Wall clock time and date at job start Wed Apr 1 2020 04:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46012 * 118.53874 * 2 1 4 4 C 1.52991 * 110.04306 * 161.85948 * 3 2 1 5 5 N 1.47189 * 108.71515 * 50.30692 * 4 3 2 6 6 C 1.46909 * 110.99591 * 167.62220 * 5 4 3 7 7 C 1.50707 * 109.46526 * 188.93765 * 6 5 4 8 8 O 1.21273 * 120.00204 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99327 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99681 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47169 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96224 * 270.02412 * 11 10 9 13 13 C 1.38281 * 120.13505 * 179.97438 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47010 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46908 * 119.99967 * 21 19 17 24 24 H 1.48504 * 109.47373 * 240.00300 * 21 19 17 25 25 C 1.38073 * 119.96539 * 89.99807 * 11 10 9 26 26 C 1.46894 * 110.17402 * 290.98425 * 5 4 3 27 27 C 1.33718 * 118.53823 * 180.02562 * 2 1 3 28 28 O 1.21275 * 118.62456 * 1.67283 * 27 2 1 29 29 H 1.08998 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47448 * 299.97850 * 1 2 3 31 31 H 1.09001 * 109.47304 * 59.97959 * 1 2 3 32 32 H 1.08997 * 109.37449 * 282.03654 * 3 2 1 33 33 H 1.09006 * 109.37082 * 41.80082 * 3 2 1 34 34 H 1.09000 * 109.61229 * 290.52617 * 4 3 2 35 35 H 1.09005 * 109.58625 * 170.06976 * 4 3 2 36 36 H 1.08997 * 109.47058 * 68.93552 * 6 5 4 37 37 H 1.08997 * 109.46892 * 308.93272 * 6 5 4 38 38 H 0.96993 * 120.00552 * 0.02562 * 9 7 6 39 39 H 1.09004 * 109.46757 * 59.99773 * 10 9 7 40 40 H 1.08998 * 109.46890 * 300.00426 * 10 9 7 41 41 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 42 42 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 43 43 H 1.08006 * 120.03715 * 180.31908 * 14 13 12 44 44 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.03547 * 0.04988 * 25 11 10 46 46 H 1.09001 * 109.38903 * 170.45580 * 26 5 4 47 47 H 1.09004 * 109.39092 * 290.25246 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6129 1.0908 0.4475 5 7 4.2091 -0.0013 -0.3387 6 6 5.6676 -0.0386 -0.1664 7 6 6.2642 -1.0166 -1.1455 8 8 5.5454 -1.6231 -1.9111 9 7 7.5967 -1.2171 -1.1703 10 6 8.1768 -2.1683 -2.1217 11 6 9.6729 -2.2065 -1.9450 12 6 10.4764 -1.3451 -2.6702 13 6 11.8496 -1.3767 -2.5105 14 6 12.4225 -2.2646 -1.6210 15 6 11.6191 -3.1344 -0.8958 16 8 12.1797 -4.0123 -0.0253 17 6 13.5264 -4.0733 0.0005 18 1 14.1096 -3.3846 -0.5928 19 6 14.1625 -5.0201 0.7888 20 7 13.4521 -5.8592 1.5112 21 14 16.0283 -5.1050 0.8240 22 1 16.5883 -4.0599 -0.0701 23 1 16.5080 -4.8781 2.2110 24 1 16.4718 -6.4440 0.3596 25 6 10.2401 -3.1008 -1.0591 26 6 3.6018 -1.2853 0.0359 27 6 2.1038 -1.1747 -0.0005 28 8 1.4465 -2.1934 -0.0321 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5135 0.8902 31 1 -0.3634 0.5141 -0.8898 32 1 2.1469 1.7028 -1.0056 33 1 1.6618 1.9666 0.6854 34 1 3.6381 0.8348 1.5067 35 1 4.1723 2.0109 0.2781 36 1 5.9054 -0.3514 0.8503 37 1 6.0803 0.9539 -0.3471 38 1 8.1717 -0.7323 -0.5577 39 1 7.9384 -1.8561 -3.1385 40 1 7.7644 -3.1608 -1.9403 41 1 10.0303 -0.6464 -3.3625 42 1 12.4743 -0.7032 -3.0783 43 1 13.4947 -2.2853 -1.4928 44 1 13.8972 -6.5218 2.0623 45 1 9.6122 -3.7733 -0.4935 46 1 3.9247 -2.0562 -0.6639 47 1 3.9188 -1.5554 1.0432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649762952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:46 Heat of formation + Delta-G solvation = -75.943871 kcal Electronic energy + Delta-G solvation = -29199.331977 eV Core-core repulsion = 24961.358929 eV Total energy + Delta-G solvation = -4237.973048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.69203 -40.97526 -40.45353 -38.57770 -38.06608 -36.30769 -35.66514 -34.28704 -32.44451 -31.18546 -30.82151 -30.38308 -28.06999 -27.35500 -26.42435 -25.48226 -23.61879 -23.24463 -22.40644 -21.46327 -19.70434 -19.63128 -18.93504 -18.41845 -17.82798 -17.62773 -17.15335 -16.86219 -16.77563 -16.57026 -16.18444 -16.08250 -15.68868 -15.57476 -15.51435 -15.13081 -14.92649 -14.59453 -14.33549 -14.20155 -13.92184 -13.81495 -13.53093 -13.51547 -13.33922 -13.12488 -13.02906 -12.87878 -12.56907 -12.52159 -12.36138 -12.28929 -12.26328 -12.08346 -11.21185 -11.11842 -10.86693 -10.78784 -10.08650 -9.78709 -9.74781 -9.50481 -9.02623 -8.47319 -6.15764 0.39376 0.71279 1.35897 1.43544 1.43884 1.53922 1.67708 1.96383 2.13499 2.17305 2.73905 2.89335 3.16237 3.41424 3.48371 3.78200 3.79916 3.89130 4.02838 4.10409 4.25195 4.28264 4.32103 4.39165 4.42820 4.44136 4.54112 4.55718 4.62586 4.64373 4.70125 4.74304 4.76193 4.92295 4.99739 5.02881 5.12331 5.26550 5.33969 5.41657 5.58715 5.63440 5.71500 5.72906 5.83433 6.01800 6.17719 6.30989 6.60988 6.97772 7.00921 7.29955 7.78359 8.75979 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020259 B = 0.001736 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.772275 B =16125.343182 C =16796.478668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.114 3.886 4 C 0.032 3.968 5 N -0.528 5.528 6 C 0.040 3.960 7 C 0.507 3.493 8 O -0.571 6.571 9 N -0.714 5.714 10 C 0.175 3.825 11 C -0.057 4.057 12 C -0.167 4.167 13 C -0.069 4.069 14 C -0.235 4.235 15 C 0.111 3.889 16 O -0.233 6.233 17 C -0.411 4.411 18 H 0.104 0.896 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.249 1.249 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.182 4.182 26 C 0.040 3.960 27 C 0.516 3.484 28 O -0.602 6.602 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.057 0.943 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.150 0.850 38 H 0.414 0.586 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.120 0.880 44 H 0.272 0.728 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.100 22.746 -2.299 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.338 5.338 3 C -0.008 4.008 4 C -0.095 4.095 5 N -0.255 5.255 6 C -0.090 4.090 7 C 0.294 3.706 8 O -0.450 6.450 9 N -0.367 5.367 10 C 0.052 3.948 11 C -0.058 4.058 12 C -0.186 4.186 13 C -0.087 4.087 14 C -0.254 4.254 15 C 0.061 3.939 16 O -0.140 6.140 17 C -0.487 4.487 18 H 0.122 0.878 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.172 1.172 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.202 4.202 26 C -0.090 4.090 27 C 0.305 3.695 28 O -0.484 6.484 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.134 0.866 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.109 0.891 37 H 0.167 0.833 38 H 0.250 0.750 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.167 0.833 42 H 0.167 0.833 43 H 0.137 0.863 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.118 0.882 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.134 21.596 -3.069 28.367 hybrid contribution 1.326 -0.996 1.262 2.084 sum -16.808 20.600 -1.807 26.649 Atomic orbital electron populations 1.21863 0.78596 1.03479 1.03385 1.47507 1.08235 1.06565 1.71499 1.21847 0.91693 0.83418 1.03849 1.22771 0.94902 0.95952 0.95853 1.62133 1.03697 1.03009 1.56627 1.22159 0.87604 1.01525 0.97698 1.21167 0.81713 0.83108 0.84604 1.90694 1.60742 1.50500 1.43031 1.45981 1.07323 1.44082 1.39275 1.19969 0.87576 0.93303 0.93968 1.19443 0.94678 0.95630 0.96015 1.21000 0.92966 1.01668 1.02938 1.21168 0.95533 0.96439 0.95562 1.21372 1.00369 1.00864 1.02793 1.19871 0.93597 0.90410 0.90007 1.83948 1.23450 1.54011 1.52588 1.21865 0.78782 1.18905 1.29167 0.87841 1.26586 1.06143 0.94283 0.95150 1.70190 1.38358 1.19529 1.27886 0.84530 0.73617 0.79087 0.78992 1.17207 1.19409 1.19675 1.20218 0.91427 1.04186 1.04361 1.22284 0.89638 0.94968 1.02147 1.20408 0.90801 0.83349 0.74984 1.90683 1.67782 1.36629 1.53259 0.92014 0.89450 0.90435 0.90167 0.86637 0.92445 0.84744 0.89118 0.83268 0.74955 0.89693 0.92445 0.83285 0.83324 0.86250 0.91918 0.87642 0.88245 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.55 127.77 1.35 2.28 16 2 N -0.61 -10.20 3.23 -850.19 -2.74 -12.94 16 3 C 0.11 0.88 6.64 86.47 0.57 1.45 16 4 C 0.03 0.22 5.60 86.25 0.48 0.70 16 5 N -0.53 -8.17 4.47 -905.42 -4.05 -12.22 16 6 C 0.04 0.49 5.44 85.56 0.47 0.96 16 7 C 0.51 11.01 7.59 87.66 0.67 11.67 16 8 O -0.57 -17.88 14.31 -3.01 -0.04 -17.92 16 9 N -0.71 -14.73 5.55 -466.77 -2.59 -17.32 16 10 C 0.18 4.53 5.80 85.63 0.50 5.03 16 11 C -0.06 -1.72 5.25 -19.88 -0.10 -1.82 16 12 C -0.17 -4.46 9.70 22.30 0.22 -4.24 16 13 C -0.07 -2.07 10.04 22.25 0.22 -1.85 16 14 C -0.23 -9.39 9.17 22.39 0.21 -9.19 16 15 C 0.11 5.24 6.65 22.58 0.15 5.39 16 16 O -0.23 -13.62 9.76 -22.74 -0.22 -13.84 16 17 C -0.41 -23.24 9.49 67.92 0.64 -22.60 16 18 H 0.10 5.32 5.21 -2.91 -0.02 5.30 16 19 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 20 N -0.92 -55.94 13.67 21.61 0.30 -55.64 16 21 Si 1.02 41.90 29.55 68.60 2.03 43.93 16 22 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 23 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 25 C -0.18 -7.26 9.65 22.39 0.22 -7.04 16 26 C 0.04 0.90 5.14 85.42 0.44 1.34 16 27 C 0.52 13.06 7.57 87.68 0.66 13.73 16 28 O -0.60 -20.72 16.07 -3.02 -0.05 -20.77 16 29 H 0.06 1.22 6.67 -2.39 -0.02 1.21 16 30 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.12 0.16 8.13 -2.38 -0.02 0.14 16 34 H 0.06 0.35 8.08 -2.39 -0.02 0.33 16 35 H 0.13 0.07 7.91 -2.38 -0.02 0.05 16 36 H 0.09 0.81 8.05 -2.39 -0.02 0.79 16 37 H 0.15 0.74 7.93 -2.39 -0.02 0.72 16 38 H 0.41 6.79 8.46 -92.71 -0.78 6.00 16 39 H 0.08 2.06 8.09 -2.38 -0.02 2.04 16 40 H 0.06 1.70 8.08 -2.39 -0.02 1.68 16 41 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 43 H 0.12 4.90 5.64 -2.91 -0.02 4.89 16 44 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 45 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 46 H 0.10 2.98 6.00 -2.39 -0.01 2.97 16 47 H 0.08 1.52 8.05 -2.38 -0.02 1.50 16 Total: -1.00 -85.94 390.89 0.00 -85.94 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.22 Total: 25.85 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 7.15 Total: -5.07 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -9.08 Total: -98.12 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -0.31 Total: -52.53 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -85.94 0.00 -85.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649762952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.992 kcal (2) G-P(sol) polarization free energy of solvation -85.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds