Wall clock time and date at job start Wed Apr 1 2020 04:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34773 * 120.00284 * 2 1 4 4 O 1.21294 * 120.00305 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99909 * 0.02562 * 3 2 1 6 6 C 1.53003 * 109.46895 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46774 * 179.97438 * 6 5 3 8 8 C 1.52995 * 109.47077 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47198 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00034 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99978 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00013 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99927 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47270 * 89.99964 * 13 11 9 15 15 H 1.48508 * 109.47122 * 210.00018 * 13 11 9 16 16 H 1.48507 * 109.47271 * 329.99784 * 13 11 9 17 17 C 1.39940 * 119.99717 * 179.97438 * 2 1 3 18 18 C 1.38917 * 119.95908 * 89.97848 * 17 2 1 19 19 C 1.37901 * 120.07186 * 179.97438 * 18 17 2 20 20 C 1.39365 * 119.99560 * 0.02562 * 19 18 17 21 21 C 1.48421 * 120.03919 * 179.97438 * 20 19 18 22 22 N 1.34065 * 126.67568 * 359.69118 * 21 20 19 23 23 N 1.28982 * 107.26619 * 179.87127 * 22 21 20 24 24 N 1.28733 * 108.94864 * 0.39699 * 23 22 21 25 25 H 0.96998 * 125.33735 * 179.77522 * 24 23 22 26 26 N 1.28872 * 109.32178 * 359.74548 * 24 23 22 27 27 C 1.39349 * 119.92264 * 0.02562 * 20 19 18 28 28 C 1.38077 * 119.92709 * 359.97438 * 27 20 19 29 29 F 1.35098 * 119.99966 * 180.02562 * 28 27 20 30 30 H 1.09008 * 109.46964 * 270.00109 * 1 2 3 31 31 H 1.09002 * 109.47266 * 29.99520 * 1 2 3 32 32 H 1.08995 * 109.47551 * 150.00115 * 1 2 3 33 33 H 1.08993 * 109.46961 * 300.00087 * 5 3 2 34 34 H 1.09002 * 109.46893 * 60.00054 * 5 3 2 35 35 H 1.09002 * 109.47352 * 299.99957 * 6 5 3 36 36 H 1.09002 * 109.47081 * 60.00444 * 6 5 3 37 37 H 1.09002 * 109.47193 * 300.00111 * 7 6 5 38 38 H 1.08997 * 109.47293 * 60.00158 * 7 6 5 39 39 H 1.09002 * 109.46919 * 299.99934 * 8 7 6 40 40 H 1.08997 * 109.47212 * 59.99763 * 8 7 6 41 41 H 0.96999 * 119.99887 * 180.02562 * 12 11 9 42 42 H 1.07992 * 119.96171 * 0.02692 * 18 17 2 43 43 H 1.08000 * 119.99986 * 180.30056 * 19 18 17 44 44 H 1.07995 * 120.03715 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3797 3.6352 0.0011 7 6 1.6148 4.9602 0.0011 8 6 2.6090 6.1231 0.0009 9 6 1.8555 7.4282 0.0015 10 1 0.7755 7.4283 0.0015 11 6 2.5450 8.6223 0.0020 12 7 1.8874 9.7612 0.0020 13 14 4.4129 8.6222 0.0013 14 1 4.9074 8.6231 -1.3989 15 1 4.9083 9.8342 0.7020 16 1 4.9082 7.4092 0.7004 17 6 2.1646 -1.2120 0.0005 18 6 2.5110 -1.8135 -1.2027 19 6 3.2009 -3.0075 -1.2049 20 6 3.5509 -3.6122 0.0010 21 6 4.2929 -4.8976 -0.0003 22 7 4.6872 -5.5936 -1.0761 23 7 5.3002 -6.6448 -0.6485 24 7 5.2964 -6.6363 0.6388 25 1 5.6905 -7.3177 1.2055 26 7 4.6875 -5.5800 1.0564 27 6 3.2023 -3.0092 1.2079 28 6 2.5115 -1.8136 1.2063 29 9 2.1733 -1.2274 2.3756 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5138 33 1 0.7584 2.5302 -0.8891 34 1 0.7591 2.5298 0.8909 35 1 3.0064 3.5770 0.8911 36 1 3.0063 3.5778 -0.8890 37 1 0.9884 5.0181 -0.8891 38 1 0.9878 5.0178 0.8908 39 1 3.2357 6.0653 0.8909 40 1 3.2356 6.0652 -0.8890 41 1 2.3725 10.6012 0.0020 42 1 2.2405 -1.3451 -2.1374 43 1 3.4739 -3.4718 -2.1411 44 1 3.4729 -3.4759 2.1434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609261228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:44 Heat of formation + Delta-G solvation = 64.122485 kcal Electronic energy + Delta-G solvation = -28646.046904 eV Core-core repulsion = 24322.980035 eV Total energy + Delta-G solvation = -4323.066869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.22999 -44.97836 -40.68337 -39.02964 -36.11144 -35.05873 -34.80860 -33.84097 -32.59459 -31.27246 -30.86284 -29.75662 -27.13956 -26.32737 -25.25803 -24.66425 -23.10190 -22.72036 -21.67783 -20.05025 -19.82208 -19.62989 -18.01008 -17.65996 -17.37349 -17.05303 -16.88347 -16.53465 -15.88258 -15.78674 -15.68954 -14.68165 -14.51674 -14.43386 -14.20916 -13.93773 -13.64999 -13.32737 -13.17854 -13.13432 -12.86458 -12.62736 -12.48846 -12.38375 -12.12516 -12.03387 -11.87668 -11.73988 -11.60004 -11.33217 -11.11803 -10.73696 -10.53763 -10.06212 -9.83276 -9.64373 -9.50306 -9.41348 -9.24593 -9.11736 -9.03965 -8.48306 -5.99615 -3.97031 0.01488 0.64416 0.68629 1.71037 1.73054 2.46938 2.55933 3.03263 3.07854 3.36312 3.43392 3.49591 3.54757 3.88095 4.35715 4.51154 4.52116 4.55272 4.64732 4.71480 4.77494 4.91336 5.01038 5.05553 5.17340 5.27100 5.35040 5.36058 5.40964 5.52614 5.69275 5.72909 5.75015 5.85279 5.98164 6.01652 6.12651 6.38312 6.50927 6.67713 6.80144 6.95805 7.01333 7.38973 7.51776 7.61070 7.85680 8.00975 8.59163 9.05363 9.63870 11.13841 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.001749 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.257582 B =16001.733300 C =16555.829562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.589 5.589 3 C 0.518 3.482 4 O -0.519 6.519 5 C -0.134 4.134 6 C -0.108 4.108 7 C -0.102 4.102 8 C -0.016 4.016 9 C -0.520 4.520 10 H 0.071 0.929 11 C 0.065 3.935 12 N -0.906 5.906 13 Si 0.879 3.121 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.264 1.264 17 C 0.133 3.867 18 C -0.083 4.083 19 C -0.077 4.077 20 C 0.011 3.989 21 C 0.219 3.781 22 N -0.263 5.263 23 N -0.046 5.046 24 N -0.225 5.225 25 H 0.477 0.523 26 N -0.289 5.289 27 C -0.111 4.111 28 C 0.108 3.892 29 F -0.126 7.126 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.016 0.984 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -37.301 0.638 37.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.322 5.322 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.173 4.173 6 C -0.146 4.146 7 C -0.140 4.140 8 C -0.053 4.053 9 C -0.558 4.558 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.545 5.545 13 Si 0.706 3.294 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.189 1.189 17 C 0.040 3.960 18 C -0.102 4.102 19 C -0.098 4.098 20 C 0.007 3.993 21 C -0.061 4.061 22 N -0.136 5.136 23 N -0.041 5.041 24 N -0.071 5.071 25 H 0.332 0.668 26 N -0.140 5.140 27 C -0.132 4.132 28 C 0.087 3.913 29 F -0.104 7.104 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.658 -37.566 0.404 37.574 hybrid contribution 0.888 0.093 0.887 1.259 sum 1.546 -37.473 1.291 37.527 Atomic orbital electron populations 1.21962 0.77491 1.04039 1.02793 1.45536 1.07318 1.03258 1.76123 1.21352 0.88306 0.84958 0.74521 1.90736 1.14111 1.87000 1.47365 1.21820 1.00078 0.91026 1.04408 1.21524 0.97160 0.92875 1.03018 1.21472 0.98659 0.92842 1.00993 1.19577 0.95319 0.94070 0.96339 1.21185 0.95033 0.89014 1.50531 0.91084 1.25037 0.98374 0.95554 0.94606 1.69919 1.35717 0.97393 1.51471 0.86784 0.86371 0.77661 0.78541 1.20310 1.21460 1.18903 1.17731 0.98131 0.88325 0.91773 1.21210 0.96960 0.94527 0.97493 1.21125 0.96487 0.94512 0.97707 1.16915 0.99107 0.89560 0.93702 1.23496 1.00600 0.97484 0.84512 1.76109 1.11718 1.00374 1.25377 1.78947 1.14935 1.16288 0.93924 1.47750 1.36257 1.17214 1.05889 0.66818 1.74956 1.13918 0.98401 1.26747 1.20982 0.98844 0.94292 0.99115 1.17725 0.99540 0.92770 0.81289 1.91539 1.90153 1.83452 1.45251 0.91877 0.89534 0.90715 0.88568 0.88600 0.91719 0.91702 0.92793 0.92764 0.96614 0.97041 0.92828 0.83676 0.83370 0.83268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.23 59.84 0.61 1.13 16 2 N -0.59 -6.20 2.73 -120.72 -0.33 -6.53 16 3 C 0.52 7.07 7.64 -10.99 -0.08 6.99 16 4 O -0.52 -9.24 15.95 5.54 0.09 -9.15 16 5 C -0.13 -1.65 4.25 -27.88 -0.12 -1.77 16 6 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 7 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 8 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 9 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 10 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 11 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 12 N -0.91 -28.37 13.96 55.43 0.77 -27.59 16 13 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 17 C 0.13 1.39 4.46 -83.57 -0.37 1.02 16 18 C -0.08 -0.70 9.95 -39.45 -0.39 -1.09 16 19 C -0.08 -0.61 9.69 -39.29 -0.38 -0.99 16 20 C 0.01 0.09 5.88 -104.87 -0.62 -0.52 16 21 C 0.22 1.93 7.93 -156.29 -1.24 0.69 16 22 N -0.26 -2.43 12.23 32.15 0.39 -2.04 16 23 N -0.05 -0.35 13.47 60.35 0.81 0.47 16 24 N -0.22 -1.11 7.90 60.35 0.48 -0.63 16 25 H 0.48 0.04 8.96 -340.37 -3.05 -3.01 16 26 N -0.29 -2.15 12.08 32.17 0.39 -1.76 16 27 C -0.11 -1.00 9.67 -39.23 -0.38 -1.38 16 28 C 0.11 1.16 7.30 -39.30 -0.29 0.87 16 29 F -0.13 -1.53 17.07 2.25 0.04 -1.49 16 30 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.09 0.46 6.44 -51.93 -0.33 0.12 16 32 H 0.07 0.36 8.05 -51.93 -0.42 -0.06 16 33 H 0.10 0.97 7.40 -51.93 -0.38 0.58 16 34 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 35 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.15 0.95 7.88 -52.49 -0.41 0.53 16 44 H 0.15 1.16 7.88 -52.49 -0.41 0.75 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -37.62 383.91 -8.62 -46.24 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -8.32 Total: -7.87 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -4.06 Total: -13.19 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 2.52 Total: -38.09 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.62 -8.62 -46.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609261228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.362 kcal (2) G-P(sol) polarization free energy of solvation -37.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds