Wall clock time and date at job start Wed Apr 1 2020 04:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 120.00003 * 2 1 4 4 H 1.07998 * 120.00248 * 204.67108 * 3 2 1 5 5 C 1.38816 * 120.00246 * 24.67351 * 3 2 1 6 6 N 1.31622 * 119.99639 * 6.71480 * 5 3 2 7 7 Si 1.86796 * 120.00082 * 186.71645 * 5 3 2 8 8 H 1.48500 * 109.47474 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47204 * 120.00173 * 7 5 3 10 10 H 1.48500 * 109.46949 * 239.99784 * 7 5 3 11 11 C 1.46496 * 119.99922 * 179.97438 * 2 1 3 12 12 C 1.53009 * 109.47129 * 270.00243 * 11 2 1 13 13 O 1.42899 * 109.47064 * 65.00248 * 12 11 2 14 14 C 1.42894 * 113.99979 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47059 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.47332 * 64.99659 * 15 14 13 17 17 C 1.46499 * 120.00004 * 270.00176 * 16 15 14 18 18 C 1.34782 * 119.99870 * 89.99939 * 16 15 14 19 19 O 1.21626 * 119.99752 * 3.39322 * 18 16 15 20 20 C 1.47164 * 119.99915 * 183.39541 * 18 16 15 21 21 C 1.35760 * 125.13056 * 172.65416 * 20 18 16 22 22 C 1.46417 * 106.13685 * 180.02562 * 21 20 18 23 23 N 1.32944 * 133.88389 * 179.32791 * 22 21 20 24 24 C 1.31441 * 121.38060 * 180.02562 * 23 22 21 25 25 C 1.38861 * 121.18645 * 0.02562 * 24 23 22 26 26 C 1.38211 * 119.71274 * 359.97438 * 25 24 23 27 27 C 1.39305 * 118.33206 * 0.26956 * 26 25 24 28 28 O 1.34581 * 133.42537 * 179.72333 * 27 26 25 29 29 H 1.08994 * 109.47202 * 275.05817 * 1 2 3 30 30 H 1.08997 * 109.46977 * 35.05892 * 1 2 3 31 31 H 1.09000 * 109.47141 * 155.05258 * 1 2 3 32 32 H 0.97003 * 119.99736 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47284 * 150.00489 * 11 2 1 34 34 H 1.09002 * 109.47080 * 30.00375 * 11 2 1 35 35 H 1.08997 * 109.46785 * 304.99872 * 12 11 2 36 36 H 1.08995 * 109.46807 * 185.00218 * 12 11 2 37 37 H 1.08999 * 109.47286 * 59.99541 * 14 13 12 38 38 H 1.09002 * 109.46786 * 299.99501 * 14 13 12 39 39 H 1.08997 * 109.46936 * 304.99594 * 15 14 13 40 40 H 1.09002 * 109.47018 * 185.00108 * 15 14 13 41 41 H 1.09003 * 109.46762 * 263.84584 * 17 16 15 42 42 H 1.09000 * 109.47057 * 23.84077 * 17 16 15 43 43 H 1.08996 * 109.47278 * 143.84619 * 17 16 15 44 44 H 1.07994 * 126.92624 * 359.40259 * 21 20 18 45 45 H 1.07996 * 119.40640 * 180.02562 * 24 23 22 46 46 H 1.07999 * 120.14224 * 179.97438 * 25 24 23 47 47 H 1.07997 * 120.83928 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1557 1.2286 -0.3904 5 6 1.5507 2.3332 0.5018 6 7 0.3793 2.2574 1.0972 7 14 2.4072 3.9846 0.3322 8 1 3.7026 3.8006 -0.3700 9 1 1.5475 4.9102 -0.4484 10 1 2.6525 4.5558 1.6808 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4433 13 8 1.2060 -1.9927 2.0823 14 6 1.3322 -2.4150 3.4415 15 6 -0.0568 -2.6891 4.0216 16 7 -0.6647 -3.8216 3.3187 17 6 -1.4787 -3.5901 2.1229 18 6 -0.4751 -5.0766 3.7722 19 8 0.1488 -5.2642 4.7993 20 6 -1.0230 -6.2198 3.0247 21 6 -0.7778 -7.5255 3.3040 22 6 -1.5227 -8.3010 2.3102 23 7 -1.6616 -9.6014 2.0712 24 6 -2.4120 -10.0398 1.0851 25 6 -3.0905 -9.1602 0.2520 26 6 -2.9796 -7.7980 0.4580 27 6 -2.1760 -7.3509 1.5044 28 8 -1.8534 -6.1286 1.9660 29 1 -0.3633 0.0906 1.0236 30 1 -0.3633 0.8412 -0.5903 31 1 -0.3633 -0.9318 -0.4335 32 1 -0.0391 3.0591 1.4482 33 1 3.1500 -1.1386 -0.5133 34 1 1.6084 -2.0286 -0.5130 35 1 2.9642 -0.9123 1.9820 36 1 3.0732 -2.6057 1.4450 37 1 1.8205 -1.6318 4.0215 38 1 1.9299 -3.3255 3.4850 39 1 -0.6832 -1.8058 3.8973 40 1 0.0324 -2.9250 5.0820 41 1 -2.5320 -3.5559 2.4014 42 1 -1.1927 -2.6424 1.6666 43 1 -1.3172 -4.3996 1.4110 44 1 -0.1510 -7.9137 4.0931 45 1 -2.5025 -11.1032 0.9200 46 1 -3.7023 -9.5388 -0.5535 47 1 -3.4996 -7.0976 -0.1787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689248766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:53 Heat of formation + Delta-G solvation = 4.558920 kcal Electronic energy + Delta-G solvation = -30510.223600 eV Core-core repulsion = 26275.741415 eV Total energy + Delta-G solvation = -4234.482185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.05440 -40.04057 -39.08041 -37.55293 -35.85407 -35.00293 -33.56826 -31.89513 -31.62439 -30.82706 -29.67647 -28.02109 -26.67607 -25.74862 -25.22186 -23.74711 -23.02513 -22.82039 -21.72905 -20.37450 -20.21680 -18.42418 -17.86619 -17.03552 -16.84931 -16.81695 -16.43983 -16.01843 -15.62191 -15.43864 -15.15691 -14.69495 -14.32610 -13.97364 -13.95991 -13.63321 -13.53968 -13.42223 -13.35280 -13.07718 -13.02215 -12.94977 -12.34989 -12.19981 -11.97961 -11.46990 -11.36062 -10.97513 -10.95293 -10.84531 -10.76937 -10.50885 -10.45849 -10.07239 -9.90219 -9.86741 -9.82144 -9.40744 -9.10136 -8.95611 -8.70676 -8.50906 -6.66308 -5.67545 -3.15371 0.09509 0.72525 1.41713 2.01038 2.71974 2.89191 3.34034 3.37631 3.44934 3.46455 3.59496 4.03353 4.21775 4.28054 4.44513 4.50699 4.52507 4.72091 4.93799 5.11889 5.23794 5.26104 5.34030 5.41148 5.44278 5.53252 5.56534 5.60218 5.62019 5.72820 5.77529 5.85858 5.93202 6.03525 6.11989 6.19778 6.26317 6.34390 6.52636 6.56795 6.78101 6.91855 7.12983 7.44065 7.50188 7.77065 7.81719 7.85567 7.94911 8.45742 9.30080 9.92597 10.43655 11.36301 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018356 B = 0.002294 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.020549 B =12201.691301 C =12907.818920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.597 5.597 3 C -0.254 4.254 4 H 0.066 0.934 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.367 6.367 14 C 0.047 3.953 15 C 0.119 3.881 16 N -0.586 5.586 17 C 0.074 3.926 18 C 0.593 3.407 19 O -0.518 6.518 20 C 0.004 3.996 21 C -0.110 4.110 22 C 0.064 3.936 23 N -0.441 5.441 24 C 0.101 3.899 25 C -0.145 4.145 26 C -0.058 4.058 27 C 0.010 3.990 28 O -0.167 6.167 29 H 0.033 0.967 30 H 0.036 0.964 31 H -0.009 1.009 32 H 0.250 0.750 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.022 0.978 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.177 0.823 45 H 0.167 0.833 46 H 0.151 0.849 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 -21.702 0.765 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.320 5.320 3 C -0.384 4.384 4 H 0.084 0.916 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.732 3.268 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.286 6.286 14 C -0.031 4.031 15 C -0.003 4.003 16 N -0.316 5.316 17 C -0.069 4.069 18 C 0.379 3.621 19 O -0.396 6.396 20 C -0.047 4.047 21 C -0.131 4.131 22 C -0.065 4.065 23 N -0.150 5.150 24 C -0.065 4.065 25 C -0.165 4.165 26 C -0.085 4.085 27 C -0.040 4.040 28 O -0.067 6.067 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.010 0.990 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.195 0.805 45 H 0.184 0.816 46 H 0.169 0.831 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.546 -21.862 1.720 23.192 hybrid contribution 0.287 1.432 -0.396 1.513 sum -7.259 -20.430 1.324 21.722 Atomic orbital electron populations 1.20705 0.82254 0.94525 0.99382 1.43859 1.02120 1.00200 1.85792 1.19242 0.99139 0.86097 1.33903 0.91627 1.25092 0.97481 0.98519 0.98449 1.70079 1.16437 1.27086 1.41388 0.86222 0.78912 0.84420 0.77221 1.20422 1.21709 1.21787 1.20886 0.96365 0.88800 0.91387 1.23458 0.85210 0.96769 0.98055 1.87925 1.30375 1.87303 1.22995 1.22767 0.96351 0.98252 0.85768 1.21723 0.94011 0.88074 0.96450 1.47714 1.49690 1.05359 1.28874 1.22152 0.93946 1.04581 0.86173 1.16798 0.80167 0.81268 0.83906 1.90876 1.41612 1.84131 1.22967 1.22156 0.96723 0.95731 0.90121 1.22471 1.01194 0.89682 0.99766 1.20643 0.99348 0.89755 0.96785 1.67038 1.15851 1.14198 1.17960 1.22856 0.92615 1.00763 0.90296 1.22085 1.00904 0.92300 1.01166 1.20549 0.96865 0.96226 0.94848 1.20729 1.00491 0.84245 0.98548 1.84377 1.54513 1.27800 1.40027 0.94867 0.94528 0.99023 0.93984 0.92488 0.93962 0.93390 0.95952 0.92458 0.94030 0.88478 0.88401 0.92430 0.88248 0.90324 0.80547 0.81607 0.83094 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.33 8.60 59.85 0.51 4.84 16 2 N -0.60 -14.96 2.89 -181.11 -0.52 -15.48 16 3 C -0.25 -6.93 9.66 -15.06 -0.15 -7.07 16 4 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 5 C 0.00 0.08 5.22 -17.43 -0.09 -0.01 16 6 N -0.90 -26.09 10.49 55.49 0.58 -25.51 16 7 Si 0.90 21.76 29.56 -169.99 -5.02 16.73 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 C 0.15 3.16 6.11 -4.04 -0.02 3.13 16 12 C 0.04 0.85 6.28 37.16 0.23 1.08 16 13 O -0.37 -6.89 8.84 -35.23 -0.31 -7.20 16 14 C 0.05 0.74 6.28 37.16 0.23 0.97 16 15 C 0.12 1.64 5.81 -4.04 -0.02 1.62 16 16 N -0.59 -7.98 2.84 -182.95 -0.52 -8.49 16 17 C 0.07 0.91 9.35 59.85 0.56 1.47 16 18 C 0.59 8.41 7.65 -12.63 -0.10 8.31 16 19 O -0.52 -8.38 16.40 5.25 0.09 -8.30 16 20 C 0.00 0.06 6.73 -36.85 -0.25 -0.19 16 21 C -0.11 -1.34 10.82 -37.18 -0.40 -1.75 16 22 C 0.06 0.77 7.52 -83.18 -0.63 0.15 16 23 N -0.44 -4.97 10.41 -9.87 -0.10 -5.07 16 24 C 0.10 0.76 11.17 -17.49 -0.20 0.56 16 25 C -0.14 -0.87 10.09 -39.36 -0.40 -1.27 16 26 C -0.06 -0.45 10.19 -39.19 -0.40 -0.85 16 27 C 0.01 0.11 7.42 -38.27 -0.28 -0.17 16 28 O -0.17 -1.97 7.15 3.38 0.02 -1.95 16 29 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 30 H 0.04 0.97 7.28 -51.93 -0.38 0.59 16 31 H -0.01 -0.19 7.84 -51.93 -0.41 -0.60 16 32 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 34 H 0.04 0.81 7.86 -51.93 -0.41 0.40 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.33 8.07 -51.93 -0.42 0.91 16 40 H 0.10 1.25 7.38 -51.93 -0.38 0.87 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 1.41 7.25 -51.93 -0.38 1.03 16 43 H 0.08 0.95 5.42 -51.93 -0.28 0.67 16 44 H 0.18 1.95 8.06 -52.49 -0.42 1.52 16 45 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 46 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 47 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -33.33 394.33 -8.04 -41.37 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.80 Total: -2.86 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -1.39 Total: 10.82 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.56 Total: -54.56 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.20 Total: -17.45 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.33 -8.04 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689248766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.929 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds