Wall clock time and date at job start Wed Apr 1 2020 04:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00147 * 2 1 4 4 C 1.53007 * 109.46809 * 269.99865 * 3 2 1 5 5 H 1.08994 * 109.46999 * 304.99656 * 4 3 2 6 6 O 1.42897 * 109.46852 * 64.99879 * 4 3 2 7 7 C 1.53003 * 109.46888 * 184.99729 * 4 3 2 8 8 N 1.46494 * 109.46690 * 180.02562 * 7 4 3 9 9 C 1.36937 * 119.99879 * 180.02562 * 8 7 4 10 10 H 1.08008 * 120.00080 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00293 * 180.02562 * 9 8 7 12 12 N 1.31612 * 119.99943 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99998 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47367 * 89.99796 * 13 11 9 15 15 H 1.48510 * 109.46857 * 210.00054 * 13 11 9 16 16 H 1.48503 * 109.47408 * 329.99533 * 13 11 9 17 17 C 1.34778 * 120.00010 * 179.97438 * 2 1 3 18 18 O 1.21276 * 119.99981 * 185.61138 * 17 2 1 19 19 C 1.50699 * 119.99840 * 5.61137 * 17 2 1 20 20 H 1.08997 * 109.36173 * 42.28428 * 19 17 2 21 21 C 1.52646 * 109.36038 * 282.69301 * 19 17 2 22 22 N 1.46138 * 110.97557 * 290.31686 * 21 19 17 23 23 C 1.34690 * 120.98286 * 319.53798 * 22 21 19 24 24 O 1.21548 * 120.35556 * 187.99978 * 23 22 21 25 25 C 1.47815 * 119.27889 * 7.97908 * 23 22 21 26 26 C 1.39330 * 120.92738 * 193.30972 * 25 23 22 27 27 C 1.38057 * 119.61020 * 179.45333 * 26 25 23 28 28 C 1.38376 * 120.17078 * 359.93143 * 27 26 25 29 29 C 1.38413 * 120.41478 * 0.27328 * 28 27 26 30 30 C 1.37849 * 119.97009 * 0.03713 * 29 28 27 31 31 H 1.08997 * 109.47040 * 264.22354 * 1 2 3 32 32 H 1.08996 * 109.47326 * 24.22190 * 1 2 3 33 33 H 1.09000 * 109.47273 * 144.22719 * 1 2 3 34 34 H 1.08995 * 109.47121 * 29.99539 * 3 2 1 35 35 H 1.09001 * 109.47548 * 149.99707 * 3 2 1 36 36 H 0.96699 * 114.00361 * 60.00114 * 6 4 3 37 37 H 1.08997 * 109.47198 * 300.00287 * 7 4 3 38 38 H 1.09000 * 109.46976 * 59.99724 * 7 4 3 39 39 H 0.96996 * 120.00338 * 359.97438 * 8 7 4 40 40 H 0.96998 * 120.00296 * 180.02562 * 12 11 9 41 41 H 1.08992 * 109.17801 * 169.92758 * 21 19 17 42 42 H 1.09004 * 109.17819 * 50.69809 * 21 19 17 43 43 H 0.96998 * 119.51106 * 139.81525 * 22 21 19 44 44 H 1.07995 * 120.19073 * 359.43328 * 26 25 23 45 45 H 1.08003 * 119.91505 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.79467 * 180.30256 * 28 27 26 47 47 H 1.08001 * 120.01464 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 2.9643 0.9130 -1.9815 6 8 1.2061 1.9934 -2.0814 7 6 3.3238 2.9680 -1.4444 8 7 3.5675 3.3911 -2.8256 9 6 4.3283 4.5015 -3.0775 10 1 4.7485 5.0655 -2.2578 11 6 4.5588 4.9028 -4.3861 12 7 4.0464 4.2158 -5.3850 13 14 5.5973 6.4170 -4.7296 14 1 7.0221 6.0203 -4.8628 15 1 5.1409 7.0546 -5.9908 16 1 5.4544 7.3801 -3.6083 17 6 2.1389 -1.1672 0.0005 18 8 3.3473 -1.1697 0.1032 19 6 1.3908 -2.4692 -0.1265 20 1 0.6127 -2.3666 -0.8829 21 6 0.7472 -2.8159 1.2135 22 7 1.7605 -3.1779 2.2024 23 6 2.8202 -3.9369 1.8633 24 8 3.5773 -4.3521 2.7188 25 6 3.0522 -4.2597 0.4396 26 6 3.9576 -5.2517 0.0686 27 6 4.1448 -5.5387 -1.2688 28 6 3.4362 -4.8460 -2.2346 29 6 2.5389 -3.8569 -1.8708 30 6 2.3477 -3.5565 -0.5390 31 1 -0.3633 -0.1034 1.0224 32 1 -0.3634 0.9371 -0.4216 33 1 -0.3634 -0.8338 -0.6007 34 1 1.6085 2.0284 0.5137 35 1 3.1499 1.1384 0.5139 36 1 0.6955 2.6948 -1.6543 37 1 2.8121 3.7653 -0.9054 38 1 4.2746 2.7521 -0.9570 39 1 3.1905 2.8844 -3.5618 40 1 4.2077 4.4960 -6.2995 41 1 0.0647 -3.6545 1.0766 42 1 0.1861 -1.9540 1.5749 43 1 1.6664 -2.8704 3.1175 44 1 4.5098 -5.7925 0.8228 45 1 4.8457 -6.3064 -1.5619 46 1 3.5838 -5.0789 -3.2788 47 1 1.9889 -3.3206 -2.6299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677085144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:34 Heat of formation + Delta-G solvation = -70.202065 kcal Electronic energy + Delta-G solvation = -30933.648048 eV Core-core repulsion = 26695.923984 eV Total energy + Delta-G solvation = -4237.724065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45267 -39.72290 -38.37541 -37.58406 -36.23229 -35.31909 -34.02292 -32.59859 -31.39719 -31.28331 -30.15933 -29.01674 -26.96664 -25.78048 -24.51864 -24.23522 -22.99314 -21.94313 -21.23887 -20.48395 -18.93472 -17.99039 -17.58055 -17.18450 -17.16731 -16.66720 -16.23601 -15.73248 -15.60684 -15.22504 -14.96493 -14.79496 -14.65381 -14.45817 -14.06499 -13.91341 -13.77176 -13.50145 -13.21083 -12.98499 -12.85860 -12.82159 -12.55099 -12.47555 -12.39969 -12.08279 -11.74373 -11.58133 -11.30456 -10.94369 -10.82561 -10.72474 -10.21557 -10.20255 -10.10026 -9.83789 -9.69941 -9.49698 -9.17528 -9.01471 -8.89530 -8.60722 -6.92094 -5.74787 -3.04238 0.60360 1.06951 2.41141 2.61560 2.74416 2.90683 3.44194 3.48914 3.50631 3.60347 3.93927 4.18841 4.20489 4.31223 4.53711 4.55183 4.69513 4.71475 4.79969 4.84263 4.91689 4.98014 5.04944 5.10663 5.14866 5.21262 5.25182 5.46061 5.53982 5.55985 5.63014 5.71080 5.75397 5.94638 6.01668 6.09523 6.19720 6.20409 6.36147 6.47161 6.52991 6.63963 6.71696 6.83019 7.15888 7.68993 7.91785 7.96107 8.00590 8.43420 9.54943 10.12448 10.48398 11.47618 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.002532 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.356400 B =11056.748561 C =11881.971675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.606 5.606 3 C 0.086 3.914 4 C 0.087 3.913 5 H 0.099 0.901 6 O -0.550 6.550 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.518 3.482 18 O -0.517 6.517 19 C -0.092 4.092 20 H 0.125 0.875 21 C 0.123 3.877 22 N -0.727 5.727 23 C 0.574 3.426 24 O -0.535 6.535 25 C -0.120 4.120 26 C -0.059 4.059 27 C -0.127 4.127 28 C -0.089 4.089 29 C -0.115 4.115 30 C -0.032 4.032 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.367 0.633 37 H 0.020 0.980 38 H 0.027 0.973 39 H 0.389 0.611 40 H 0.255 0.745 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.406 0.594 44 H 0.135 0.865 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 -19.204 13.012 26.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C -0.037 4.037 4 C 0.027 3.973 5 H 0.117 0.883 6 O -0.354 6.354 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.304 3.696 18 O -0.391 6.391 19 C -0.114 4.114 20 H 0.143 0.857 21 C -0.002 4.002 22 N -0.380 5.380 23 C 0.362 3.638 24 O -0.412 6.412 25 C -0.123 4.123 26 C -0.078 4.078 27 C -0.145 4.145 28 C -0.107 4.107 29 C -0.133 4.133 30 C -0.033 4.033 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.213 0.787 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.223 0.777 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.243 0.757 44 H 0.153 0.847 45 H 0.148 0.852 46 H 0.148 0.852 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.093 -19.801 12.947 26.570 hybrid contribution 0.167 1.513 0.057 1.524 sum -11.926 -18.288 13.004 25.412 Atomic orbital electron populations 1.21923 0.79393 1.04418 1.00977 1.47679 1.07004 1.05662 1.73617 1.22259 0.98554 0.84306 0.98571 1.22533 0.85163 0.98159 0.91441 0.88349 1.86611 1.32298 1.58971 1.57568 1.21211 0.96387 0.92878 0.89784 1.42226 1.61766 1.32245 1.00738 1.19221 1.23696 1.02644 0.91835 0.91285 1.24756 1.01143 0.99425 0.95571 1.69678 1.49030 1.40881 0.98232 0.86185 0.80063 0.82569 0.77323 1.21676 1.21735 1.20782 1.20194 0.87953 0.84551 0.76871 1.90778 1.13888 1.86786 1.47670 1.20684 0.98525 0.92300 0.99841 0.85711 1.21294 0.90051 1.01971 0.86870 1.45564 1.24831 1.54183 1.13430 1.18186 0.80048 0.76996 0.88560 1.90795 1.46258 1.52415 1.51711 1.19570 1.00413 0.99985 0.92378 1.21177 0.94827 0.95185 0.96628 1.21193 1.00144 1.00630 0.92496 1.21362 0.94693 0.94712 0.99974 1.20971 0.99356 0.98128 0.94805 1.19331 0.95884 0.94570 0.93499 0.92787 0.89802 0.91166 0.90023 0.88776 0.78699 0.96269 0.95554 0.77683 0.93507 0.89968 0.88675 0.75691 0.84671 0.85151 0.85195 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 9.09 59.85 0.54 1.01 16 2 N -0.61 -6.31 2.84 -181.57 -0.52 -6.83 16 3 C 0.09 1.06 5.08 -4.04 -0.02 1.04 16 4 C 0.09 1.41 3.30 -26.73 -0.09 1.32 16 5 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 6 O -0.55 -8.47 12.02 -35.23 -0.42 -8.90 16 7 C 0.13 2.52 5.92 -4.04 -0.02 2.49 16 8 N -0.72 -18.84 5.49 -59.91 -0.33 -19.17 16 9 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 10 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 13 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.52 6.42 6.71 -10.99 -0.07 6.34 16 18 O -0.52 -8.95 15.63 5.56 0.09 -8.87 16 19 C -0.09 -0.80 1.96 -93.15 -0.18 -0.98 16 20 H 0.13 0.73 6.56 -51.93 -0.34 0.39 16 21 C 0.12 0.77 6.27 -4.42 -0.03 0.74 16 22 N -0.73 -6.77 5.44 -61.72 -0.34 -7.10 16 23 C 0.57 7.58 7.81 -12.38 -0.10 7.48 16 24 O -0.53 -8.76 17.37 5.32 0.09 -8.67 16 25 C -0.12 -1.50 5.71 -105.07 -0.60 -2.10 16 26 C -0.06 -0.68 9.63 -39.24 -0.38 -1.06 16 27 C -0.13 -1.21 10.04 -39.60 -0.40 -1.60 16 28 C -0.09 -0.83 10.04 -39.47 -0.40 -1.23 16 29 C -0.11 -1.16 9.72 -39.66 -0.39 -1.55 16 30 C -0.03 -0.35 4.28 -104.31 -0.45 -0.80 16 31 H 0.05 0.21 7.17 -51.93 -0.37 -0.16 16 32 H 0.08 0.51 7.24 -51.93 -0.38 0.14 16 33 H 0.07 0.31 6.19 -51.93 -0.32 -0.01 16 34 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.09 1.33 7.35 -51.93 -0.38 0.95 16 36 H 0.37 4.39 9.04 45.56 0.41 4.80 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.39 10.86 7.54 -40.82 -0.31 10.55 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.36 6.11 -51.93 -0.32 0.04 16 43 H 0.41 3.17 8.92 -40.82 -0.36 2.81 16 44 H 0.14 1.47 7.78 -52.49 -0.41 1.06 16 45 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -39.42 388.63 -8.39 -47.81 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.70 Total: 12.63 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -2.82 Total: 3.54 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.46 Total: -61.11 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.24 Total: -26.43 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.42 -8.39 -47.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677085144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.389 kcal (2) G-P(sol) polarization free energy of solvation -39.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds