3.98447 4.37859 4.50514 4.60324
4.61936 4.64487 4.84598 4.88192 4.96167 4.96623 5.00851 5.11559
5.17593 5.24843 5.32469 5.43716 5.49117 5.55256 5.57110 5.60346
5.69557 5.76745 5.84202 5.96192 6.07126 6.10563 6.24716 6.31159
6.47253 6.54065 6.60914 6.63812 6.82901 7.41893 7.74034 7.77950
8.26619 8.33311 8.48710 9.59718 10.18410 10.54203 11.52588
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.021777 B = 0.002008 C = 0.001967
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1285.432654 B =13940.709890 C =14231.492711
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.612 5.612
3 C 0.086 3.914
4 C 0.088 3.912
5 H 0.094 0.906
6 O -0.549 6.549
7 C 0.125 3.875
8 N -0.725 5.725
9 C -0.240 4.240
10 H 0.069 0.931
11 C -0.015 4.015
12 N -0.931 5.931
13 Si 0.908 3.092
14 H -0.290 1.290
15 H -0.291 1.291
16 H -0.282 1.282
17 C 0.512 3.488
18 O -0.506 6.506
19 C -0.114 4.114
20 C -0.066 4.066
21 H 0.133 0.867
22 C -0.139 4.139
23 C -0.061 4.061
24 C -0.143 4.143
25 C -0.084 4.084
26 C -0.144 4.144
27 C 0.150 3.850
28 N -0.670 5.670
29 C 0.529 3.471
30 O -0.461 6.461
31 H 0.053 0.947
32 H 0.075 0.925
33 H 0.070 0.930
34 H 0.083 0.917
35 H 0.087 0.913
36 H 0.375 0.625
37 H 0.024 0.976
38 H 0.021 0.979
39 H 0.388 0.612
40 H 0.255 0.745
41 H 0.108 0.892
42 H 0.092 0.908
43 H 0.131 0.869
44 H 0.129 0.871
45 H 0.129 0.871
46 H 0.125 0.875
47 H 0.411 0.589
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.541 -26.681 15.677 33.391
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 N -0.346 5.346
3 C -0.037 4.037
4 C 0.027 3.973
5 H 0.112 0.888
6 O -0.354 6.354
7 C -0.003 4.003
8 N -0.370 5.370
9 C -0.372 4.372
10 H 0.087 0.913
11 C -0.211 4.211
12 N -0.579 5.579
13 Si 0.739 3.261
14 H -0.217 1.217
15 H -0.218 1.218
16 H -0.208 1.208
17 C 0.298 3.702
18 O -0.380 6.380
19 C -0.155 4.155
20 C -0.087 4.087
21 H 0.151 0.849
22 C -0.143 4.143
23 C -0.080 4.080
24 C -0.162 4.162
25 C -0.103 4.103
26 C -0.165 4.165
27 C 0.053 3.947
28 N -0.314 5.314
29 C 0.315 3.685
30 O -0.330 6.330
31 H 0.071 0.929
32 H 0.093 0.907
33 H 0.088 0.912
34 H 0.101 0.899
35 H 0.106 0.894
36 H 0.222 0.778
37 H 0.041 0.959
38 H 0.039 0.961
39 H 0.222 0.778
40 H 0.064 0.936
41 H 0.126 0.874
42 H 0.110 0.890
43 H 0.149 0.851
44 H 0.147 0.853
45 H 0.147 0.853
46 H 0.143 0.857
47 H 0.248 0.752
Dipole moment (debyes) X Y Z Total
from point charges -11.877 -25.899 15.518 32.444
hybrid contribution 0.831 0.598 0.357 1.084
sum -11.045 -25.301 15.875 31.845
Atomic orbital electron populations
1.21799 0.79875 1.03523 1.01431 1.47628 1.06579 1.05973 1.74433
1.22228 0.98328 0.84585 0.98596 1.22456 0.95574 0.88233 0.91045
0.88815 1.86513 1.33168 1.58918 1.56793 1.21249 0.96862 0.92583
0.89645 1.42250 1.68007 1.25260 1.01461 1.19234 1.27989 0.97773
0.92174 0.91284 1.24760 1.01590 0.99082 0.95634 1.69687 1.50388
1.39277 0.98573 0.86178 0.79363 0.83259 0.77316 1.21725 1.21786
1.20809 1.20260 0.88247 0.84886 0.76784 1.90761 1.13249 1.86742
1.47272 1.21452 0.97964 0.90947 1.05094 1.20445 0.97459 0.92086
0.98747 0.84913 1.19807 1.02244 0.96245 0.95961 1.20353 0.94716
0.95077 0.97814 1.21081 1.01929 0.94874 0.98354 1.20892 0.96409
0.99654 0.93317 1.20370 1.01273 0.93373 1.01529 1.18182 0.92539
0.92830 0.91192 1.43963 1.46702 1.17873 1.22883 1.20566 0.80925
0.80533 0.86510 1.90903 1.35014 1.39819 1.67311 0.92852 0.90663
0.91169 0.89881 0.89446 0.77769 0.95855 0.96101 0.77781 0.93558
0.87404 0.88952 0.85136 0.85262 0.85283 0.85718 0.75156
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.64 10.24 59.85 0.61 1.25 16
2 N -0.61 -7.54 2.83 -181.58 -0.51 -8.05 16
3 C 0.09 1.20 5.15 -4.04 -0.02 1.18 16
4 C 0.09 1.52 3.27 -26.73 -0.09 1.43 16
5 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16
6 O -0.55 -10.64 12.09 -43.97 -0.53 -11.17 16
7 C 0.13 2.61 5.90 -4.04 -0.02 2.59 16
8 N -0.73 -19.35 5.55 -59.91 -0.33 -19.68 16
9 C -0.24 -7.01 9.99 -15.06 -0.15 -7.17 16
10 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16
11 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16
12 N -0.93 -29.24 13.06 55.49 0.72 -28.51 16
13 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16
14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
15 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16
16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
17 C 0.51 6.92 6.87 -10.99 -0.08 6.84 16
18 O -0.51 -8.76 12.15 -21.51 -0.26 -9.03 16
19 C -0.11 -1.08 3.78 -27.88 -0.11 -1.18 16
20 C -0.07 -0.67 2.60 -92.37 -0.24 -0.91 16
21 H 0.13 1.51 7.96 -51.93 -0.41 1.10 16
22 C -0.14 -1.14 5.67 -104.37 -0.59 -1.73 16
23 C -0.06 -0.40 10.04 -39.73 -0.40 -0.79 16
24 C -0.14 -0.76 10.07 -39.50 -0.40 -1.16 16
25 C -0.08 -0.42 10.01 -39.67 -0.40 -0.82 16
26 C -0.14 -0.85 10.07 -39.27 -0.40 -1.25 16
27 C 0.15 1.18 7.11 -83.69 -0.60 0.59 16
28 N -0.67 -5.83 5.89 -9.63 -0.06 -5.89 16
29 C 0.53 6.41 7.84 -10.69 -0.08 6.32 16
30 O -0.46 -7.57 15.74 -16.53 -0.26 -7.83 16
31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16
33 H 0.07 0.45 6.44 -51.93 -0.33 0.12 16
34 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16
35 H 0.09 1.34 7.42 -51.93 -0.39 0.96 16
36 H 0.37 7.01 8.45 45.56 0.38 7.40 16
37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
38 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16
39 H 0.39 11.10 7.67 -40.82 -0.31 10.79 16
40 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16
41 H 0.11 0.78 7.40 -51.93 -0.38 0.40 16
42 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16
43 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16
44 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16
45 H 0.13 0.36 8.06 -52.48 -0.42 -0.07 16
46 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16
47 H 0.41 2.70 8.96 -40.82 -0.37 2.33 16
LS Contribution 391.79 15.07 5.90 5.90
Total: -1.00 -38.11 391.79 -9.40 -47.50
By element:
Atomic # 1 Polarization: 20.03 SS G_CDS: -6.00 Total: 14.03 kcal
Atomic # 6 Polarization: 7.70 SS G_CDS: -3.05 Total: 4.66 kcal
Atomic # 7 Polarization: -61.95 SS G_CDS: -0.18 Total: -62.13 kcal
Atomic # 8 Polarization: -26.98 SS G_CDS: -1.05 Total: -28.03 kcal
Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -38.11 -9.40 -47.50 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001507565526.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.857 kcal
(2) G-P(sol) polarization free energy of solvation -38.106 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.964 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.503 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.360 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds