Wall clock time and date at job start Wed Apr 1 2020 04:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00147 * 2 1 4 4 C 1.53007 * 109.46809 * 269.99865 * 3 2 1 5 5 H 1.08994 * 109.46999 * 304.99656 * 4 3 2 6 6 O 1.42897 * 109.46852 * 64.99879 * 4 3 2 7 7 C 1.53003 * 109.46888 * 184.99729 * 4 3 2 8 8 N 1.46494 * 109.46690 * 180.02562 * 7 4 3 9 9 C 1.36937 * 119.99879 * 180.02562 * 8 7 4 10 10 H 1.08008 * 120.00080 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00293 * 180.02562 * 9 8 7 12 12 N 1.31612 * 119.99943 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99998 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47367 * 89.99796 * 13 11 9 15 15 H 1.48510 * 109.46857 * 210.00054 * 13 11 9 16 16 H 1.48503 * 109.47408 * 329.99533 * 13 11 9 17 17 C 1.34778 * 120.00010 * 179.97438 * 2 1 3 18 18 O 1.21276 * 119.99981 * 185.61138 * 17 2 1 19 19 C 1.50699 * 119.99840 * 5.61137 * 17 2 1 20 20 H 1.08997 * 109.36173 * 42.28428 * 19 17 2 21 21 C 1.52646 * 109.36038 * 282.69301 * 19 17 2 22 22 N 1.46138 * 110.97557 * 290.31686 * 21 19 17 23 23 C 1.34690 * 120.98286 * 319.53798 * 22 21 19 24 24 O 1.21548 * 120.35556 * 187.99978 * 23 22 21 25 25 C 1.47815 * 119.27889 * 7.97908 * 23 22 21 26 26 C 1.39330 * 120.92738 * 193.30972 * 25 23 22 27 27 C 1.38057 * 119.61020 * 179.45333 * 26 25 23 28 28 C 1.38376 * 120.17078 * 359.93143 * 27 26 25 29 29 C 1.38413 * 120.41478 * 0.27328 * 28 27 26 30 30 C 1.37849 * 119.97009 * 0.03713 * 29 28 27 31 31 H 1.08997 * 109.47040 * 264.22354 * 1 2 3 32 32 H 1.08996 * 109.47326 * 24.22190 * 1 2 3 33 33 H 1.09000 * 109.47273 * 144.22719 * 1 2 3 34 34 H 1.08995 * 109.47121 * 29.99539 * 3 2 1 35 35 H 1.09001 * 109.47548 * 149.99707 * 3 2 1 36 36 H 0.96699 * 114.00361 * 60.00114 * 6 4 3 37 37 H 1.08997 * 109.47198 * 300.00287 * 7 4 3 38 38 H 1.09000 * 109.46976 * 59.99724 * 7 4 3 39 39 H 0.96996 * 120.00338 * 359.97438 * 8 7 4 40 40 H 0.96998 * 120.00296 * 180.02562 * 12 11 9 41 41 H 1.08992 * 109.17801 * 169.92758 * 21 19 17 42 42 H 1.09004 * 109.17819 * 50.69809 * 21 19 17 43 43 H 0.96998 * 119.51106 * 139.81525 * 22 21 19 44 44 H 1.07995 * 120.19073 * 359.43328 * 26 25 23 45 45 H 1.08003 * 119.91505 * 179.97438 * 27 26 25 46 46 H 1.07998 * 119.79467 * 180.30256 * 28 27 26 47 47 H 1.08001 * 120.01464 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 2.9643 0.9130 -1.9815 6 8 1.2061 1.9934 -2.0814 7 6 3.3238 2.9680 -1.4444 8 7 3.5675 3.3911 -2.8256 9 6 4.3283 4.5015 -3.0775 10 1 4.7485 5.0655 -2.2578 11 6 4.5588 4.9028 -4.3861 12 7 4.0464 4.2158 -5.3850 13 14 5.5973 6.4170 -4.7296 14 1 7.0221 6.0203 -4.8628 15 1 5.1409 7.0546 -5.9908 16 1 5.4544 7.3801 -3.6083 17 6 2.1389 -1.1672 0.0005 18 8 3.3473 -1.1697 0.1032 19 6 1.3908 -2.4692 -0.1265 20 1 0.6127 -2.3666 -0.8829 21 6 0.7472 -2.8159 1.2135 22 7 1.7605 -3.1779 2.2024 23 6 2.8202 -3.9369 1.8633 24 8 3.5773 -4.3521 2.7188 25 6 3.0522 -4.2597 0.4396 26 6 3.9576 -5.2517 0.0686 27 6 4.1448 -5.5387 -1.2688 28 6 3.4362 -4.8460 -2.2346 29 6 2.5389 -3.8569 -1.8708 30 6 2.3477 -3.5565 -0.5390 31 1 -0.3633 -0.1034 1.0224 32 1 -0.3634 0.9371 -0.4216 33 1 -0.3634 -0.8338 -0.6007 34 1 1.6085 2.0284 0.5137 35 1 3.1499 1.1384 0.5139 36 1 0.6955 2.6948 -1.6543 37 1 2.8121 3.7653 -0.9054 38 1 4.2746 2.7521 -0.9570 39 1 3.1905 2.8844 -3.5618 40 1 4.2077 4.4960 -6.2995 41 1 0.0647 -3.6545 1.0766 42 1 0.1861 -1.9540 1.5749 43 1 1.6664 -2.8704 3.1175 44 1 4.5098 -5.7925 0.8228 45 1 4.8457 -6.3064 -1.5619 46 1 3.5838 -5.0789 -3.2788 47 1 1.9889 -3.3206 -2.6299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677085144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:33 Heat of formation + Delta-G solvation = -102.916087 kcal Electronic energy + Delta-G solvation = -30935.066634 eV Core-core repulsion = 26695.923984 eV Total energy + Delta-G solvation = -4239.142651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.26360 -40.67049 -39.25890 -38.81080 -37.07368 -36.42803 -35.78438 -33.44627 -33.17967 -32.07020 -31.32352 -30.04879 -27.84417 -27.05919 -25.48396 -25.02820 -24.55735 -22.99131 -22.57878 -21.33428 -19.73601 -19.26196 -18.78202 -18.39227 -18.01823 -17.75224 -17.12425 -16.74259 -16.71930 -16.41168 -16.17609 -15.90015 -15.77124 -15.46428 -15.35111 -15.00627 -14.73369 -14.60716 -14.43430 -14.02424 -13.88139 -13.75318 -13.44672 -13.41557 -13.34789 -13.06791 -12.95612 -12.78240 -12.56574 -12.50178 -12.19844 -12.06302 -12.00586 -11.83974 -11.27156 -11.13725 -11.00661 -10.91087 -10.29108 -9.97008 -9.78895 -9.54088 -9.03774 -7.96632 -5.26711 -0.21916 0.28434 1.45288 1.47996 1.52568 1.56206 1.73841 1.93865 2.18478 2.53950 2.79274 3.26156 3.34591 3.45361 3.47256 3.57572 3.59715 3.79109 3.84085 4.02655 4.11407 4.16705 4.20201 4.29576 4.38582 4.42028 4.49058 4.51538 4.53232 4.64410 4.70647 4.78491 4.85831 4.89886 4.94891 5.09666 5.19375 5.25766 5.33942 5.43604 5.44403 5.50338 5.76685 5.89839 6.02040 6.24207 6.36000 6.89976 7.05333 7.12887 7.30871 8.06325 8.29773 9.26662 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.002532 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.356400 B =11056.748561 C =11881.971675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.601 5.601 3 C 0.097 3.903 4 C 0.108 3.892 5 H 0.062 0.938 6 O -0.557 6.557 7 C 0.122 3.878 8 N -0.740 5.740 9 C -0.250 4.250 10 H 0.076 0.924 11 C -0.076 4.076 12 N -0.968 5.968 13 Si 0.976 3.024 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.267 1.267 17 C 0.510 3.490 18 O -0.579 6.579 19 C -0.087 4.087 20 H 0.161 0.839 21 C 0.119 3.881 22 N -0.717 5.717 23 C 0.563 3.437 24 O -0.585 6.585 25 C -0.147 4.147 26 C -0.080 4.080 27 C -0.128 4.128 28 C -0.092 4.092 29 C -0.126 4.126 30 C -0.041 4.041 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.385 0.615 37 H 0.041 0.959 38 H 0.016 0.984 39 H 0.375 0.625 40 H 0.252 0.748 41 H 0.114 0.886 42 H 0.129 0.871 43 H 0.413 0.587 44 H 0.128 0.872 45 H 0.154 0.846 46 H 0.155 0.845 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.060 -18.541 13.292 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.332 5.332 3 C -0.027 4.027 4 C 0.048 3.952 5 H 0.080 0.920 6 O -0.364 6.364 7 C -0.005 4.005 8 N -0.383 5.383 9 C -0.382 4.382 10 H 0.094 0.906 11 C -0.268 4.268 12 N -0.618 5.618 13 Si 0.804 3.196 14 H -0.217 1.217 15 H -0.219 1.219 16 H -0.191 1.191 17 C 0.299 3.701 18 O -0.458 6.458 19 C -0.108 4.108 20 H 0.179 0.821 21 C -0.005 4.005 22 N -0.369 5.369 23 C 0.352 3.648 24 O -0.466 6.466 25 C -0.150 4.150 26 C -0.099 4.099 27 C -0.146 4.146 28 C -0.110 4.110 29 C -0.144 4.144 30 C -0.042 4.042 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.136 0.864 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.207 0.793 40 H 0.061 0.939 41 H 0.132 0.868 42 H 0.147 0.853 43 H 0.250 0.750 44 H 0.146 0.854 45 H 0.172 0.828 46 H 0.173 0.827 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.796 -19.103 13.277 27.570 hybrid contribution 0.924 1.310 -0.032 1.604 sum -13.872 -17.792 13.244 26.161 Atomic orbital electron populations 1.22332 0.76188 1.05702 1.03618 1.47770 1.08843 1.04291 1.72322 1.21999 0.98838 0.86317 0.95568 1.22116 0.84648 0.95051 0.93434 0.92034 1.86578 1.31717 1.59824 1.58234 1.21435 0.96978 0.95289 0.86841 1.42429 1.61524 1.31628 1.02725 1.19653 1.23271 1.03115 0.92159 0.90644 1.25622 1.02958 1.02727 0.95495 1.69839 1.50880 1.42769 0.98353 0.85110 0.77993 0.79167 0.77288 1.21652 1.21883 1.19134 1.20903 0.87475 0.86079 0.75683 1.90758 1.16722 1.87733 1.50547 1.20822 0.98387 0.89298 1.02295 0.82125 1.21690 0.89242 1.04618 0.84908 1.45599 1.24236 1.52502 1.14566 1.18487 0.80498 0.77127 0.88644 1.90748 1.48282 1.54773 1.52830 1.19753 1.01632 1.01112 0.92486 1.21343 0.95271 0.95706 0.97590 1.21488 1.00355 1.01046 0.91697 1.21746 0.93951 0.94095 1.01204 1.21316 0.99674 0.98407 0.94959 1.19608 0.96196 0.94875 0.93540 0.89553 0.89437 0.88970 0.86393 0.91085 0.76648 0.94095 0.96572 0.79279 0.93949 0.86849 0.85271 0.74968 0.85391 0.82786 0.82694 0.83450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 9.09 127.77 1.16 1.63 16 2 N -0.60 -10.95 2.84 -846.77 -2.40 -13.36 16 3 C 0.10 2.22 5.08 86.38 0.44 2.66 16 4 C 0.11 3.42 3.30 30.60 0.10 3.52 16 5 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 6 O -0.56 -16.11 12.02 -148.98 -1.79 -17.90 16 7 C 0.12 4.83 5.92 86.38 0.51 5.34 16 8 N -0.74 -38.76 5.49 -343.46 -1.89 -40.65 16 9 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 10 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 11 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 12 N -0.97 -60.62 13.06 21.65 0.28 -60.33 16 13 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 14 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 15 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 C 0.51 11.96 6.71 87.66 0.59 12.55 16 18 O -0.58 -20.58 15.63 -3.02 -0.05 -20.62 16 19 C -0.09 -1.29 1.96 -12.43 -0.02 -1.32 16 20 H 0.16 1.17 6.56 -2.39 -0.02 1.16 16 21 C 0.12 1.07 6.27 86.33 0.54 1.61 16 22 N -0.72 -12.61 5.44 -467.51 -2.54 -15.15 16 23 C 0.56 15.41 7.81 86.79 0.68 16.09 16 24 O -0.58 -20.50 17.37 -3.87 -0.07 -20.56 16 25 C -0.15 -3.77 5.71 -20.15 -0.12 -3.89 16 26 C -0.08 -1.94 9.63 22.49 0.22 -1.73 16 27 C -0.13 -2.42 10.04 22.26 0.22 -2.20 16 28 C -0.09 -1.62 10.04 22.34 0.22 -1.40 16 29 C -0.13 -2.40 9.72 22.22 0.22 -2.18 16 30 C -0.04 -0.87 4.28 -19.66 -0.08 -0.95 16 31 H 0.09 0.15 7.17 -2.39 -0.02 0.13 16 32 H 0.09 0.66 7.24 -2.39 -0.02 0.64 16 33 H 0.09 0.32 6.19 -2.39 -0.01 0.30 16 34 H 0.12 1.85 8.07 -2.39 -0.02 1.83 16 35 H 0.07 2.01 7.35 -2.39 -0.02 1.99 16 36 H 0.38 8.06 9.04 -74.06 -0.67 7.39 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.38 21.37 7.54 -92.71 -0.70 20.67 16 40 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.13 0.30 6.11 -2.39 -0.01 0.29 16 43 H 0.41 6.04 8.92 -92.71 -0.83 5.21 16 44 H 0.13 3.12 7.78 -2.91 -0.02 3.09 16 45 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 46 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 47 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -91.27 388.63 -1.60 -92.87 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: -1.16 Total: 34.62 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 5.98 Total: 12.29 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -6.55 Total: -129.49 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -1.90 Total: -59.09 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -91.27 -1.60 -92.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677085144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.047 kcal (2) G-P(sol) polarization free energy of solvation -91.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds