Wall clock time and date at job start Wed Apr 1 2020 04:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 120.00463 * 2 1 4 4 C 1.52992 * 109.47259 * 270.00419 * 3 2 1 5 5 H 1.09004 * 109.47537 * 59.99559 * 4 3 2 6 6 O 1.42896 * 109.47401 * 299.99684 * 4 3 2 7 7 C 1.53001 * 109.47190 * 179.97438 * 4 3 2 8 8 N 1.46496 * 109.47302 * 184.99750 * 7 4 3 9 9 C 1.36942 * 120.00225 * 180.02562 * 8 7 4 10 10 H 1.07998 * 119.99558 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00234 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99653 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99968 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47140 * 89.99846 * 13 11 9 15 15 H 1.48501 * 109.46761 * 209.99954 * 13 11 9 16 16 H 1.48497 * 109.46808 * 329.99275 * 13 11 9 17 17 C 1.34776 * 119.99801 * 180.02562 * 2 1 3 18 18 O 1.21282 * 119.99940 * 180.02562 * 17 2 1 19 19 C 1.50698 * 120.00035 * 359.97438 * 17 2 1 20 20 C 1.53006 * 109.47184 * 180.02562 * 19 17 2 21 21 H 1.08999 * 110.45304 * 305.70834 * 20 19 17 22 22 C 1.51131 * 110.51161 * 183.09990 * 20 19 17 23 23 C 1.37685 * 132.84658 * 61.33299 * 22 20 19 24 24 C 1.38386 * 119.91424 * 180.02562 * 23 22 20 25 25 C 1.38301 * 119.82460 * 0.02562 * 24 23 22 26 26 C 1.37932 * 120.37874 * 359.96669 * 25 24 23 27 27 C 1.38895 * 106.34375 * 241.35736 * 22 20 19 28 28 N 1.39531 * 110.22954 * 0.02562 * 27 22 20 29 29 C 1.34672 * 112.28688 * 359.91615 * 28 27 22 30 30 O 1.21284 * 126.60662 * 180.02562 * 29 28 27 31 31 H 1.08999 * 109.46908 * 269.99915 * 1 2 3 32 32 H 1.09000 * 109.47065 * 29.99364 * 1 2 3 33 33 H 1.08990 * 109.47304 * 149.99656 * 1 2 3 34 34 H 1.09004 * 109.46561 * 30.00494 * 3 2 1 35 35 H 1.08998 * 109.47073 * 150.00154 * 3 2 1 36 36 H 0.96701 * 113.99825 * 300.00494 * 6 4 3 37 37 H 1.09001 * 109.47320 * 305.00282 * 7 4 3 38 38 H 1.09009 * 109.46953 * 65.00115 * 7 4 3 39 39 H 0.97006 * 120.00193 * 0.02562 * 8 7 4 40 40 H 0.97010 * 119.99719 * 180.02562 * 12 11 9 41 41 H 1.09001 * 109.46665 * 60.00498 * 19 17 2 42 42 H 1.08993 * 109.47304 * 300.00054 * 19 17 2 43 43 H 1.08006 * 120.04074 * 0.03058 * 23 22 20 44 44 H 1.08003 * 120.08785 * 179.97438 * 24 23 22 45 45 H 1.08004 * 119.81347 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.93607 * 179.97438 * 26 25 24 47 47 H 0.96997 * 123.87748 * 180.02562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 1.5001 1.8408 -1.9563 6 8 3.2247 0.7146 -2.1162 7 6 3.2171 3.0357 -1.4424 8 7 3.3570 3.5188 -2.8183 9 6 4.0114 4.6956 -3.0676 10 1 4.4239 5.2678 -2.2498 11 6 4.1435 5.1537 -4.3713 12 7 3.6402 4.4566 -5.3679 13 14 5.0368 6.7586 -4.7114 14 1 6.4808 6.4859 -4.9244 15 1 4.4682 7.3934 -5.9276 16 1 4.8711 7.6724 -3.5527 17 6 2.1388 -1.1672 -0.0005 18 8 3.3516 -1.1672 -0.0001 19 6 1.3853 -2.4723 -0.0005 20 6 2.3795 -3.6353 -0.0005 21 1 3.0801 -3.5375 -0.8298 22 6 1.6493 -4.9563 -0.0771 23 6 0.8097 -5.5089 -1.0181 24 6 0.2764 -6.7691 -0.8120 25 6 0.5888 -7.4683 0.3396 26 6 1.4297 -6.9171 1.2838 27 6 1.9711 -5.6486 1.0832 28 7 2.8306 -4.8876 1.8764 29 6 3.1218 -3.6975 1.3175 30 8 3.8404 -2.8373 1.7809 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5137 33 1 -0.3633 -0.8899 -0.5138 34 1 1.6085 2.0283 0.5139 35 1 3.1500 1.1383 0.5138 36 1 4.0872 0.5460 -1.7126 37 1 2.6695 3.7711 -0.8530 38 1 4.2055 2.8850 -1.0080 39 1 2.9861 3.0051 -3.5528 40 1 3.7329 4.7765 -6.2790 41 1 0.7584 -2.5298 -0.8904 42 1 0.7590 -2.5302 0.8896 43 1 0.5679 -4.9595 -1.9160 44 1 -0.3828 -7.2051 -1.5481 45 1 0.1721 -8.4517 0.5004 46 1 1.6686 -7.4693 2.1808 47 1 3.1800 -5.1825 2.7319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507565526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:55 Heat of formation + Delta-G solvation = -90.634218 kcal Electronic energy + Delta-G solvation = -30275.369195 eV Core-core repulsion = 26036.759126 eV Total energy + Delta-G solvation = -4238.610069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.65107 -40.81874 -39.36734 -38.62772 -36.62431 -36.34171 -35.84197 -34.56383 -33.22061 -31.53055 -30.71854 -29.92027 -27.97819 -27.58936 -26.21204 -24.40429 -23.49897 -22.69045 -22.37482 -21.82303 -20.06572 -19.24660 -18.85056 -18.26066 -17.82134 -17.71863 -17.05194 -16.92590 -16.66721 -16.54442 -16.26245 -15.93363 -15.63946 -15.29896 -15.04027 -14.85309 -14.73210 -14.40589 -14.20292 -14.03912 -13.82793 -13.71047 -13.63660 -13.48737 -13.11407 -13.00894 -12.94038 -12.77686 -12.58456 -12.56582 -12.17249 -12.02146 -11.82965 -11.81486 -11.77888 -11.14516 -11.10458 -10.99104 -10.64466 -9.78325 -9.47142 -9.03224 -8.98309 -7.96219 -5.26323 0.22186 0.43156 1.44861 1.45086 1.48189 1.56376 1.77702 1.99978 2.06170 2.54480 2.88769 3.09551 3.25661 3.34965 3.51092 3.72621 3.76245 3.82257 3.99697 4.07843 4.15409 4.23315 4.25212 4.33306 4.45733 4.48102 4.51536 4.52391 4.60199 4.66444 4.70868 4.81152 4.84770 4.90128 4.96991 5.09233 5.19638 5.23883 5.44700 5.51869 5.55221 5.63232 5.68825 5.83678 6.11895 6.24596 6.47322 6.77848 6.98478 7.30818 7.33293 8.06414 8.30291 9.27187 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.002008 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.432654 B =13940.709890 C =14231.492711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.614 5.614 3 C 0.097 3.903 4 C 0.099 3.901 5 H 0.093 0.907 6 O -0.564 6.564 7 C 0.123 3.877 8 N -0.740 5.740 9 C -0.250 4.250 10 H 0.076 0.924 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.979 3.021 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.267 1.267 17 C 0.499 3.501 18 O -0.553 6.553 19 C -0.104 4.104 20 C -0.064 4.064 21 H 0.112 0.888 22 C -0.148 4.148 23 C -0.068 4.068 24 C -0.138 4.138 25 C -0.083 4.083 26 C -0.141 4.141 27 C 0.127 3.873 28 N -0.659 5.659 29 C 0.521 3.479 30 O -0.518 6.518 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.374 0.626 37 H 0.040 0.960 38 H 0.017 0.983 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.134 0.866 42 H 0.111 0.889 43 H 0.143 0.857 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.144 0.856 47 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.915 -28.205 16.443 35.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.347 5.347 3 C -0.027 4.027 4 C 0.039 3.961 5 H 0.111 0.889 6 O -0.370 6.370 7 C -0.004 4.004 8 N -0.383 5.383 9 C -0.381 4.381 10 H 0.094 0.906 11 C -0.271 4.271 12 N -0.620 5.620 13 Si 0.807 3.193 14 H -0.216 1.216 15 H -0.219 1.219 16 H -0.192 1.192 17 C 0.287 3.713 18 O -0.430 6.430 19 C -0.143 4.143 20 C -0.086 4.086 21 H 0.130 0.870 22 C -0.151 4.151 23 C -0.086 4.086 24 C -0.157 4.157 25 C -0.101 4.101 26 C -0.161 4.161 27 C 0.030 3.970 28 N -0.303 5.303 29 C 0.309 3.691 30 O -0.392 6.392 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.222 0.778 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.152 0.848 42 H 0.129 0.871 43 H 0.161 0.839 44 H 0.171 0.829 45 H 0.175 0.825 46 H 0.162 0.838 47 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -14.314 -27.473 16.334 35.021 hybrid contribution 1.497 0.921 0.151 1.764 sum -12.818 -26.552 16.486 33.779 Atomic orbital electron populations 1.22103 0.77118 1.04857 1.03213 1.47763 1.08276 1.04928 1.73705 1.21964 0.98584 0.86315 0.95876 1.22385 0.94407 0.86145 0.93190 0.88875 1.86483 1.33405 1.59389 1.57687 1.21443 0.97343 0.94720 0.86916 1.42451 1.67790 1.24721 1.03293 1.19670 1.27421 0.98497 0.92544 0.90605 1.25661 1.03034 1.02849 0.95518 1.69855 1.52177 1.41197 0.98736 0.85069 0.77716 0.79185 0.77341 1.21585 1.21857 1.19157 1.21042 0.88075 0.86358 0.75775 1.90744 1.15467 1.87502 1.49288 1.21464 0.97564 0.88210 1.07108 1.20336 0.97425 0.93899 0.96940 0.87018 1.19739 1.03191 0.95233 0.96970 1.20587 0.94381 0.95816 0.97830 1.21446 1.01302 0.94136 0.98812 1.21295 0.95502 1.00668 0.92656 1.20686 1.00577 0.92416 1.02464 1.18412 0.93421 0.93843 0.91290 1.43805 1.46352 1.17010 1.23151 1.20883 0.80354 0.80723 0.87176 1.90861 1.37588 1.41889 1.68840 0.90790 0.90294 0.88978 0.87141 0.91275 0.77809 0.94191 0.96558 0.79366 0.93958 0.84780 0.87065 0.83889 0.82861 0.82465 0.83799 0.74242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 10.24 127.77 1.31 2.28 16 2 N -0.61 -14.58 2.83 -846.79 -2.39 -16.97 16 3 C 0.10 2.66 5.15 86.38 0.44 3.11 16 4 C 0.10 3.46 3.27 30.59 0.10 3.56 16 5 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 6 O -0.56 -22.62 12.09 -140.63 -1.70 -24.32 16 7 C 0.12 5.17 5.90 86.38 0.51 5.68 16 8 N -0.74 -40.08 5.55 -343.45 -1.91 -41.98 16 9 C -0.25 -14.64 9.99 84.03 0.84 -13.81 16 10 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 11 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 12 N -0.97 -61.95 13.06 21.65 0.28 -61.67 16 13 Si 0.98 47.77 29.55 68.60 2.03 49.80 16 14 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 15 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 17 C 0.50 13.63 6.87 87.66 0.60 14.23 16 18 O -0.55 -20.27 12.15 22.84 0.28 -19.99 16 19 C -0.10 -1.87 3.78 29.85 0.11 -1.75 16 20 C -0.06 -1.34 2.60 -11.93 -0.03 -1.37 16 21 H 0.11 2.77 7.96 -2.39 -0.02 2.75 16 22 C -0.15 -2.25 5.67 -19.70 -0.11 -2.36 16 23 C -0.07 -0.71 10.04 22.17 0.22 -0.49 16 24 C -0.14 -0.98 10.07 22.32 0.22 -0.76 16 25 C -0.08 -0.53 10.01 22.21 0.22 -0.31 16 26 C -0.14 -1.29 10.07 22.47 0.23 -1.06 16 27 C 0.13 1.84 7.11 38.35 0.27 2.11 16 28 N -0.66 -11.57 5.89 -302.83 -1.78 -13.35 16 29 C 0.52 13.31 7.84 87.90 0.69 14.00 16 30 O -0.52 -18.32 15.74 18.07 0.28 -18.03 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 1.08 8.07 -2.39 -0.02 1.06 16 33 H 0.09 0.89 6.44 -2.39 -0.02 0.88 16 34 H 0.11 2.41 8.07 -2.39 -0.02 2.39 16 35 H 0.07 2.18 7.42 -2.39 -0.02 2.17 16 36 H 0.37 14.87 8.45 -74.06 -0.63 14.25 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.37 21.98 7.67 -92.70 -0.71 21.27 16 40 H 0.25 15.48 8.31 -92.70 -0.77 14.71 16 41 H 0.13 1.65 7.40 -2.39 -0.02 1.64 16 42 H 0.11 1.58 8.10 -2.39 -0.02 1.56 16 43 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.15 0.36 8.06 -2.91 -0.02 0.33 16 45 H 0.16 0.13 8.06 -2.91 -0.02 0.11 16 46 H 0.14 0.71 8.06 -2.91 -0.02 0.69 16 47 H 0.42 5.59 8.96 -92.71 -0.83 4.76 16 Total: -1.00 -85.88 391.79 0.05 -85.84 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -1.14 Total: 41.87 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 6.10 Total: 18.81 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -5.80 Total: -133.98 kcal Atomic # 8 Polarization: -61.20 SS G_CDS: -1.14 Total: -62.34 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -85.88 0.05 -85.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507565526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.797 kcal (2) G-P(sol) polarization free energy of solvation -85.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds