Wall clock time and date at job start Wed Apr 1 2020 04:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 120.00003 * 2 1 4 4 H 1.07998 * 120.00248 * 204.67108 * 3 2 1 5 5 C 1.38816 * 120.00246 * 24.67351 * 3 2 1 6 6 N 1.31622 * 119.99639 * 6.71480 * 5 3 2 7 7 Si 1.86796 * 120.00082 * 186.71645 * 5 3 2 8 8 H 1.48500 * 109.47474 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47204 * 120.00173 * 7 5 3 10 10 H 1.48500 * 109.46949 * 239.99784 * 7 5 3 11 11 C 1.46496 * 119.99922 * 179.97438 * 2 1 3 12 12 C 1.53009 * 109.47129 * 270.00243 * 11 2 1 13 13 O 1.42899 * 109.47064 * 65.00248 * 12 11 2 14 14 C 1.42894 * 113.99979 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47059 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.47332 * 64.99659 * 15 14 13 17 17 C 1.46499 * 120.00004 * 270.00176 * 16 15 14 18 18 C 1.34782 * 119.99870 * 89.99939 * 16 15 14 19 19 O 1.21626 * 119.99752 * 3.39322 * 18 16 15 20 20 C 1.47164 * 119.99915 * 183.39541 * 18 16 15 21 21 C 1.35760 * 125.13056 * 172.65416 * 20 18 16 22 22 C 1.46417 * 106.13685 * 180.02562 * 21 20 18 23 23 N 1.32944 * 133.88389 * 179.32791 * 22 21 20 24 24 C 1.31441 * 121.38060 * 180.02562 * 23 22 21 25 25 C 1.38861 * 121.18645 * 0.02562 * 24 23 22 26 26 C 1.38211 * 119.71274 * 359.97438 * 25 24 23 27 27 C 1.39305 * 118.33206 * 0.26956 * 26 25 24 28 28 O 1.34581 * 133.42537 * 179.72333 * 27 26 25 29 29 H 1.08994 * 109.47202 * 275.05817 * 1 2 3 30 30 H 1.08997 * 109.46977 * 35.05892 * 1 2 3 31 31 H 1.09000 * 109.47141 * 155.05258 * 1 2 3 32 32 H 0.97003 * 119.99736 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.47284 * 150.00489 * 11 2 1 34 34 H 1.09002 * 109.47080 * 30.00375 * 11 2 1 35 35 H 1.08997 * 109.46785 * 304.99872 * 12 11 2 36 36 H 1.08995 * 109.46807 * 185.00218 * 12 11 2 37 37 H 1.08999 * 109.47286 * 59.99541 * 14 13 12 38 38 H 1.09002 * 109.46786 * 299.99501 * 14 13 12 39 39 H 1.08997 * 109.46936 * 304.99594 * 15 14 13 40 40 H 1.09002 * 109.47018 * 185.00108 * 15 14 13 41 41 H 1.09003 * 109.46762 * 263.84584 * 17 16 15 42 42 H 1.09000 * 109.47057 * 23.84077 * 17 16 15 43 43 H 1.08996 * 109.47278 * 143.84619 * 17 16 15 44 44 H 1.07994 * 126.92624 * 359.40259 * 21 20 18 45 45 H 1.07996 * 119.40640 * 180.02562 * 24 23 22 46 46 H 1.07999 * 120.14224 * 179.97438 * 25 24 23 47 47 H 1.07997 * 120.83928 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1557 1.2286 -0.3904 5 6 1.5507 2.3332 0.5018 6 7 0.3793 2.2574 1.0972 7 14 2.4072 3.9846 0.3322 8 1 3.7026 3.8006 -0.3700 9 1 1.5475 4.9102 -0.4484 10 1 2.6525 4.5558 1.6808 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4433 13 8 1.2060 -1.9927 2.0823 14 6 1.3322 -2.4150 3.4415 15 6 -0.0568 -2.6891 4.0216 16 7 -0.6647 -3.8216 3.3187 17 6 -1.4787 -3.5901 2.1229 18 6 -0.4751 -5.0766 3.7722 19 8 0.1488 -5.2642 4.7993 20 6 -1.0230 -6.2198 3.0247 21 6 -0.7778 -7.5255 3.3040 22 6 -1.5227 -8.3010 2.3102 23 7 -1.6616 -9.6014 2.0712 24 6 -2.4120 -10.0398 1.0851 25 6 -3.0905 -9.1602 0.2520 26 6 -2.9796 -7.7980 0.4580 27 6 -2.1760 -7.3509 1.5044 28 8 -1.8534 -6.1286 1.9660 29 1 -0.3633 0.0906 1.0236 30 1 -0.3633 0.8412 -0.5903 31 1 -0.3633 -0.9318 -0.4335 32 1 -0.0391 3.0591 1.4482 33 1 3.1500 -1.1386 -0.5133 34 1 1.6084 -2.0286 -0.5130 35 1 2.9642 -0.9123 1.9820 36 1 3.0732 -2.6057 1.4450 37 1 1.8205 -1.6318 4.0215 38 1 1.9299 -3.3255 3.4850 39 1 -0.6832 -1.8058 3.8973 40 1 0.0324 -2.9250 5.0820 41 1 -2.5320 -3.5559 2.4014 42 1 -1.1927 -2.6424 1.6666 43 1 -1.3172 -4.3996 1.4110 44 1 -0.1510 -7.9137 4.0931 45 1 -2.5025 -11.1032 0.9200 46 1 -3.7023 -9.5388 -0.5535 47 1 -3.4996 -7.0976 -0.1787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689248766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:52 Heat of formation + Delta-G solvation = -16.253302 kcal Electronic energy + Delta-G solvation = -30511.126085 eV Core-core repulsion = 26275.741415 eV Total energy + Delta-G solvation = -4235.384671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.86087 -41.08212 -39.83479 -39.00306 -37.32217 -36.55686 -34.29765 -33.47801 -32.63501 -31.98364 -30.75089 -29.61229 -27.79588 -27.71817 -26.15617 -24.80604 -24.46552 -23.83764 -22.62633 -22.12849 -21.23140 -19.33363 -18.76242 -18.67832 -17.94551 -17.73490 -17.50507 -17.21203 -16.96541 -16.56503 -16.47889 -16.30577 -15.41962 -15.31881 -15.21607 -14.82144 -14.66910 -14.44140 -14.38594 -14.20652 -14.07294 -13.93014 -13.60605 -13.51969 -13.23291 -12.99383 -12.91350 -12.73353 -12.61040 -12.43588 -12.25946 -11.98176 -11.79532 -11.69243 -11.67220 -11.57774 -10.61384 -10.53969 -10.40904 -10.18609 -9.99071 -9.67210 -8.68690 -7.76406 -5.26019 -0.68983 0.06614 0.60489 1.14654 1.46595 1.48112 1.57600 1.72380 1.87811 2.52934 2.67455 2.78702 2.87806 3.30811 3.36625 3.47122 3.73253 3.78150 3.92387 4.03476 4.05942 4.17397 4.26378 4.27825 4.39550 4.48798 4.50924 4.52823 4.58834 4.61795 4.65037 4.67506 4.78274 4.92701 4.95541 4.99836 5.03089 5.08131 5.16991 5.20509 5.35690 5.44055 5.69498 5.73987 5.90296 6.06127 6.38561 6.43142 6.69564 6.78509 7.22489 7.94238 8.39641 9.26018 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018356 B = 0.002294 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.020549 B =12201.691301 C =12907.818920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.613 5.613 3 C -0.260 4.260 4 H 0.069 0.931 5 C -0.052 4.052 6 N -0.933 5.933 7 Si 0.964 3.036 8 H -0.267 1.267 9 H -0.292 1.292 10 H -0.295 1.295 11 C 0.150 3.850 12 C 0.053 3.947 13 O -0.382 6.382 14 C 0.049 3.951 15 C 0.124 3.876 16 N -0.587 5.587 17 C 0.080 3.920 18 C 0.594 3.406 19 O -0.545 6.545 20 C -0.013 4.013 21 C -0.111 4.111 22 C 0.034 3.966 23 N -0.475 5.475 24 C 0.100 3.900 25 C -0.123 4.123 26 C -0.063 4.063 27 C -0.006 4.006 28 O -0.169 6.169 29 H 0.008 0.992 30 H 0.007 0.993 31 H 0.020 0.980 32 H 0.245 0.755 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.023 0.977 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.178 0.822 45 H 0.201 0.799 46 H 0.198 0.802 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.613 -23.575 -0.990 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.336 5.336 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.247 4.247 6 N -0.580 5.580 7 Si 0.793 3.207 8 H -0.191 1.191 9 H -0.219 1.219 10 H -0.222 1.222 11 C 0.024 3.976 12 C -0.027 4.027 13 O -0.301 6.301 14 C -0.029 4.029 15 C 0.002 3.998 16 N -0.317 5.317 17 C -0.061 4.061 18 C 0.382 3.618 19 O -0.426 6.426 20 C -0.064 4.064 21 C -0.133 4.133 22 C -0.094 4.094 23 N -0.185 5.185 24 C -0.066 4.066 25 C -0.142 4.142 26 C -0.090 4.090 27 C -0.056 4.056 28 O -0.070 6.070 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.195 0.805 45 H 0.218 0.782 46 H 0.215 0.785 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.190 -23.750 -0.051 25.123 hybrid contribution 0.425 1.777 0.037 1.827 sum -7.765 -21.973 -0.014 23.305 Atomic orbital electron populations 1.20388 0.82456 0.94642 0.97534 1.44074 1.02352 1.01234 1.85958 1.19558 0.99257 0.87191 1.33076 0.91289 1.25812 0.98297 1.01725 0.98853 1.70247 1.17702 1.27444 1.42591 0.85240 0.78272 0.80385 0.76770 1.19148 1.21948 1.22186 1.21057 0.96707 0.87308 0.92557 1.23221 0.85588 0.97175 0.96673 1.87903 1.30320 1.87453 1.24436 1.22849 0.97600 0.98082 0.84405 1.21660 0.93014 0.88261 0.96881 1.47764 1.49636 1.05174 1.29087 1.22120 0.94587 1.03654 0.85768 1.16914 0.79706 0.81590 0.83632 1.90846 1.42946 1.84609 1.24160 1.21782 0.98233 0.95190 0.91224 1.22627 1.00881 0.89936 0.99834 1.20688 1.00606 0.90603 0.97535 1.67048 1.17658 1.13853 1.19923 1.23623 0.91081 1.02830 0.89043 1.22638 0.99402 0.91174 1.00974 1.21078 0.96162 0.97667 0.94064 1.21191 1.01366 0.83508 0.99537 1.84306 1.54427 1.28508 1.39736 0.97321 0.97380 0.96140 0.94560 0.91368 0.92273 0.95860 0.93051 0.92674 0.93805 0.88561 0.87437 0.90802 0.90019 0.89892 0.80477 0.78193 0.78527 0.80747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.64 8.60 127.77 1.10 10.74 16 2 N -0.61 -30.53 2.89 -726.92 -2.10 -32.63 16 3 C -0.26 -14.17 9.66 84.03 0.81 -13.36 16 4 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 5 C -0.05 -2.89 5.22 84.86 0.44 -2.45 16 6 N -0.93 -54.83 10.49 21.65 0.23 -54.60 16 7 Si 0.96 45.01 29.56 68.60 2.03 47.04 16 8 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 9 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 11 C 0.15 5.97 6.11 86.38 0.53 6.50 16 12 C 0.05 1.96 6.28 71.99 0.45 2.42 16 13 O -0.38 -14.25 8.84 -148.98 -1.32 -15.57 16 14 C 0.05 1.53 6.28 71.98 0.45 1.98 16 15 C 0.12 3.45 5.81 86.38 0.50 3.95 16 16 N -0.59 -16.07 2.84 -850.96 -2.41 -18.48 16 17 C 0.08 1.97 9.35 127.77 1.19 3.16 16 18 C 0.59 17.19 7.65 86.59 0.66 17.85 16 19 O -0.55 -18.14 16.40 -4.11 -0.07 -18.21 16 20 C -0.01 -0.33 6.73 24.04 0.16 -0.17 16 21 C -0.11 -2.82 10.82 23.83 0.26 -2.56 16 22 C 0.03 0.81 7.52 41.70 0.31 1.12 16 23 N -0.47 -10.16 10.41 -185.13 -1.93 -12.09 16 24 C 0.10 1.20 11.17 84.90 0.95 2.15 16 25 C -0.12 -0.96 10.09 22.41 0.23 -0.74 16 26 C -0.06 -0.80 10.19 22.52 0.23 -0.57 16 27 C -0.01 -0.12 7.42 23.12 0.17 0.05 16 28 O -0.17 -3.96 7.15 -10.83 -0.08 -4.03 16 29 H 0.01 0.46 7.34 -2.39 -0.02 0.44 16 30 H 0.01 0.41 7.28 -2.39 -0.02 0.39 16 31 H 0.02 0.87 7.84 -2.39 -0.02 0.85 16 32 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 33 H 0.07 2.54 8.04 -2.38 -0.02 2.52 16 34 H 0.06 2.15 7.86 -2.39 -0.02 2.13 16 35 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 2.70 8.07 -2.39 -0.02 2.68 16 40 H 0.11 2.79 7.38 -2.39 -0.02 2.77 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 2.31 7.25 -2.39 -0.02 2.30 16 43 H 0.08 1.97 5.42 -2.39 -0.01 1.95 16 44 H 0.18 4.18 8.06 -2.91 -0.02 4.16 16 45 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 46 H 0.20 -0.26 8.06 -2.91 -0.02 -0.28 16 47 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -73.49 394.33 3.78 -69.71 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.98 Total: 8.78 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 8.45 Total: 30.09 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -6.21 Total: -117.81 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -1.46 Total: -37.81 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.49 3.78 -69.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689248766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.453 kcal (2) G-P(sol) polarization free energy of solvation -73.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds