Wall clock time and date at job start Wed Apr 1 2020 05:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35708 * 116.99986 * 2 1 4 4 C 1.38999 * 119.91286 * 180.02562 * 3 2 1 5 5 C 1.37699 * 120.08911 * 180.02562 * 4 3 2 6 6 C 1.39726 * 119.91382 * 359.97438 * 5 4 3 7 7 C 1.47609 * 120.08984 * 180.02562 * 6 5 4 8 8 O 1.21582 * 119.99805 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99807 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99658 * 179.97438 * 9 7 6 11 11 H 1.08993 * 110.64481 * 323.30201 * 10 9 7 12 12 C 1.54600 * 110.72252 * 86.45429 * 10 9 7 13 13 C 1.53994 * 105.14079 * 140.31268 * 12 10 9 14 14 N 1.47901 * 107.05483 * 1.22496 * 13 12 10 15 15 C 1.46906 * 110.99930 * 214.15316 * 14 13 12 16 16 C 1.50692 * 109.47142 * 176.64096 * 15 14 13 17 17 O 1.21293 * 120.00556 * 6.13526 * 16 15 14 18 18 N 1.34776 * 119.99831 * 186.13508 * 16 15 14 19 19 C 1.37101 * 120.00231 * 179.72332 * 18 16 15 20 20 H 1.08005 * 119.99897 * 0.27309 * 19 18 16 21 21 C 1.38949 * 120.00349 * 180.27930 * 19 18 16 22 22 N 1.31411 * 120.00101 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99852 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47160 * 59.99807 * 23 21 19 25 25 H 1.48499 * 109.46955 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47041 * 299.99512 * 23 21 19 27 27 C 1.48530 * 105.82267 * 334.66664 * 14 13 12 28 28 C 1.39735 * 119.82546 * 0.27330 * 6 5 4 29 29 C 1.37703 * 119.90615 * 359.45116 * 28 6 5 30 30 H 1.09002 * 109.46537 * 299.99316 * 1 2 3 31 31 H 1.08994 * 109.47205 * 59.98988 * 1 2 3 32 32 H 1.09000 * 109.46988 * 180.02562 * 1 2 3 33 33 H 1.08005 * 119.95371 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.04219 * 179.97438 * 5 4 3 35 35 H 0.96999 * 120.00112 * 359.97438 * 9 7 6 36 36 H 1.09004 * 110.31015 * 21.39776 * 12 10 9 37 37 H 1.09003 * 110.30580 * 259.23266 * 12 10 9 38 38 H 1.08999 * 109.91719 * 241.87327 * 13 12 10 39 39 H 1.08997 * 109.91115 * 120.57337 * 13 12 10 40 40 H 1.09000 * 109.46979 * 56.63543 * 15 14 13 41 41 H 1.09002 * 109.46915 * 296.64168 * 15 14 13 42 42 H 0.97005 * 120.00053 * 0.02562 * 18 16 15 43 43 H 0.96999 * 120.00176 * 180.02562 * 22 21 19 44 44 H 1.09006 * 110.66713 * 157.64078 * 27 14 13 45 45 H 1.08998 * 110.67080 * 280.77302 * 27 14 13 46 46 H 1.07999 * 120.04728 * 179.72230 * 28 6 5 47 47 H 1.08005 * 119.95734 * 180.25399 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4333 1.2798 -0.0005 5 6 4.0622 2.5048 0.0000 6 6 3.3031 3.6778 0.0005 7 6 3.9732 4.9930 0.0005 8 8 5.1874 5.0566 0.0005 9 7 3.2391 6.1233 0.0016 10 6 3.9043 7.4287 0.0021 11 1 4.8076 7.3994 0.6113 12 6 4.2317 7.8764 -1.4409 13 6 3.9363 9.3875 -1.4700 14 7 3.4981 9.7701 -0.1102 15 6 2.4870 10.8346 -0.1629 16 6 2.0056 11.1397 1.2320 17 8 2.5370 10.6118 2.1861 18 7 0.9846 11.9991 1.4196 19 6 0.5428 12.2724 2.6884 20 1 1.0159 11.8023 3.5379 21 6 -0.5137 13.1540 2.8815 22 7 -1.0892 13.7263 1.8479 23 14 -1.1150 13.5268 4.6103 24 1 -0.0065 14.1159 5.4037 25 1 -2.2429 14.4905 4.5450 26 1 -1.5733 12.2709 5.2565 27 6 2.9397 8.5353 0.4977 28 6 1.9078 3.6026 0.0063 29 6 1.2864 2.3738 0.0000 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 4.0195 0.3726 -0.0005 34 1 5.1409 2.5588 0.0000 35 1 2.2705 6.0726 0.0020 36 1 3.5944 7.3526 -2.1534 37 1 5.2824 7.6919 -1.6650 38 1 3.1437 9.5972 -2.1883 39 1 4.8387 9.9371 -1.7377 40 1 1.6460 10.5069 -0.7741 41 1 2.9261 11.7314 -0.6001 42 1 0.5593 12.4210 0.6566 43 1 -1.8264 14.3421 1.9827 44 1 2.9560 8.6008 1.5857 45 1 1.9273 8.3529 0.1374 46 1 1.3175 4.5070 0.0113 47 1 0.2079 2.3147 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690109701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:17 Heat of formation + Delta-G solvation = -67.347776 kcal Electronic energy + Delta-G solvation = -29344.200294 eV Core-core repulsion = 25106.600000 eV Total energy + Delta-G solvation = -4237.600293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.80551 -39.94042 -38.94510 -37.66197 -37.13126 -34.55248 -33.88662 -31.86255 -31.32921 -31.06091 -30.36777 -28.47058 -27.73982 -26.50209 -24.29828 -23.75501 -22.89632 -21.29258 -21.11176 -20.22201 -19.20746 -18.79658 -17.91271 -17.77307 -16.91083 -16.31468 -16.23568 -15.97514 -15.40464 -15.33492 -14.85251 -14.75120 -14.55983 -14.30541 -14.07737 -14.00947 -13.79353 -13.56230 -13.25470 -13.02214 -12.94193 -12.74854 -12.36875 -12.33388 -11.91729 -11.75533 -11.53732 -11.48220 -11.33523 -11.26967 -11.18649 -10.89345 -10.62658 -10.46345 -10.24253 -10.05553 -9.51106 -9.49046 -9.17076 -8.64158 -8.46408 -8.06940 -7.96460 -6.44704 -3.85611 0.57507 0.92841 2.65252 2.75518 2.97978 3.17680 3.23789 3.28113 3.55906 3.86727 4.05006 4.25052 4.26946 4.41206 4.50479 4.60052 4.67483 4.71643 4.79564 4.84015 4.97640 5.01542 5.04543 5.14598 5.21501 5.22454 5.36973 5.42781 5.53950 5.65025 5.70848 5.78309 5.83217 5.88461 5.89689 5.98629 6.06982 6.11769 6.23485 6.23677 6.40504 6.46876 6.86329 7.10963 7.18368 7.39432 7.52180 8.02741 8.10707 8.58313 9.14871 9.50756 10.02434 10.72874 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.002064 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.434586 B =13564.036766 C =15286.840258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.151 3.849 4 C -0.161 4.161 5 C -0.019 4.019 6 C -0.172 4.172 7 C 0.563 3.437 8 O -0.538 6.538 9 N -0.717 5.717 10 C 0.141 3.859 11 H 0.104 0.896 12 C -0.139 4.139 13 C 0.034 3.966 14 N -0.490 5.490 15 C 0.038 3.962 16 C 0.441 3.559 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.036 3.964 28 C -0.043 4.043 29 C -0.217 4.217 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.398 0.602 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.114 0.886 45 H 0.041 0.959 46 H 0.130 0.870 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.858 -23.011 -9.751 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.105 3.895 4 C -0.180 4.180 5 C -0.038 4.038 6 C -0.176 4.176 7 C 0.351 3.649 8 O -0.416 6.416 9 N -0.369 5.369 10 C 0.036 3.964 11 H 0.122 0.878 12 C -0.178 4.178 13 C -0.094 4.094 14 N -0.214 5.214 15 C -0.094 4.094 16 C 0.226 3.774 17 O -0.462 6.462 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.092 4.092 28 C -0.062 4.062 29 C -0.235 4.235 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.234 0.766 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.132 0.868 45 H 0.059 0.941 46 H 0.148 0.852 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.427 -23.124 -8.801 24.979 hybrid contribution -2.270 0.482 -0.247 2.334 sum 1.157 -22.642 -9.048 24.411 Atomic orbital electron populations 1.23142 0.77856 1.04311 1.01758 1.86049 1.21863 1.26886 1.87902 1.19324 0.92461 0.84241 0.93470 1.20424 0.91234 0.98792 1.07522 1.21095 1.00813 0.89879 0.91995 1.19881 0.93592 0.93749 1.10353 1.18125 0.86917 0.83825 0.76039 1.90778 1.13439 1.87460 1.49907 1.45919 1.10114 1.05624 1.75206 1.21975 0.97133 0.80791 0.96551 0.87756 1.22801 1.02674 0.95350 0.97017 1.22924 1.00760 0.95042 0.90697 1.64487 1.35172 1.06115 1.15624 1.22099 0.93819 0.96237 0.97221 1.19708 0.83534 0.84321 0.89799 1.90495 1.58869 1.54456 1.42413 1.41861 1.29578 1.39221 1.09274 1.19650 1.13991 1.24178 0.85067 0.87940 1.25264 0.96702 0.96561 0.99400 1.69602 1.24455 1.30114 1.30131 0.85918 0.78225 0.78292 0.81795 1.19845 1.20982 1.19933 1.23537 0.94643 0.87657 1.03345 1.21126 0.93359 0.97610 0.94087 1.21187 1.00451 0.91995 1.09902 0.92241 0.92303 0.87966 0.84424 0.83800 0.76632 0.91350 0.90446 0.93729 0.90073 0.93398 0.88909 0.77485 0.91804 0.86789 0.94065 0.85189 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.52 10.48 -18.83 -0.20 -2.72 16 3 C 0.15 1.32 6.70 -39.02 -0.26 1.06 16 4 C -0.16 -1.42 9.97 -39.50 -0.39 -1.81 16 5 C -0.02 -0.19 9.58 -39.22 -0.38 -0.56 16 6 C -0.17 -1.83 5.87 -104.96 -0.62 -2.45 16 7 C 0.56 7.28 7.76 -12.44 -0.10 7.18 16 8 O -0.54 -8.72 16.06 5.29 0.09 -8.64 16 9 N -0.72 -8.36 5.09 -53.02 -0.27 -8.63 16 10 C 0.14 1.91 3.35 -66.06 -0.22 1.69 16 11 H 0.10 1.64 7.69 -51.93 -0.40 1.24 16 12 C -0.14 -1.69 6.67 -25.37 -0.17 -1.86 16 13 C 0.03 0.44 6.70 -2.75 -0.02 0.42 16 14 N -0.49 -8.08 5.11 -231.89 -1.18 -9.26 16 15 C 0.04 0.66 5.30 -4.98 -0.03 0.64 16 16 C 0.44 10.16 7.41 -10.99 -0.08 10.08 16 17 O -0.58 -15.19 13.87 5.55 0.08 -15.11 16 18 N -0.56 -13.96 5.29 -10.96 -0.06 -14.02 16 19 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 20 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 23 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.04 0.57 5.19 -1.90 -0.01 0.56 16 28 C -0.04 -0.37 9.53 -39.22 -0.37 -0.74 16 29 C -0.22 -1.70 9.01 -39.50 -0.36 -2.05 16 30 H 0.06 0.22 7.65 -51.93 -0.40 -0.17 16 31 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 34 H 0.14 1.39 7.64 -52.49 -0.40 0.99 16 35 H 0.40 3.71 6.55 -40.82 -0.27 3.44 16 36 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.04 0.52 7.68 -51.93 -0.40 0.12 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 41 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.11 2.18 6.43 -51.93 -0.33 1.85 16 45 H 0.04 0.61 7.88 -51.93 -0.41 0.20 16 46 H 0.13 0.85 6.39 -52.49 -0.34 0.51 16 47 H 0.13 0.75 6.28 -52.48 -0.33 0.42 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -33.51 389.74 -8.67 -42.18 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.45 Total: 12.59 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -2.25 Total: 5.40 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.79 Total: -55.35 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.04 Total: -26.47 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.51 -8.67 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690109701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.163 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds