Wall clock time and date at job start Wed Apr 1 2020 05:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35672 * 116.99657 * 2 1 4 4 C 1.38921 * 119.68220 * 180.29887 * 3 2 1 5 5 C 1.38380 * 119.11204 * 180.24507 * 4 3 2 6 6 C 1.50700 * 120.75836 * 179.73346 * 5 4 3 7 7 O 1.42900 * 109.46789 * 269.72245 * 6 5 4 8 8 C 1.42911 * 113.99864 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47152 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00203 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00015 * 179.97438 * 9 8 7 12 12 C 1.47868 * 126.94634 * 359.97438 * 11 9 8 13 13 C 1.56013 * 105.10936 * 182.01879 * 12 11 9 14 14 H 1.08997 * 116.25133 * 158.83332 * 13 12 11 15 15 C 1.57091 * 99.60601 * 32.80348 * 13 12 11 16 16 C 1.49295 * 126.94790 * 179.97438 * 11 9 8 17 17 H 1.09004 * 116.15118 * 16.68177 * 16 11 9 18 18 C 1.56017 * 104.09436 * 246.67961 * 16 11 9 19 19 N 1.47868 * 105.10479 * 288.76495 * 18 16 11 20 20 C 1.36942 * 126.94488 * 181.99959 * 19 18 16 21 21 H 1.07993 * 120.00094 * 173.67052 * 20 19 18 22 22 C 1.38815 * 119.99717 * 353.66540 * 20 19 18 23 23 N 1.31615 * 120.00247 * 6.42273 * 22 20 19 24 24 Si 1.86804 * 119.99820 * 186.41666 * 22 20 19 25 25 H 1.48500 * 109.46930 * 94.98834 * 24 22 20 26 26 H 1.48497 * 109.47003 * 214.98829 * 24 22 20 27 27 H 1.48501 * 109.47026 * 334.98999 * 24 22 20 28 28 C 1.38829 * 118.48075 * 359.46608 * 5 4 3 29 29 C 1.38048 * 119.29497 * 0.26946 * 28 5 4 30 30 N 1.31967 * 120.82742 * 359.97438 * 29 28 5 31 31 H 1.09001 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47212 * 299.99611 * 1 2 3 33 33 H 1.08996 * 109.47406 * 60.00482 * 1 2 3 34 34 H 1.08004 * 120.44626 * 359.97438 * 4 3 2 35 35 H 1.08996 * 109.47144 * 149.72866 * 6 5 4 36 36 H 1.08994 * 109.47195 * 29.72050 * 6 5 4 37 37 H 1.08997 * 109.46874 * 60.00388 * 8 7 6 38 38 H 1.08996 * 109.46511 * 300.00416 * 8 7 6 39 39 H 1.09000 * 110.31236 * 300.92872 * 12 11 9 40 40 H 1.09005 * 110.31287 * 63.11112 * 12 11 9 41 41 H 1.09000 * 112.36810 * 191.71506 * 15 13 12 42 42 H 1.09004 * 112.44189 * 64.29694 * 15 13 12 43 43 H 1.09002 * 110.31790 * 47.67223 * 18 16 11 44 44 H 1.08996 * 110.31478 * 169.85559 * 18 16 11 45 45 H 0.97000 * 120.00389 * 179.97438 * 23 22 20 46 46 H 1.08003 * 120.35047 * 180.25054 * 28 5 4 47 47 H 1.07991 * 119.58390 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0063 5 6 4.0485 2.5132 -0.0011 6 6 5.5512 2.6270 -0.0016 7 8 6.0265 2.6633 1.3456 8 6 7.4471 2.7715 1.4580 9 6 7.8350 2.8005 2.9139 10 8 6.9794 2.7345 3.7709 11 7 9.1328 2.8987 3.2636 12 6 10.2945 2.9864 2.3529 13 6 11.5424 3.0278 3.2884 14 1 12.4919 2.7377 2.8387 15 6 11.0188 2.1265 4.4638 16 6 9.6883 2.9410 4.6487 17 1 9.0211 2.6090 5.4442 18 6 10.2790 4.3793 4.7774 19 7 11.4811 4.3806 3.9164 20 6 12.3605 5.4141 3.7322 21 1 13.2605 5.2609 3.1554 22 6 12.0948 6.6586 4.2867 23 7 11.0660 6.8139 5.0928 24 14 13.1975 8.1130 3.8889 25 1 12.6129 8.8838 2.7623 26 1 13.3105 8.9894 5.0824 27 1 14.5456 7.6219 3.5059 28 6 3.2504 3.6491 -0.0010 29 6 1.8770 3.5097 -0.0005 30 7 1.3186 2.3140 -0.0006 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 4.0229 0.3695 -0.0108 35 1 5.8461 3.5417 -0.5156 36 1 5.9805 1.7669 -0.5152 37 1 7.7809 3.6894 0.9743 38 1 7.9160 1.9146 0.9743 39 1 10.3353 2.1100 1.7061 40 1 10.2391 3.8965 1.7555 41 1 11.6614 2.1766 5.3428 42 1 10.8361 1.0986 4.1503 43 1 9.5591 5.1172 4.4234 44 1 10.5542 4.5841 5.8120 45 1 10.8805 7.6834 5.4806 46 1 3.6993 4.6314 -0.0011 47 1 1.2517 4.3902 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692369170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:32 Heat of formation + Delta-G solvation = -9.176468 kcal Electronic energy + Delta-G solvation = -29818.683261 eV Core-core repulsion = 25583.605465 eV Total energy + Delta-G solvation = -4235.077796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.89729 -40.12036 -38.68963 -38.06697 -37.02725 -33.66712 -33.41417 -31.69203 -31.00100 -29.46344 -28.66225 -28.22400 -27.41999 -26.10186 -25.22542 -23.69985 -23.42506 -22.03029 -20.73666 -19.89289 -18.60997 -18.25949 -17.48411 -17.25267 -16.85809 -16.34348 -16.25191 -16.09418 -16.08296 -15.57550 -15.11787 -14.69027 -14.54752 -14.23777 -14.00922 -13.68317 -13.56865 -13.24085 -13.10908 -12.53063 -12.28299 -12.19351 -11.98434 -11.88369 -11.83422 -11.66194 -11.47044 -11.38298 -11.05457 -10.91132 -10.82516 -10.63677 -10.29595 -10.11072 -10.09265 -9.93549 -9.88411 -9.69334 -9.38831 -8.76391 -8.72556 -8.05104 -6.96668 -5.82064 -3.16268 0.82382 0.95780 2.76344 2.92810 3.00232 3.34129 3.39042 3.42172 3.50117 3.94349 4.08117 4.37883 4.47109 4.61416 4.78810 4.82394 4.85653 4.98311 5.01610 5.02925 5.11651 5.13546 5.13747 5.15522 5.22511 5.33855 5.35283 5.46660 5.51904 5.58692 5.62173 5.72736 5.86089 6.03280 6.11310 6.12466 6.23051 6.36445 6.42004 6.54943 6.61279 6.88463 6.95685 7.36549 7.48031 7.56875 7.68422 8.02171 8.06382 8.56364 9.05470 9.66716 10.36040 11.30309 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018769 B = 0.001996 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.468553 B =14025.693589 C =14761.498327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.316 3.684 4 C -0.167 4.167 5 C -0.008 4.008 6 C 0.099 3.901 7 O -0.355 6.355 8 C 0.050 3.950 9 C 0.529 3.471 10 O -0.534 6.534 11 N -0.607 5.607 12 C 0.080 3.920 13 C 0.142 3.858 14 H 0.107 0.893 15 C -0.153 4.153 16 C 0.101 3.899 17 H 0.114 0.886 18 C 0.174 3.826 19 N -0.597 5.597 20 C -0.234 4.234 21 H 0.081 0.919 22 C -0.004 4.004 23 N -0.916 5.916 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C -0.186 4.186 29 C 0.137 3.863 30 N -0.538 5.538 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.143 0.857 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.255 0.745 46 H 0.141 0.859 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.226 -11.917 -13.265 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.138 3.862 4 C -0.188 4.188 5 C -0.016 4.016 6 C 0.023 3.977 7 O -0.273 6.273 8 C -0.029 4.029 9 C 0.316 3.684 10 O -0.411 6.411 11 N -0.342 5.342 12 C -0.045 4.045 13 C 0.033 3.967 14 H 0.125 0.875 15 C -0.192 4.192 16 C -0.001 4.001 17 H 0.132 0.868 18 C 0.049 3.951 19 N -0.321 5.321 20 C -0.362 4.362 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.562 5.562 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.207 4.207 29 C -0.018 4.018 30 N -0.263 5.263 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.161 0.839 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.159 0.841 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.674 -12.029 -12.594 22.774 hybrid contribution 1.299 1.166 -0.480 1.810 sum -13.375 -10.863 -13.075 21.630 Atomic orbital electron populations 1.22853 0.77201 1.02922 1.02456 1.86239 1.22938 1.24495 1.87906 1.19756 0.89208 0.84747 0.92538 1.20947 0.92040 0.99093 1.06699 1.19741 0.94979 0.92373 0.94472 1.21333 0.89472 1.01845 0.85085 1.88085 1.19922 1.95035 1.24219 1.22219 0.82551 1.02430 0.95747 1.19615 0.81437 0.77418 0.89927 1.90703 1.48517 1.50126 1.51781 1.49140 1.04401 1.71330 1.09365 1.23354 0.87628 1.00054 0.93471 1.23150 0.94495 0.87328 0.91752 0.87517 1.24188 0.97037 0.97301 1.00696 1.24362 0.92780 0.99482 0.83485 0.86804 1.21932 0.88179 0.89462 0.95567 1.45233 1.27731 1.08689 1.50446 1.19042 1.00337 0.87655 1.29194 0.90103 1.24859 0.98165 0.97657 0.99472 1.69928 1.29610 1.23108 1.33579 0.86116 0.79570 0.82688 0.77452 1.21625 1.21749 1.20557 1.21960 0.94727 0.99630 1.04360 1.22388 0.92699 0.93627 0.93133 1.67291 1.41080 0.98911 1.18969 0.88636 0.92246 0.92351 0.83927 0.91301 0.91568 0.90110 0.90459 0.92791 0.90963 0.89712 0.91587 0.93071 0.92927 0.93512 0.84115 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.45 10.48 -18.72 -0.20 -3.64 16 3 C 0.32 3.80 7.49 -17.12 -0.13 3.67 16 4 C -0.17 -1.90 9.74 -39.28 -0.38 -2.28 16 5 C -0.01 -0.09 5.54 -104.35 -0.58 -0.67 16 6 C 0.10 1.02 6.11 36.01 0.22 1.24 16 7 O -0.35 -5.24 9.86 -55.14 -0.54 -5.79 16 8 C 0.05 0.69 5.70 36.00 0.21 0.90 16 9 C 0.53 9.78 7.97 -10.99 -0.09 9.70 16 10 O -0.53 -12.07 16.85 -14.35 -0.24 -12.31 16 11 N -0.61 -10.94 2.95 -156.77 -0.46 -11.40 16 12 C 0.08 1.28 6.01 -1.68 -0.01 1.27 16 13 C 0.14 2.50 5.53 -62.56 -0.35 2.15 16 14 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 15 C -0.15 -2.49 6.81 -22.29 -0.15 -2.64 16 16 C 0.10 1.93 5.24 -62.54 -0.33 1.61 16 17 H 0.11 2.15 8.06 -51.93 -0.42 1.73 16 18 C 0.17 4.10 4.77 -1.68 -0.01 4.09 16 19 N -0.60 -13.92 3.02 -156.36 -0.47 -14.39 16 20 C -0.23 -6.07 10.36 -15.06 -0.16 -6.23 16 21 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 22 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 23 N -0.92 -26.37 10.61 55.49 0.59 -25.78 16 24 Si 0.91 21.30 29.56 -169.99 -5.02 16.27 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C -0.19 -1.89 9.81 -39.43 -0.39 -2.27 16 29 C 0.14 1.35 11.18 -17.56 -0.20 1.16 16 30 N -0.54 -6.27 9.22 -13.33 -0.12 -6.39 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 34 H 0.14 1.42 8.06 -52.48 -0.42 0.99 16 35 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 36 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 1.40 7.53 -51.93 -0.39 1.01 16 44 H 0.05 1.37 7.64 -51.93 -0.40 0.97 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 47 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -34.76 393.07 -9.02 -43.78 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.09 Total: 0.89 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: -1.38 Total: 12.84 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.47 Total: -57.96 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.98 Total: -21.74 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.76 -9.02 -43.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692369170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.605 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds