Wall clock time and date at job start Wed Apr 1 2020 05:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35672 * 116.99657 * 2 1 4 4 C 1.38921 * 119.68220 * 180.29887 * 3 2 1 5 5 C 1.38380 * 119.11204 * 180.24507 * 4 3 2 6 6 C 1.50700 * 120.75836 * 179.73346 * 5 4 3 7 7 O 1.42900 * 109.46789 * 269.72245 * 6 5 4 8 8 C 1.42911 * 113.99864 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47152 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00203 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00015 * 179.97438 * 9 8 7 12 12 C 1.47868 * 126.94634 * 359.97438 * 11 9 8 13 13 C 1.56013 * 105.10936 * 182.01879 * 12 11 9 14 14 H 1.08997 * 116.25133 * 158.83332 * 13 12 11 15 15 C 1.57091 * 99.60601 * 32.80348 * 13 12 11 16 16 C 1.49295 * 126.94790 * 179.97438 * 11 9 8 17 17 H 1.09004 * 116.15118 * 16.68177 * 16 11 9 18 18 C 1.56017 * 104.09436 * 246.67961 * 16 11 9 19 19 N 1.47868 * 105.10479 * 288.76495 * 18 16 11 20 20 C 1.36942 * 126.94488 * 181.99959 * 19 18 16 21 21 H 1.07993 * 120.00094 * 173.67052 * 20 19 18 22 22 C 1.38815 * 119.99717 * 353.66540 * 20 19 18 23 23 N 1.31615 * 120.00247 * 6.42273 * 22 20 19 24 24 Si 1.86804 * 119.99820 * 186.41666 * 22 20 19 25 25 H 1.48500 * 109.46930 * 94.98834 * 24 22 20 26 26 H 1.48497 * 109.47003 * 214.98829 * 24 22 20 27 27 H 1.48501 * 109.47026 * 334.98999 * 24 22 20 28 28 C 1.38829 * 118.48075 * 359.46608 * 5 4 3 29 29 C 1.38048 * 119.29497 * 0.26946 * 28 5 4 30 30 N 1.31967 * 120.82742 * 359.97438 * 29 28 5 31 31 H 1.09001 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47212 * 299.99611 * 1 2 3 33 33 H 1.08996 * 109.47406 * 60.00482 * 1 2 3 34 34 H 1.08004 * 120.44626 * 359.97438 * 4 3 2 35 35 H 1.08996 * 109.47144 * 149.72866 * 6 5 4 36 36 H 1.08994 * 109.47195 * 29.72050 * 6 5 4 37 37 H 1.08997 * 109.46874 * 60.00388 * 8 7 6 38 38 H 1.08996 * 109.46511 * 300.00416 * 8 7 6 39 39 H 1.09000 * 110.31236 * 300.92872 * 12 11 9 40 40 H 1.09005 * 110.31287 * 63.11112 * 12 11 9 41 41 H 1.09000 * 112.36810 * 191.71506 * 15 13 12 42 42 H 1.09004 * 112.44189 * 64.29694 * 15 13 12 43 43 H 1.09002 * 110.31790 * 47.67223 * 18 16 11 44 44 H 1.08996 * 110.31478 * 169.85559 * 18 16 11 45 45 H 0.97000 * 120.00389 * 179.97438 * 23 22 20 46 46 H 1.08003 * 120.35047 * 180.25054 * 28 5 4 47 47 H 1.07991 * 119.58390 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0063 5 6 4.0485 2.5132 -0.0011 6 6 5.5512 2.6270 -0.0016 7 8 6.0265 2.6633 1.3456 8 6 7.4471 2.7715 1.4580 9 6 7.8350 2.8005 2.9139 10 8 6.9794 2.7345 3.7709 11 7 9.1328 2.8987 3.2636 12 6 10.2945 2.9864 2.3529 13 6 11.5424 3.0278 3.2884 14 1 12.4919 2.7377 2.8387 15 6 11.0188 2.1265 4.4638 16 6 9.6883 2.9410 4.6487 17 1 9.0211 2.6090 5.4442 18 6 10.2790 4.3793 4.7774 19 7 11.4811 4.3806 3.9164 20 6 12.3605 5.4141 3.7322 21 1 13.2605 5.2609 3.1554 22 6 12.0948 6.6586 4.2867 23 7 11.0660 6.8139 5.0928 24 14 13.1975 8.1130 3.8889 25 1 12.6129 8.8838 2.7623 26 1 13.3105 8.9894 5.0824 27 1 14.5456 7.6219 3.5059 28 6 3.2504 3.6491 -0.0010 29 6 1.8770 3.5097 -0.0005 30 7 1.3186 2.3140 -0.0006 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 4.0229 0.3695 -0.0108 35 1 5.8461 3.5417 -0.5156 36 1 5.9805 1.7669 -0.5152 37 1 7.7809 3.6894 0.9743 38 1 7.9160 1.9146 0.9743 39 1 10.3353 2.1100 1.7061 40 1 10.2391 3.8965 1.7555 41 1 11.6614 2.1766 5.3428 42 1 10.8361 1.0986 4.1503 43 1 9.5591 5.1172 4.4234 44 1 10.5542 4.5841 5.8120 45 1 10.8805 7.6834 5.4806 46 1 3.6993 4.6314 -0.0011 47 1 1.2517 4.3902 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692369170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:31 Heat of formation + Delta-G solvation = -33.356931 kcal Electronic energy + Delta-G solvation = -29819.731805 eV Core-core repulsion = 25583.605465 eV Total energy + Delta-G solvation = -4236.126340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.69681 -41.56628 -39.81417 -39.06491 -38.17840 -35.45420 -34.25793 -33.38270 -31.76310 -31.04468 -30.24654 -29.26377 -28.22342 -26.99125 -26.95757 -25.06715 -24.47803 -22.80860 -22.26555 -21.41039 -20.08668 -19.24353 -18.72708 -18.26853 -18.09082 -17.62839 -17.30174 -17.06225 -16.95064 -16.90665 -16.44024 -15.98189 -15.71141 -15.45581 -15.18896 -14.99367 -14.62382 -14.39181 -14.25136 -13.79202 -13.53769 -13.35426 -13.35211 -13.11907 -13.00507 -12.81794 -12.75547 -12.72254 -12.59104 -12.32125 -12.19065 -12.11524 -12.02120 -11.85010 -11.52787 -11.01781 -10.82637 -10.79549 -10.72038 -10.64888 -9.54856 -9.54726 -8.88933 -7.84702 -5.19632 0.01975 0.15810 1.48088 1.48907 1.57171 1.58377 1.73529 2.08482 2.49453 2.60142 3.03076 3.31200 3.33672 3.39525 3.56388 3.76215 3.83193 3.91423 3.92170 4.04205 4.07329 4.10721 4.16242 4.23029 4.26697 4.40984 4.41514 4.43628 4.49732 4.63120 4.71130 4.72209 4.73731 4.83774 4.86141 4.95906 5.03951 5.16501 5.26038 5.27001 5.39066 5.45717 5.54426 5.66447 5.98618 6.10942 6.19089 6.64941 6.77484 7.03393 7.16277 7.72261 8.43186 9.27028 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018769 B = 0.001996 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.468553 B =14025.693589 C =14761.498327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.322 6.322 3 C 0.297 3.703 4 C -0.179 4.179 5 C -0.021 4.021 6 C 0.097 3.903 7 O -0.390 6.390 8 C 0.060 3.940 9 C 0.518 3.482 10 O -0.588 6.588 11 N -0.608 5.608 12 C 0.087 3.913 13 C 0.136 3.864 14 H 0.140 0.860 15 C -0.130 4.130 16 C 0.100 3.900 17 H 0.109 0.891 18 C 0.187 3.813 19 N -0.616 5.616 20 C -0.227 4.227 21 H 0.098 0.902 22 C -0.073 4.073 23 N -0.957 5.957 24 Si 0.975 3.025 25 H -0.292 1.292 26 H -0.305 1.305 27 H -0.259 1.259 28 C -0.192 4.192 29 C 0.130 3.870 30 N -0.553 5.553 31 H 0.122 0.878 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.152 0.848 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.000 1.000 44 H 0.012 0.988 45 H 0.243 0.757 46 H 0.158 0.842 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.895 -13.777 -16.151 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.119 3.881 4 C -0.200 4.200 5 C -0.029 4.029 6 C 0.022 3.978 7 O -0.309 6.309 8 C -0.019 4.019 9 C 0.307 3.693 10 O -0.469 6.469 11 N -0.343 5.343 12 C -0.037 4.037 13 C 0.029 3.971 14 H 0.157 0.843 15 C -0.169 4.169 16 C -0.003 4.003 17 H 0.127 0.873 18 C 0.061 3.939 19 N -0.341 5.341 20 C -0.356 4.356 21 H 0.116 0.884 22 C -0.265 4.265 23 N -0.606 5.606 24 Si 0.805 3.195 25 H -0.219 1.219 26 H -0.232 1.232 27 H -0.184 1.184 28 C -0.212 4.212 29 C -0.024 4.024 30 N -0.277 5.277 31 H 0.141 0.859 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.169 0.831 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.018 0.982 44 H 0.030 0.970 45 H 0.052 0.948 46 H 0.175 0.825 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -13.302 -13.944 -15.546 24.760 hybrid contribution 0.842 1.705 0.414 1.947 sum -12.460 -12.239 -15.132 23.108 Atomic orbital electron populations 1.23050 0.75796 1.04660 1.02204 1.86216 1.24441 1.24406 1.87931 1.20020 0.89765 0.85132 0.93185 1.21147 0.92070 0.99776 1.06967 1.20007 0.95843 0.92504 0.94510 1.21565 0.88775 1.04084 0.83393 1.88034 1.20435 1.95405 1.27073 1.22210 0.82708 1.04964 0.91978 1.20609 0.80769 0.75997 0.91876 1.90672 1.49894 1.52507 1.53788 1.49234 1.05231 1.70799 1.09000 1.23332 0.85418 1.02037 0.92869 1.23609 0.96845 0.84180 0.92435 0.84279 1.24088 0.94266 0.98520 1.00028 1.24153 0.94409 0.96944 0.84822 0.87347 1.21500 0.87805 0.91319 0.93268 1.45493 1.26914 1.10706 1.50973 1.19551 1.00741 0.88156 1.27170 0.88395 1.25697 0.99894 1.00602 1.00341 1.70175 1.32040 1.22704 1.35712 0.85090 0.78811 0.79346 0.76290 1.21898 1.23212 1.18365 1.22254 0.94923 1.00279 1.03749 1.22914 0.93292 0.93989 0.92249 1.67329 1.41547 0.99416 1.19445 0.85947 0.92876 0.92176 0.83069 0.89251 0.88971 0.88502 0.86296 0.87156 0.92249 0.90243 0.87698 0.98197 0.97024 0.94794 0.82469 0.79322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 113.37 1.18 1.75 16 2 O -0.32 -7.14 10.48 -89.90 -0.94 -8.08 16 3 C 0.30 7.09 7.49 84.79 0.63 7.72 16 4 C -0.18 -3.95 9.74 22.47 0.22 -3.73 16 5 C -0.02 -0.43 5.54 -19.69 -0.11 -0.54 16 6 C 0.10 1.74 6.11 71.24 0.44 2.17 16 7 O -0.39 -10.79 9.86 -129.94 -1.28 -12.07 16 8 C 0.06 1.47 5.70 71.23 0.41 1.88 16 9 C 0.52 18.57 7.97 87.66 0.70 19.26 16 10 O -0.59 -27.02 16.85 16.00 0.27 -26.75 16 11 N -0.61 -20.89 2.95 -768.30 -2.26 -23.16 16 12 C 0.09 2.43 6.01 87.16 0.52 2.95 16 13 C 0.14 4.31 5.53 46.94 0.26 4.57 16 14 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 15 C -0.13 -3.86 6.81 33.47 0.23 -3.63 16 16 C 0.10 3.82 5.24 46.94 0.25 4.06 16 17 H 0.11 4.22 8.06 -2.38 -0.02 4.20 16 18 C 0.19 9.23 4.77 87.16 0.42 9.65 16 19 N -0.62 -28.50 3.02 -648.60 -1.96 -30.46 16 20 C -0.23 -11.67 10.36 84.03 0.87 -10.79 16 21 H 0.10 4.59 7.84 -2.91 -0.02 4.57 16 22 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 23 N -0.96 -58.01 10.61 21.65 0.23 -57.78 16 24 Si 0.98 44.43 29.56 68.60 2.03 46.45 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 27 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 28 C -0.19 -3.65 9.81 22.37 0.22 -3.43 16 29 C 0.13 2.46 11.18 84.63 0.95 3.40 16 30 N -0.55 -12.68 9.22 -308.97 -2.85 -15.52 16 31 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 34 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.09 1.21 8.10 -2.39 -0.02 1.19 16 36 H 0.09 1.14 8.10 -2.39 -0.02 1.12 16 37 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 43 H 0.00 -0.01 7.53 -2.39 -0.02 -0.03 16 44 H 0.01 0.65 7.64 -2.39 -0.02 0.63 16 45 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 47 H 0.19 2.27 8.06 -2.92 -0.02 2.24 16 Total: -1.00 -81.96 393.07 1.84 -80.12 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.97 Total: 15.50 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 7.64 Total: 31.75 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -6.84 Total: -126.92 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -1.95 Total: -46.90 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -81.96 1.84 -80.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692369170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.764 kcal (2) G-P(sol) polarization free energy of solvation -81.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds