Wall clock time and date at job start Wed Apr 1 2020 04:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34773 * 120.00284 * 2 1 4 4 O 1.21294 * 120.00305 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99909 * 0.02562 * 3 2 1 6 6 C 1.53003 * 109.46895 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46774 * 179.97438 * 6 5 3 8 8 C 1.52995 * 109.47077 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47198 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00034 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99978 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00013 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99927 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47270 * 89.99964 * 13 11 9 15 15 H 1.48508 * 109.47122 * 210.00018 * 13 11 9 16 16 H 1.48507 * 109.47271 * 329.99784 * 13 11 9 17 17 C 1.39940 * 119.99717 * 179.97438 * 2 1 3 18 18 C 1.38917 * 119.95908 * 89.97848 * 17 2 1 19 19 C 1.37901 * 120.07186 * 179.97438 * 18 17 2 20 20 C 1.39365 * 119.99560 * 0.02562 * 19 18 17 21 21 C 1.48421 * 120.03919 * 179.97438 * 20 19 18 22 22 N 1.34065 * 126.67568 * 359.69118 * 21 20 19 23 23 N 1.28982 * 107.26619 * 179.87127 * 22 21 20 24 24 N 1.28733 * 108.94864 * 0.39699 * 23 22 21 25 25 H 0.96998 * 125.33735 * 179.77522 * 24 23 22 26 26 N 1.28872 * 109.32178 * 359.74548 * 24 23 22 27 27 C 1.39349 * 119.92264 * 0.02562 * 20 19 18 28 28 C 1.38077 * 119.92709 * 359.97438 * 27 20 19 29 29 F 1.35098 * 119.99966 * 180.02562 * 28 27 20 30 30 H 1.09008 * 109.46964 * 270.00109 * 1 2 3 31 31 H 1.09002 * 109.47266 * 29.99520 * 1 2 3 32 32 H 1.08995 * 109.47551 * 150.00115 * 1 2 3 33 33 H 1.08993 * 109.46961 * 300.00087 * 5 3 2 34 34 H 1.09002 * 109.46893 * 60.00054 * 5 3 2 35 35 H 1.09002 * 109.47352 * 299.99957 * 6 5 3 36 36 H 1.09002 * 109.47081 * 60.00444 * 6 5 3 37 37 H 1.09002 * 109.47193 * 300.00111 * 7 6 5 38 38 H 1.08997 * 109.47293 * 60.00158 * 7 6 5 39 39 H 1.09002 * 109.46919 * 299.99934 * 8 7 6 40 40 H 1.08997 * 109.47212 * 59.99763 * 8 7 6 41 41 H 0.96999 * 119.99887 * 180.02562 * 12 11 9 42 42 H 1.07992 * 119.96171 * 0.02692 * 18 17 2 43 43 H 1.08000 * 119.99986 * 180.30056 * 19 18 17 44 44 H 1.07995 * 120.03715 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3797 3.6352 0.0011 7 6 1.6148 4.9602 0.0011 8 6 2.6090 6.1231 0.0009 9 6 1.8555 7.4282 0.0015 10 1 0.7755 7.4283 0.0015 11 6 2.5450 8.6223 0.0020 12 7 1.8874 9.7612 0.0020 13 14 4.4129 8.6222 0.0013 14 1 4.9074 8.6231 -1.3989 15 1 4.9083 9.8342 0.7020 16 1 4.9082 7.4092 0.7004 17 6 2.1646 -1.2120 0.0005 18 6 2.5110 -1.8135 -1.2027 19 6 3.2009 -3.0075 -1.2049 20 6 3.5509 -3.6122 0.0010 21 6 4.2929 -4.8976 -0.0003 22 7 4.6872 -5.5936 -1.0761 23 7 5.3002 -6.6448 -0.6485 24 7 5.2964 -6.6363 0.6388 25 1 5.6905 -7.3177 1.2055 26 7 4.6875 -5.5800 1.0564 27 6 3.2023 -3.0092 1.2079 28 6 2.5115 -1.8136 1.2063 29 9 2.1733 -1.2274 2.3756 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5138 33 1 0.7584 2.5302 -0.8891 34 1 0.7591 2.5298 0.8909 35 1 3.0064 3.5770 0.8911 36 1 3.0063 3.5778 -0.8890 37 1 0.9884 5.0181 -0.8891 38 1 0.9878 5.0178 0.8908 39 1 3.2357 6.0653 0.8909 40 1 3.2356 6.0652 -0.8890 41 1 2.3725 10.6012 0.0020 42 1 2.2405 -1.3451 -2.1374 43 1 3.4739 -3.4718 -2.1411 44 1 3.4729 -3.4759 2.1434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609261228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:43 Heat of formation + Delta-G solvation = 39.583440 kcal Electronic energy + Delta-G solvation = -28647.110996 eV Core-core repulsion = 24322.980035 eV Total energy + Delta-G solvation = -4324.130962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.06526 -45.54510 -41.54491 -39.83917 -37.02423 -36.58436 -35.39802 -34.67728 -34.38354 -32.19004 -31.88693 -30.89218 -27.92667 -27.67102 -25.89836 -25.57471 -23.92951 -23.76082 -22.75081 -21.72433 -20.56669 -20.36087 -18.88323 -18.72454 -18.22269 -18.16112 -17.80722 -17.70369 -16.85697 -16.62990 -16.49272 -16.30483 -15.70935 -15.36040 -15.15469 -14.92512 -14.67168 -14.52296 -14.13443 -13.91036 -13.79835 -13.72139 -13.65325 -13.55113 -13.23628 -13.07644 -12.86414 -12.75855 -12.46163 -12.32155 -12.20828 -12.06733 -11.95104 -11.74959 -11.49537 -11.32645 -11.25208 -10.93553 -10.74749 -10.11510 -10.04727 -9.75759 -8.28604 -6.31310 -0.64749 0.00186 0.07950 1.06963 1.34171 1.35139 1.36832 1.48209 1.49468 1.77899 2.36658 2.38854 2.45202 2.91284 3.06956 3.20453 3.61218 3.70710 3.88748 3.99510 3.99702 4.09051 4.14263 4.17180 4.31797 4.44797 4.57151 4.61604 4.67767 4.75211 4.77306 4.83590 4.86839 4.96244 5.02217 5.12389 5.15381 5.20915 5.28817 5.32325 5.54962 5.61836 5.67535 5.69841 5.75202 6.12135 6.31030 6.76726 7.03197 7.05527 7.33524 8.87865 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.001749 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.257582 B =16001.733300 C =16555.829562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.581 5.581 3 C 0.516 3.484 4 O -0.571 6.571 5 C -0.126 4.126 6 C -0.098 4.098 7 C -0.093 4.093 8 C -0.018 4.018 9 C -0.530 4.530 10 H 0.039 0.961 11 C 0.005 3.995 12 N -0.950 5.950 13 Si 0.945 3.055 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.254 1.254 17 C 0.114 3.886 18 C -0.080 4.080 19 C -0.069 4.069 20 C 0.008 3.992 21 C 0.207 3.793 22 N -0.283 5.283 23 N -0.052 5.052 24 N -0.198 5.198 25 H 0.496 0.504 26 N -0.291 5.291 27 C -0.108 4.108 28 C 0.086 3.914 29 F -0.140 7.140 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.011 0.989 40 H 0.013 0.987 41 H 0.266 0.734 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.028 -39.539 0.149 39.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.313 5.313 3 C 0.308 3.692 4 O -0.449 6.449 5 C -0.165 4.165 6 C -0.137 4.137 7 C -0.130 4.130 8 C -0.055 4.055 9 C -0.568 4.568 10 H 0.057 0.943 11 C -0.192 4.192 12 N -0.591 5.591 13 Si 0.769 3.231 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.178 1.178 17 C 0.022 3.978 18 C -0.099 4.099 19 C -0.090 4.090 20 C 0.005 3.995 21 C -0.073 4.073 22 N -0.155 5.155 23 N -0.047 5.047 24 N -0.049 5.049 25 H 0.355 0.645 26 N -0.144 5.144 27 C -0.129 4.129 28 C 0.066 3.934 29 F -0.118 7.118 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.032 0.968 41 H 0.074 0.926 42 H 0.180 0.820 43 H 0.182 0.818 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.952 -39.862 -0.081 39.873 hybrid contribution 0.721 0.684 1.070 1.460 sum 1.673 -39.178 0.988 39.226 Atomic orbital electron populations 1.22277 0.75032 1.05988 1.03759 1.45540 1.08775 1.02483 1.74474 1.21495 0.87709 0.86080 0.73952 1.90713 1.16198 1.87797 1.50177 1.21736 0.99129 0.88728 1.06891 1.21308 0.97500 0.93081 1.01776 1.21330 0.97741 0.92412 1.01564 1.19581 0.96041 0.93851 0.96041 1.21556 0.94059 0.91303 1.49884 0.94293 1.25966 1.03729 0.95145 0.94337 1.70057 1.37891 0.98204 1.52917 0.85726 0.79994 0.78160 0.79195 1.19140 1.20791 1.17776 1.17973 0.98995 0.88498 0.92344 1.21376 0.96492 0.94556 0.97448 1.21316 0.95491 0.94079 0.98113 1.17012 0.98962 0.89679 0.93839 1.23519 1.01214 0.97760 0.84777 1.76085 1.12526 1.00958 1.25950 1.78892 1.15069 1.16006 0.94770 1.47812 1.34706 1.16801 1.05540 0.64485 1.74927 1.14013 0.98863 1.26578 1.21030 0.98341 0.93785 0.99739 1.17934 1.00826 0.93646 0.81026 1.91496 1.90471 1.83815 1.46030 0.91390 0.87785 0.88681 0.85519 0.86565 0.93398 0.92664 0.91986 0.92440 0.97028 0.96832 0.92551 0.82013 0.81806 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.23 127.77 1.31 2.03 16 2 N -0.58 -11.26 2.73 -654.24 -1.78 -13.05 16 3 C 0.52 13.43 7.64 87.66 0.67 14.10 16 4 O -0.57 -20.28 15.95 -3.07 -0.05 -20.33 16 5 C -0.13 -2.82 4.25 29.85 0.13 -2.69 16 6 C -0.10 -3.16 4.50 30.60 0.14 -3.02 16 7 C -0.09 -3.51 5.15 30.59 0.16 -3.35 16 8 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 9 C -0.53 -31.16 9.66 25.60 0.25 -30.91 16 10 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 11 C 0.00 0.30 5.47 84.66 0.46 0.76 16 12 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 13 Si 0.95 46.11 27.47 68.60 1.88 47.99 16 14 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 15 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 16 H -0.25 -11.85 6.54 99.48 0.65 -11.20 16 17 C 0.11 2.27 4.46 38.23 0.17 2.44 16 18 C -0.08 -1.23 9.95 22.35 0.22 -1.01 16 19 C -0.07 -0.99 9.69 22.46 0.22 -0.77 16 20 C 0.01 0.14 5.88 -20.02 -0.12 0.02 16 21 C 0.21 3.40 7.93 137.36 1.09 4.49 16 22 N -0.28 -4.88 12.23 -52.19 -0.64 -5.52 16 23 N -0.05 -0.72 13.47 37.02 0.50 -0.22 16 24 N -0.20 -1.61 7.90 37.02 0.29 -1.31 16 25 H 0.50 -0.91 8.96 -347.54 -3.12 -4.02 16 26 N -0.29 -3.91 12.08 -52.14 -0.63 -4.54 16 27 C -0.11 -1.88 9.67 22.50 0.22 -1.66 16 28 C 0.09 1.82 7.30 22.45 0.16 1.98 16 29 F -0.14 -3.40 17.07 44.97 0.77 -2.63 16 30 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.10 0.72 6.44 -2.39 -0.02 0.71 16 32 H 0.09 0.62 8.05 -2.39 -0.02 0.61 16 33 H 0.13 2.09 7.40 -2.39 -0.02 2.07 16 34 H 0.12 2.17 8.11 -2.39 -0.02 2.15 16 35 H 0.05 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 40 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 41 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 43 H 0.16 1.79 7.88 -2.91 -0.02 1.77 16 44 H 0.16 2.37 7.88 -2.91 -0.02 2.35 16 Total: -1.00 -82.85 383.91 3.72 -79.13 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -2.12 Total: -1.06 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 5.19 Total: -18.34 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -1.96 Total: -84.77 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.77 Total: -2.63 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 47.99 kcal Total: -82.85 3.72 -79.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609261228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.718 kcal (2) G-P(sol) polarization free energy of solvation -82.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds