Wall clock time and date at job start Wed Apr 1 2020 04:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00463 * 2 1 4 4 C 1.52992 * 109.47259 * 270.00419 * 3 2 1 5 5 H 1.09004 * 109.47537 * 59.99559 * 4 3 2 6 6 O 1.42896 * 109.47401 * 299.99684 * 4 3 2 7 7 C 1.53001 * 109.47190 * 179.97438 * 4 3 2 8 8 N 1.46496 * 109.47302 * 184.99750 * 7 4 3 9 9 C 1.36942 * 120.00225 * 180.02562 * 8 7 4 10 10 H 1.07998 * 119.99558 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00234 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99653 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99968 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47140 * 89.99846 * 13 11 9 15 15 H 1.48501 * 109.46761 * 209.99954 * 13 11 9 16 16 H 1.48497 * 109.46808 * 329.99275 * 13 11 9 17 17 C 1.34776 * 119.99801 * 180.02562 * 2 1 3 18 18 O 1.21282 * 119.99940 * 180.02562 * 17 2 1 19 19 C 1.50698 * 120.00035 * 359.97438 * 17 2 1 20 20 C 1.53006 * 109.47184 * 180.02562 * 19 17 2 21 21 H 1.08999 * 110.45304 * 305.70834 * 20 19 17 22 22 C 1.51131 * 110.51161 * 183.09990 * 20 19 17 23 23 C 1.37685 * 132.84658 * 61.33299 * 22 20 19 24 24 C 1.38386 * 119.91424 * 180.02562 * 23 22 20 25 25 C 1.38301 * 119.82460 * 0.02562 * 24 23 22 26 26 C 1.37932 * 120.37874 * 359.96669 * 25 24 23 27 27 C 1.38895 * 106.34375 * 241.35736 * 22 20 19 28 28 N 1.39531 * 110.22954 * 0.02562 * 27 22 20 29 29 C 1.34672 * 112.28688 * 359.91615 * 28 27 22 30 30 O 1.21284 * 126.60662 * 180.02562 * 29 28 27 31 31 H 1.08999 * 109.46908 * 269.99915 * 1 2 3 32 32 H 1.09000 * 109.47065 * 29.99364 * 1 2 3 33 33 H 1.08990 * 109.47304 * 149.99656 * 1 2 3 34 34 H 1.09004 * 109.46561 * 30.00494 * 3 2 1 35 35 H 1.08998 * 109.47073 * 150.00154 * 3 2 1 36 36 H 0.96701 * 113.99825 * 300.00494 * 6 4 3 37 37 H 1.09001 * 109.47320 * 305.00282 * 7 4 3 38 38 H 1.09009 * 109.46953 * 65.00115 * 7 4 3 39 39 H 0.97006 * 120.00193 * 0.02562 * 8 7 4 40 40 H 0.97010 * 119.99719 * 180.02562 * 12 11 9 41 41 H 1.09001 * 109.46665 * 60.00498 * 19 17 2 42 42 H 1.08993 * 109.47304 * 300.00054 * 19 17 2 43 43 H 1.08006 * 120.04074 * 0.03058 * 23 22 20 44 44 H 1.08003 * 120.08785 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.81347 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.93607 * 179.97438 * 26 25 24 47 47 H 0.96997 * 123.87748 * 180.02562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 1.5001 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1162 7 6 3.2171 3.0357 -1.4424 8 7 3.3570 3.5188 -2.8183 9 6 4.0114 4.6956 -3.0676 10 1 4.4239 5.2678 -2.2498 11 6 4.1435 5.1537 -4.3713 12 7 3.6402 4.4566 -5.3679 13 14 5.0368 6.7586 -4.7114 14 1 6.4808 6.4859 -4.9244 15 1 4.4682 7.3934 -5.9276 16 1 4.8711 7.6724 -3.5527 17 6 2.1388 -1.1672 -0.0005 18 8 3.3516 -1.1672 -0.0001 19 6 1.3853 -2.4723 -0.0005 20 6 2.3795 -3.6353 -0.0005 21 1 3.0801 -3.5375 -0.8298 22 6 1.6493 -4.9563 -0.0771 23 6 0.8097 -5.5089 -1.0181 24 6 0.2764 -6.7691 -0.8120 25 6 0.5888 -7.4683 0.3396 26 6 1.4297 -6.9171 1.2838 27 6 1.9711 -5.6486 1.0832 28 7 2.8306 -4.8876 1.8764 29 6 3.1218 -3.6975 1.3175 30 8 3.8404 -2.8373 1.7809 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5137 33 1 -0.3633 -0.8899 -0.5138 34 1 1.6085 2.0283 0.5139 35 1 3.1500 1.1383 0.5138 36 1 4.0872 0.5460 -1.7126 37 1 2.6695 3.7711 -0.8530 38 1 4.2055 2.8850 -1.0080 39 1 2.9861 3.0051 -3.5528 40 1 3.7329 4.7765 -6.2790 41 1 0.7584 -2.5298 -0.8904 42 1 0.7590 -2.5302 0.8896 43 1 0.5679 -4.9595 -1.9160 44 1 -0.3828 -7.2051 -1.5481 45 1 0.1721 -8.4517 0.5004 46 1 1.6686 -7.4693 2.1808 47 1 3.1800 -5.1825 2.7319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507565526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:56 Heat of formation + Delta-G solvation = -62.360425 kcal Electronic energy + Delta-G solvation = -30274.143151 eV Core-core repulsion = 26036.759126 eV Total energy + Delta-G solvation = -4237.384025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.94179 -39.80593 -38.60557 -37.18814 -35.90861 -35.15879 -33.96269 -33.78785 -31.29486 -30.71199 -29.70655 -29.07457 -26.88836 -26.64962 -24.78906 -22.99947 -22.64673 -21.80715 -21.19420 -20.90472 -19.10999 -18.21638 -17.44144 -17.09941 -16.83995 -16.63435 -16.14050 -15.98137 -15.83481 -15.05378 -14.88624 -14.73552 -14.46645 -14.35588 -14.21026 -13.65895 -13.55663 -13.36211 -13.11353 -13.03325 -12.86268 -12.69838 -12.51891 -12.37532 -12.18508 -12.04775 -11.92762 -11.40124 -11.28073 -11.15387 -10.88988 -10.77479 -10.57143 -10.18811 -10.11426 -9.78821 -9.70131 -9.47739 -9.28153 -8.84208 -8.40171 -8.38977 -6.86064 -5.69939 -2.98850 0.78041 0.88831 2.25491 2.66463 2.77717 2.99089 3.37481 3.47541 3.52089 3.53933 3.78868 3.98447 4.37859 4.50514 4.60324 4.61936 4.64487 4.84598 4.88192 4.96167 4.96623 5.00851 5.11559 5.17593 5.24843 5.32469 5.43716 5.49117 5.55256 5.57110 5.60346 5.69557 5.76745 5.84202 5.96192 6.07126 6.10563 6.24716 6.31159 6.47253 6.54065 6.60914 6.63812 6.82901 7.41893 7.74034 7.77950 8.26619 8.33311 8.48710 9.59718 10.18410 10.54203 11.52588 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.002008 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.432654 B =13940.709890 C =14231.492711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.086 3.914 4 C 0.088 3.912 5 H 0.094 0.906 6 O -0.549 6.549 7 C 0.125 3.875 8 N -0.725 5.725 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.931 5.931 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.512 3.488 18 O -0.506 6.506 19 C -0.114 4.114 20 C -0.066 4.066 21 H 0.133 0.867 22 C -0.139 4.139 23 C -0.061 4.061 24 C -0.143 4.143 25 C -0.084 4.084 26 C -0.144 4.144 27 C 0.150 3.850 28 N -0.670 5.670 29 C 0.529 3.471 30 O -0.461 6.461 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.375 0.625 37 H 0.024 0.976 38 H 0.021 0.979 39 H 0.388 0.612 40 H 0.255 0.745 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.541 -26.681 15.677 33.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.037 4.037 4 C 0.027 3.973 5 H 0.112 0.888 6 O -0.354 6.354 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.372 4.372 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.298 3.702 18 O -0.380 6.380 19 C -0.155 4.155 20 C -0.087 4.087 21 H 0.151 0.849 22 C -0.143 4.143 23 C -0.080 4.080 24 C -0.162 4.162 25 C -0.103 4.103 26 C -0.165 4.165 27 C 0.053 3.947 28 N -0.314 5.314 29 C 0.315 3.685 30 O -0.330 6.330 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.222 0.778 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.222 0.778 40 H 0.064 0.936 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -11.877 -25.899 15.518 32.444 hybrid contribution 0.831 0.598 0.357 1.084 sum -11.045 -25.301 15.875 31.845 Atomic orbital electron populations 1.21799 0.79875 1.03523 1.01431 1.47628 1.06579 1.05973 1.74433 1.22228 0.98328 0.84585 0.98596 1.22456 0.95574 0.88233 0.91045 0.88815 1.86513 1.33168 1.58918 1.56793 1.21249 0.96862 0.92583 0.89645 1.42250 1.68007 1.25260 1.01461 1.19234 1.27989 0.97773 0.92174 0.91284 1.24760 1.01590 0.99082 0.95634 1.69687 1.50388 1.39277 0.98573 0.86178 0.79363 0.83259 0.77316 1.21725 1.21786 1.20809 1.20260 0.88247 0.84886 0.76784 1.90761 1.13249 1.86742 1.47272 1.21452 0.97964 0.90947 1.05094 1.20445 0.97459 0.92086 0.98747 0.84913 1.19807 1.02244 0.96245 0.95961 1.20353 0.94716 0.95077 0.97814 1.21081 1.01929 0.94874 0.98354 1.20892 0.96409 0.99654 0.93317 1.20370 1.01273 0.93373 1.01529 1.18182 0.92539 0.92830 0.91192 1.43963 1.46702 1.17873 1.22883 1.20566 0.80925 0.80533 0.86510 1.90903 1.35014 1.39819 1.67311 0.92852 0.90663 0.91169 0.89881 0.89446 0.77769 0.95855 0.96101 0.77781 0.93558 0.87404 0.88952 0.85136 0.85262 0.85283 0.85718 0.75156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.24 59.85 0.61 1.25 16 2 N -0.61 -7.54 2.83 -181.58 -0.51 -8.05 16 3 C 0.09 1.20 5.15 -4.04 -0.02 1.18 16 4 C 0.09 1.52 3.27 -26.73 -0.09 1.43 16 5 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 6 O -0.55 -10.64 12.09 -43.97 -0.53 -11.17 16 7 C 0.13 2.61 5.90 -4.04 -0.02 2.59 16 8 N -0.73 -19.35 5.55 -59.91 -0.33 -19.68 16 9 C -0.24 -7.01 9.99 -15.06 -0.15 -7.17 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 11 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 12 N -0.93 -29.24 13.06 55.49 0.72 -28.51 16 13 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.51 6.92 6.87 -10.99 -0.08 6.84 16 18 O -0.51 -8.76 12.15 -21.51 -0.26 -9.03 16 19 C -0.11 -1.08 3.78 -27.88 -0.11 -1.18 16 20 C -0.07 -0.67 2.60 -92.37 -0.24 -0.91 16 21 H 0.13 1.51 7.96 -51.93 -0.41 1.10 16 22 C -0.14 -1.14 5.67 -104.37 -0.59 -1.73 16 23 C -0.06 -0.40 10.04 -39.73 -0.40 -0.79 16 24 C -0.14 -0.76 10.07 -39.50 -0.40 -1.16 16 25 C -0.08 -0.42 10.01 -39.67 -0.40 -0.82 16 26 C -0.14 -0.85 10.07 -39.27 -0.40 -1.25 16 27 C 0.15 1.18 7.11 -83.69 -0.60 0.59 16 28 N -0.67 -5.83 5.89 -9.63 -0.06 -5.89 16 29 C 0.53 6.41 7.84 -10.69 -0.08 6.32 16 30 O -0.46 -7.57 15.74 -16.53 -0.26 -7.83 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.07 0.45 6.44 -51.93 -0.33 0.12 16 34 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 35 H 0.09 1.34 7.42 -51.93 -0.39 0.96 16 36 H 0.37 7.01 8.45 45.56 0.38 7.40 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.39 11.10 7.67 -40.82 -0.31 10.79 16 40 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.11 0.78 7.40 -51.93 -0.38 0.40 16 42 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 44 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 45 H 0.13 0.36 8.06 -52.48 -0.42 -0.07 16 46 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 47 H 0.41 2.70 8.96 -40.82 -0.37 2.33 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -38.11 391.79 -9.40 -47.50 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -6.00 Total: 14.03 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -3.05 Total: 4.66 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.18 Total: -62.13 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -1.05 Total: -28.03 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.11 -9.40 -47.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507565526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.857 kcal (2) G-P(sol) polarization free energy of solvation -38.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds