Wall clock time and date at job start Wed Apr 1 2020 04:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 119.99770 * 2 1 4 4 C 1.52997 * 109.47405 * 270.00037 * 3 2 1 5 5 N 1.46900 * 109.47419 * 180.02562 * 4 3 2 6 6 C 1.46902 * 110.99898 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46810 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00332 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99843 * 179.97438 * 7 6 5 10 10 C 1.37092 * 120.00023 * 180.02562 * 9 7 6 11 11 H 1.08008 * 119.99785 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00100 * 179.97438 * 10 9 7 13 13 N 1.31402 * 119.99970 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00115 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47204 * 89.99933 * 14 12 10 16 16 H 1.48497 * 109.47311 * 210.00184 * 14 12 10 17 17 H 1.48503 * 109.47017 * 330.00278 * 14 12 10 18 18 C 1.34774 * 120.00612 * 179.97438 * 2 1 3 19 19 O 1.21589 * 120.00130 * 185.10596 * 18 2 1 20 20 C 1.47533 * 119.99578 * 5.10730 * 18 2 1 21 21 C 1.39529 * 120.05425 * 325.83692 * 20 18 2 22 22 C 1.37786 * 120.18352 * 179.97438 * 21 20 18 23 23 C 1.38644 * 119.97894 * 0.20911 * 22 21 20 24 24 C 1.37665 * 120.31912 * 0.02562 * 23 22 21 25 25 C 1.38880 * 120.86707 * 359.58777 * 24 23 22 26 26 O 1.35863 * 111.29607 * 181.06411 * 25 24 23 27 27 C 1.43784 * 109.23335 * 340.64827 * 26 25 24 28 28 C 1.51675 * 132.13466 * 179.09478 * 24 23 22 29 29 H 1.08994 * 109.47095 * 275.98160 * 1 2 3 30 30 H 1.08998 * 109.47060 * 35.99080 * 1 2 3 31 31 H 1.08998 * 109.46381 * 155.98513 * 1 2 3 32 32 H 1.09007 * 109.47179 * 29.99801 * 3 2 1 33 33 H 1.09000 * 109.47480 * 149.99633 * 3 2 1 34 34 H 1.08998 * 109.46987 * 300.00019 * 4 3 2 35 35 H 1.09000 * 109.47131 * 59.99382 * 4 3 2 36 36 H 1.00892 * 111.00067 * 56.04559 * 5 4 3 37 37 H 1.08996 * 109.46995 * 299.99377 * 6 5 4 38 38 H 1.08996 * 109.47141 * 60.00302 * 6 5 4 39 39 H 0.96997 * 119.99696 * 359.97438 * 9 7 6 40 40 H 0.96999 * 120.00436 * 180.02562 * 13 12 10 41 41 H 1.07998 * 119.91104 * 359.97438 * 21 20 18 42 42 H 1.08004 * 120.00915 * 180.23922 * 22 21 20 43 43 H 1.08000 * 119.84063 * 180.02562 * 23 22 21 44 44 H 1.08995 * 110.75546 * 269.56048 * 27 26 25 45 45 H 1.09008 * 110.90780 * 146.26899 * 27 26 25 46 46 H 1.09003 * 110.93927 * 313.71360 * 28 24 23 47 47 H 1.08995 * 110.94236 * 77.37140 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 7 3.1875 2.9824 -1.4424 6 6 3.4512 3.4380 -2.8139 7 6 4.2044 4.7427 -2.7736 8 8 4.4927 5.2440 -1.7074 9 7 4.5577 5.3526 -3.9225 10 6 5.2433 6.5392 -3.8859 11 1 5.5000 6.9855 -2.9364 12 6 5.6080 7.1677 -5.0703 13 7 5.2953 6.6249 -6.2254 14 14 6.5416 8.7849 -5.0204 15 1 8.0015 8.5134 -5.0053 16 1 6.2003 9.5906 -6.2202 17 1 6.1652 9.5362 -3.7960 18 6 2.1390 -1.1671 0.0005 19 8 3.3513 -1.1690 0.0942 20 6 1.4058 -2.4423 -0.1127 21 6 0.1425 -2.5756 0.4645 22 6 -0.5449 -3.7652 0.3600 23 6 0.0208 -4.8350 -0.3165 24 6 1.2686 -4.7160 -0.8856 25 6 1.9794 -3.5258 -0.8018 26 8 3.1714 -3.6164 -1.4473 27 6 3.5162 -5.0024 -1.6130 28 6 2.1338 -5.6958 -1.6550 29 1 -0.3633 0.1071 1.0220 30 1 -0.3633 0.8315 -0.6039 31 1 -0.3632 -0.9387 -0.4182 32 1 1.6084 2.0285 0.5138 33 1 3.1499 1.1386 0.5139 34 1 3.0416 0.9509 -1.9563 35 1 1.5001 1.8408 -1.9563 36 1 4.0450 2.9046 -0.9165 37 1 4.0471 2.6901 -3.3369 38 1 2.5060 3.5807 -3.3375 39 1 4.3275 4.9516 -4.7751 40 1 5.5502 7.0634 -7.0522 41 1 -0.2978 -1.7441 0.9947 42 1 -1.5242 -3.8640 0.8046 43 1 -0.5201 -5.7663 -0.3975 44 1 4.1015 -5.3589 -0.7654 45 1 4.0559 -5.1601 -2.5468 46 1 2.1676 -6.6629 -1.1533 47 1 1.7824 -5.8035 -2.6811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714761241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:15 Heat of formation + Delta-G solvation = -47.088128 kcal Electronic energy + Delta-G solvation = -29363.659839 eV Core-core repulsion = 25126.938070 eV Total energy + Delta-G solvation = -4236.721769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69699 -39.98097 -38.24229 -37.71975 -36.32098 -34.98311 -33.80117 -33.19179 -31.21856 -30.91420 -30.18288 -29.11448 -27.21082 -26.10053 -24.44310 -23.84687 -23.05920 -22.37100 -21.86752 -19.80841 -19.13066 -17.89834 -17.84275 -17.46811 -17.06920 -16.40327 -16.29372 -16.06864 -15.67764 -15.41329 -15.32869 -14.55129 -14.38813 -14.04248 -13.92707 -13.83200 -13.61167 -13.55288 -13.42118 -13.18662 -13.06637 -12.88658 -12.51397 -12.28818 -12.18626 -12.01637 -11.98891 -11.50574 -11.47247 -11.45353 -11.21523 -11.07298 -10.92428 -10.36034 -10.17980 -9.99981 -9.46883 -9.30888 -8.92181 -8.57895 -8.40287 -8.02592 -7.91637 -6.37563 -3.78221 0.49269 0.83900 2.50085 2.72583 2.86001 3.21158 3.29315 3.31712 3.35712 3.90484 3.95823 4.03043 4.16455 4.21019 4.41175 4.49085 4.54997 4.65840 4.72999 4.84647 4.93063 5.00649 5.02625 5.06636 5.20975 5.23184 5.25606 5.26727 5.32159 5.39117 5.44065 5.57047 5.69548 5.76234 5.84064 5.90070 5.92765 5.96673 6.04878 6.09098 6.26891 6.35837 6.70143 7.15074 7.23540 7.59239 7.69794 8.00691 8.10674 8.65866 9.22049 9.58836 10.10507 10.80305 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.001758 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.301411 B =15919.444300 C =16726.225487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.610 5.610 3 C 0.118 3.882 4 C 0.046 3.954 5 N -0.666 5.666 6 C 0.052 3.948 7 C 0.442 3.558 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.559 3.441 19 O -0.521 6.521 20 C -0.154 4.154 21 C -0.066 4.066 22 C -0.158 4.158 23 C -0.047 4.047 24 C -0.186 4.186 25 C 0.166 3.834 26 O -0.284 6.284 27 C 0.047 3.953 28 C -0.109 4.109 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.351 0.649 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.150 0.850 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.094 0.906 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.277 -28.499 9.796 33.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.344 5.344 3 C -0.005 4.005 4 C -0.085 4.085 5 N -0.299 5.299 6 C -0.081 4.081 7 C 0.227 3.773 8 O -0.467 6.467 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.181 4.181 13 N -0.544 5.544 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 C 0.347 3.653 19 O -0.397 6.397 20 C -0.158 4.158 21 C -0.084 4.084 22 C -0.176 4.176 23 C -0.065 4.065 24 C -0.187 4.187 25 C 0.118 3.882 26 O -0.196 6.196 27 C -0.028 4.028 28 C -0.146 4.146 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.170 0.830 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.168 0.832 42 H 0.153 0.847 43 H 0.147 0.853 44 H 0.099 0.901 45 H 0.128 0.872 46 H 0.112 0.888 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.775 -27.509 10.351 32.897 hybrid contribution 0.835 -0.251 -1.063 1.375 sum -13.939 -27.760 9.288 32.422 Atomic orbital electron populations 1.22455 0.79730 1.04262 1.01919 1.47667 1.07028 1.05905 1.73793 1.21427 0.98388 0.83486 0.97175 1.22256 0.99048 0.90581 0.96623 1.60032 1.28361 1.27837 1.13681 1.21657 1.00218 0.96094 0.90097 1.19800 0.85124 0.87292 0.85037 1.90519 1.59278 1.67213 1.29647 1.41859 1.50078 1.21416 1.06765 1.19712 1.30818 0.97716 0.94542 0.87901 1.25266 0.98236 0.99901 0.94650 1.69612 1.47120 1.40197 0.97467 0.85846 0.79404 0.81161 0.77799 1.20446 1.20953 1.19403 1.18164 0.87092 0.83299 0.76725 1.90831 1.13450 1.86984 1.48412 1.19140 0.97062 0.93957 1.05628 1.21608 0.91705 0.98474 0.96639 1.20994 1.01160 0.92737 1.02758 1.20488 0.92764 0.99015 0.94274 1.20810 0.97142 0.95993 1.04770 1.19436 0.85637 0.93334 0.89810 1.86962 1.34546 1.27461 1.70632 1.23941 0.96678 0.78422 1.03712 1.21829 0.93144 0.98601 1.01054 0.91923 0.90725 0.89380 0.89141 0.89501 0.95160 0.91110 0.82963 0.93810 0.89630 0.77457 0.91912 0.83230 0.84678 0.85311 0.90119 0.87157 0.88754 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 8.84 59.85 0.53 0.94 16 2 N -0.61 -6.88 2.87 -182.81 -0.53 -7.40 16 3 C 0.12 1.49 5.73 -4.04 -0.02 1.46 16 4 C 0.05 0.65 6.01 -3.83 -0.02 0.63 16 5 N -0.67 -11.70 6.13 -115.06 -0.70 -12.40 16 6 C 0.05 0.99 6.17 -4.97 -0.03 0.96 16 7 C 0.44 10.93 7.82 -10.98 -0.09 10.84 16 8 O -0.58 -16.40 15.78 5.55 0.09 -16.31 16 9 N -0.56 -14.84 5.29 -10.96 -0.06 -14.90 16 10 C -0.30 -8.56 9.68 -14.94 -0.14 -8.70 16 11 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -25.12 13.05 55.50 0.72 -24.39 16 14 Si 0.93 21.52 29.55 -169.99 -5.02 16.50 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C 0.56 7.71 7.39 -12.47 -0.09 7.62 16 19 O -0.52 -9.36 16.06 2.83 0.05 -9.31 16 20 C -0.15 -1.73 5.45 -104.72 -0.57 -2.30 16 21 C -0.07 -0.49 7.37 -39.27 -0.29 -0.78 16 22 C -0.16 -0.92 10.05 -39.60 -0.40 -1.32 16 23 C -0.05 -0.29 10.02 -39.64 -0.40 -0.69 16 24 C -0.19 -1.54 6.27 -104.11 -0.65 -2.19 16 25 C 0.17 1.91 6.69 -38.44 -0.26 1.65 16 26 O -0.28 -3.60 10.66 -21.77 -0.23 -3.83 16 27 C 0.05 0.35 8.01 38.06 0.30 0.66 16 28 C -0.11 -0.63 7.12 -26.50 -0.19 -0.82 16 29 H 0.06 0.31 7.53 -51.93 -0.39 -0.08 16 30 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.09 0.53 4.65 -51.93 -0.24 0.29 16 32 H 0.09 1.02 8.07 -51.92 -0.42 0.60 16 33 H 0.09 1.24 7.36 -51.93 -0.38 0.86 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.35 6.46 8.43 -39.30 -0.33 6.13 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.39 9.86 7.90 -40.82 -0.32 9.53 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.15 0.77 5.02 -52.49 -0.26 0.51 16 42 H 0.14 0.41 8.06 -52.48 -0.42 -0.02 16 43 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.11 0.59 8.14 -51.92 -0.42 0.16 16 46 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -37.18 392.62 -8.70 -45.88 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.51 Total: 11.83 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -2.42 Total: 8.44 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.56 Total: -59.10 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.10 Total: -29.46 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.18 -8.70 -45.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714761241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.211 kcal (2) G-P(sol) polarization free energy of solvation -37.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds