Wall clock time and date at job start Wed Apr 1 2020 05:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35708 * 116.99986 * 2 1 4 4 C 1.38999 * 119.91286 * 180.02562 * 3 2 1 5 5 C 1.37699 * 120.08911 * 180.02562 * 4 3 2 6 6 C 1.39726 * 119.91382 * 359.97438 * 5 4 3 7 7 C 1.47609 * 120.08984 * 180.02562 * 6 5 4 8 8 O 1.21582 * 119.99805 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99807 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99658 * 179.97438 * 9 7 6 11 11 H 1.08993 * 110.64481 * 323.30201 * 10 9 7 12 12 C 1.54600 * 110.72252 * 86.45429 * 10 9 7 13 13 C 1.53994 * 105.14079 * 140.31268 * 12 10 9 14 14 N 1.47901 * 107.05483 * 1.22496 * 13 12 10 15 15 C 1.46906 * 110.99930 * 214.15316 * 14 13 12 16 16 C 1.50692 * 109.47142 * 176.64096 * 15 14 13 17 17 O 1.21293 * 120.00556 * 6.13526 * 16 15 14 18 18 N 1.34776 * 119.99831 * 186.13508 * 16 15 14 19 19 C 1.37101 * 120.00231 * 179.72332 * 18 16 15 20 20 H 1.08005 * 119.99897 * 0.27309 * 19 18 16 21 21 C 1.38949 * 120.00349 * 180.27930 * 19 18 16 22 22 N 1.31411 * 120.00101 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99852 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47160 * 59.99807 * 23 21 19 25 25 H 1.48499 * 109.46955 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47041 * 299.99512 * 23 21 19 27 27 C 1.48530 * 105.82267 * 334.66664 * 14 13 12 28 28 C 1.39735 * 119.82546 * 0.27330 * 6 5 4 29 29 C 1.37703 * 119.90615 * 359.45116 * 28 6 5 30 30 H 1.09002 * 109.46537 * 299.99316 * 1 2 3 31 31 H 1.08994 * 109.47205 * 59.98988 * 1 2 3 32 32 H 1.09000 * 109.46988 * 180.02562 * 1 2 3 33 33 H 1.08005 * 119.95371 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.04219 * 179.97438 * 5 4 3 35 35 H 0.96999 * 120.00112 * 359.97438 * 9 7 6 36 36 H 1.09004 * 110.31015 * 21.39776 * 12 10 9 37 37 H 1.09003 * 110.30580 * 259.23266 * 12 10 9 38 38 H 1.08999 * 109.91719 * 241.87327 * 13 12 10 39 39 H 1.08997 * 109.91115 * 120.57337 * 13 12 10 40 40 H 1.09000 * 109.46979 * 56.63543 * 15 14 13 41 41 H 1.09002 * 109.46915 * 296.64168 * 15 14 13 42 42 H 0.97005 * 120.00053 * 0.02562 * 18 16 15 43 43 H 0.96999 * 120.00176 * 180.02562 * 22 21 19 44 44 H 1.09006 * 110.66713 * 157.64078 * 27 14 13 45 45 H 1.08998 * 110.67080 * 280.77302 * 27 14 13 46 46 H 1.07999 * 120.04728 * 179.72230 * 28 6 5 47 47 H 1.08005 * 119.95734 * 180.25399 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4333 1.2798 -0.0005 5 6 4.0622 2.5048 0.0000 6 6 3.3031 3.6778 0.0005 7 6 3.9732 4.9930 0.0005 8 8 5.1874 5.0566 0.0005 9 7 3.2391 6.1233 0.0016 10 6 3.9043 7.4287 0.0021 11 1 4.8076 7.3994 0.6113 12 6 4.2317 7.8764 -1.4409 13 6 3.9363 9.3875 -1.4700 14 7 3.4981 9.7701 -0.1102 15 6 2.4870 10.8346 -0.1629 16 6 2.0056 11.1397 1.2320 17 8 2.5370 10.6118 2.1861 18 7 0.9846 11.9991 1.4196 19 6 0.5428 12.2724 2.6884 20 1 1.0159 11.8023 3.5379 21 6 -0.5137 13.1540 2.8815 22 7 -1.0892 13.7263 1.8479 23 14 -1.1150 13.5268 4.6103 24 1 -0.0065 14.1159 5.4037 25 1 -2.2429 14.4905 4.5450 26 1 -1.5733 12.2709 5.2565 27 6 2.9397 8.5353 0.4977 28 6 1.9078 3.6026 0.0063 29 6 1.2864 2.3738 0.0000 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 4.0195 0.3726 -0.0005 34 1 5.1409 2.5588 0.0000 35 1 2.2705 6.0726 0.0020 36 1 3.5944 7.3526 -2.1534 37 1 5.2824 7.6919 -1.6650 38 1 3.1437 9.5972 -2.1883 39 1 4.8387 9.9371 -1.7377 40 1 1.6460 10.5069 -0.7741 41 1 2.9261 11.7314 -0.6001 42 1 0.5593 12.4210 0.6566 43 1 -1.8264 14.3421 1.9827 44 1 2.9560 8.6008 1.5857 45 1 1.9273 8.3529 0.1374 46 1 1.3175 4.5070 0.0113 47 1 0.2079 2.3147 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690109701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:16 Heat of formation + Delta-G solvation = -92.622531 kcal Electronic energy + Delta-G solvation = -29345.296289 eV Core-core repulsion = 25106.600000 eV Total energy + Delta-G solvation = -4238.696289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.60625 -40.90433 -40.28579 -39.04063 -37.98855 -36.02150 -35.52125 -33.31584 -32.69211 -31.97901 -31.23543 -29.50697 -28.42157 -27.91988 -25.99859 -24.59068 -23.59929 -22.50752 -22.02789 -21.29820 -20.94146 -19.85782 -19.45988 -18.62544 -17.89000 -17.71015 -16.97619 -16.75518 -16.71158 -16.46335 -16.23188 -15.99523 -15.77075 -15.73129 -15.35369 -14.86783 -14.75590 -14.65070 -14.34014 -14.18755 -13.85506 -13.66240 -13.59259 -13.53890 -13.18986 -12.94576 -12.83471 -12.80318 -12.48529 -12.41918 -12.32153 -12.11246 -12.05257 -11.87321 -11.70111 -11.46049 -11.10414 -10.29345 -10.18694 -10.15260 -9.99654 -9.34631 -9.32134 -8.45821 -5.94071 -0.17521 0.27343 1.39726 1.42253 1.52586 1.77490 1.98100 2.05703 2.26111 2.29293 2.78682 2.87926 3.21249 3.38344 3.46748 3.67332 3.75704 3.78248 3.83776 4.05250 4.13711 4.24100 4.28342 4.31160 4.35486 4.40209 4.42864 4.45295 4.55038 4.57268 4.70247 4.75118 4.88281 4.91845 4.93916 5.04908 5.08097 5.16201 5.18314 5.29565 5.38581 5.42016 5.58526 5.82509 5.93506 6.09233 6.30488 6.45956 6.61662 7.13779 7.13997 7.57225 8.13192 8.71249 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.002064 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.434586 B =13564.036766 C =15286.840258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.150 3.850 4 C -0.168 4.168 5 C -0.028 4.028 6 C -0.192 4.192 7 C 0.563 3.437 8 O -0.579 6.579 9 N -0.707 5.707 10 C 0.148 3.852 11 H 0.076 0.924 12 C -0.129 4.129 13 C 0.038 3.962 14 N -0.514 5.514 15 C 0.051 3.949 16 C 0.439 3.561 17 O -0.615 6.615 18 N -0.572 5.572 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.043 3.957 28 C -0.039 4.039 29 C -0.215 4.215 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.150 0.850 34 H 0.137 0.863 35 H 0.411 0.589 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.151 0.849 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -23.764 -11.096 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.103 3.897 4 C -0.186 4.186 5 C -0.047 4.047 6 C -0.196 4.196 7 C 0.352 3.648 8 O -0.460 6.460 9 N -0.359 5.359 10 C 0.043 3.957 11 H 0.095 0.905 12 C -0.168 4.168 13 C -0.089 4.089 14 N -0.239 5.239 15 C -0.081 4.081 16 C 0.226 3.774 17 O -0.501 6.501 18 N -0.210 5.210 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.085 4.085 28 C -0.058 4.058 29 C -0.233 4.233 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.249 0.751 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.168 0.832 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.571 -23.881 -10.177 26.006 hybrid contribution -1.713 0.607 0.175 1.826 sum -0.142 -23.274 -10.002 25.332 Atomic orbital electron populations 1.23448 0.75933 1.05947 1.02704 1.86042 1.23890 1.26554 1.87557 1.19492 0.92558 0.84958 0.92663 1.20560 0.91866 0.98739 1.07438 1.21113 1.00687 0.90355 0.92511 1.19781 0.94625 0.92476 1.12687 1.18500 0.86500 0.84718 0.75061 1.90751 1.15232 1.88042 1.52009 1.45777 1.10722 1.04702 1.74690 1.21685 0.95635 0.81131 0.97298 0.90534 1.22736 1.03038 0.95156 0.95884 1.22981 1.01760 0.95252 0.88924 1.64418 1.35046 1.06192 1.18289 1.21985 0.95102 0.97632 0.93356 1.20734 0.82167 0.82583 0.91880 1.90485 1.59713 1.55364 1.44581 1.41916 1.30410 1.40040 1.08607 1.19597 1.15231 1.25547 0.85696 0.90373 1.26001 0.96279 0.95858 1.03078 1.69659 1.24628 1.30169 1.31589 0.85024 0.77862 0.78277 0.77401 1.19951 1.19527 1.19634 1.23301 0.95857 0.88419 1.00962 1.21334 0.92467 0.98883 0.93096 1.21468 1.01768 0.91232 1.08855 0.91408 0.91144 0.86186 0.83227 0.84478 0.75089 0.89523 0.90554 0.91456 0.89154 0.90719 0.86953 0.76975 0.91319 0.90940 0.92732 0.83194 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.63 10.48 -90.28 -0.95 -5.57 16 3 C 0.15 2.37 6.70 22.63 0.15 2.52 16 4 C -0.17 -2.85 9.97 22.32 0.22 -2.62 16 5 C -0.03 -0.56 9.58 22.50 0.22 -0.34 16 6 C -0.19 -4.03 5.87 -20.08 -0.12 -4.15 16 7 C 0.56 14.70 7.76 86.72 0.67 15.37 16 8 O -0.58 -19.52 16.06 -3.97 -0.06 -19.59 16 9 N -0.71 -16.16 5.09 -439.91 -2.24 -18.40 16 10 C 0.15 4.04 3.35 46.20 0.15 4.19 16 11 H 0.08 2.53 7.69 -2.39 -0.02 2.51 16 12 C -0.13 -2.91 6.67 31.47 0.21 -2.70 16 13 C 0.04 0.88 6.70 86.45 0.58 1.46 16 14 N -0.51 -16.43 5.11 -887.58 -4.54 -20.96 16 15 C 0.05 1.68 5.30 85.55 0.45 2.14 16 16 C 0.44 20.37 7.41 87.65 0.65 21.02 16 17 O -0.62 -33.36 13.87 -3.07 -0.04 -33.40 16 18 N -0.57 -28.66 5.29 -306.99 -1.62 -30.28 16 19 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 22 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 23 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 C 0.04 1.36 5.19 86.65 0.45 1.81 16 28 C -0.04 -0.60 9.53 22.51 0.21 -0.39 16 29 C -0.21 -2.87 9.01 22.33 0.20 -2.67 16 30 H 0.07 0.32 7.65 -2.39 -0.02 0.30 16 31 H 0.07 0.29 7.65 -2.39 -0.02 0.27 16 32 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.14 2.83 7.64 -2.91 -0.02 2.81 16 35 H 0.41 7.10 6.55 -92.71 -0.61 6.49 16 36 H 0.09 1.66 8.05 -2.38 -0.02 1.64 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 1.29 7.68 -2.39 -0.02 1.27 16 39 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.12 7.98 -2.39 -0.02 2.10 16 41 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.40 18.78 7.90 -92.70 -0.73 18.05 16 43 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 44 H 0.07 2.91 6.43 -2.38 -0.02 2.89 16 45 H 0.05 1.54 7.88 -2.39 -0.02 1.52 16 46 H 0.15 1.59 6.39 -2.91 -0.02 1.57 16 47 H 0.16 1.24 6.28 -2.91 -0.02 1.22 16 Total: -1.00 -74.54 389.74 -1.01 -75.54 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.32 Total: 37.73 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 6.45 Total: 18.99 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -8.12 Total: -118.13 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -1.05 Total: -58.56 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -74.54 -1.01 -75.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690109701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.079 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds