Wall clock time and date at job start Wed Apr 1 2020 04:29:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46505 * 119.99770 * 2 1
4 4 C 1.52997 * 109.47405 * 270.00037 * 3 2 1
5 5 N 1.46900 * 109.47419 * 180.02562 * 4 3 2
6 6 C 1.46902 * 110.99898 * 179.97438 * 5 4 3
7 7 C 1.50703 * 109.46810 * 179.97438 * 6 5 4
8 8 O 1.21291 * 120.00332 * 359.97438 * 7 6 5
9 9 N 1.34783 * 119.99843 * 179.97438 * 7 6 5
10 10 C 1.37092 * 120.00023 * 180.02562 * 9 7 6
11 11 H 1.08008 * 119.99785 * 359.97438 * 10 9 7
12 12 C 1.38949 * 120.00100 * 179.97438 * 10 9 7
13 13 N 1.31402 * 119.99970 * 0.02562 * 12 10 9
14 14 Si 1.86795 * 120.00115 * 179.97438 * 12 10 9
15 15 H 1.48504 * 109.47204 * 89.99933 * 14 12 10
16 16 H 1.48497 * 109.47311 * 210.00184 * 14 12 10
17 17 H 1.48503 * 109.47017 * 330.00278 * 14 12 10
18 18 C 1.34774 * 120.00612 * 179.97438 * 2 1 3
19 19 O 1.21589 * 120.00130 * 185.10596 * 18 2 1
20 20 C 1.47533 * 119.99578 * 5.10730 * 18 2 1
21 21 C 1.39529 * 120.05425 * 325.83692 * 20 18 2
22 22 C 1.37786 * 120.18352 * 179.97438 * 21 20 18
23 23 C 1.38644 * 119.97894 * 0.20911 * 22 21 20
24 24 C 1.37665 * 120.31912 * 0.02562 * 23 22 21
25 25 C 1.38880 * 120.86707 * 359.58777 * 24 23 22
26 26 O 1.35863 * 111.29607 * 181.06411 * 25 24 23
27 27 C 1.43784 * 109.23335 * 340.64827 * 26 25 24
28 28 C 1.51675 * 132.13466 * 179.09478 * 24 23 22
29 29 H 1.08994 * 109.47095 * 275.98160 * 1 2 3
30 30 H 1.08998 * 109.47060 * 35.99080 * 1 2 3
31 31 H 1.08998 * 109.46381 * 155.98513 * 1 2 3
32 32 H 1.09007 * 109.47179 * 29.99801 * 3 2 1
33 33 H 1.09000 * 109.47480 * 149.99633 * 3 2 1
34 34 H 1.08998 * 109.46987 * 300.00019 * 4 3 2
35 35 H 1.09000 * 109.47131 * 59.99382 * 4 3 2
36 36 H 1.00892 * 111.00067 * 56.04559 * 5 4 3
37 37 H 1.08996 * 109.46995 * 299.99377 * 6 5 4
38 38 H 1.08996 * 109.47141 * 60.00302 * 6 5 4
39 39 H 0.96997 * 119.99696 * 359.97438 * 9 7 6
40 40 H 0.96999 * 120.00436 * 180.02562 * 13 12 10
41 41 H 1.07998 * 119.91104 * 359.97438 * 21 20 18
42 42 H 1.08004 * 120.00915 * 180.23922 * 22 21 20
43 43 H 1.08000 * 119.84063 * 180.02562 * 23 22 21
44 44 H 1.08995 * 110.75546 * 269.56048 * 27 26 25
45 45 H 1.09008 * 110.90780 * 146.26899 * 27 26 25
46 46 H 1.09003 * 110.93927 * 313.71360 * 28 24 23
47 47 H 1.08995 * 110.94236 * 77.37140 * 28 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4525 1.7105 -1.4424
5 7 3.1875 2.9824 -1.4424
6 6 3.4512 3.4380 -2.8139
7 6 4.2044 4.7427 -2.7736
8 8 4.4927 5.2440 -1.7074
9 7 4.5577 5.3526 -3.9225
10 6 5.2433 6.5392 -3.8859
11 1 5.5000 6.9855 -2.9364
12 6 5.6080 7.1677 -5.0703
13 7 5.2953 6.6249 -6.2254
14 14 6.5416 8.7849 -5.0204
15 1 8.0015 8.5134 -5.0053
16 1 6.2003 9.5906 -6.2202
17 1 6.1652 9.5362 -3.7960
18 6 2.1390 -1.1671 0.0005
19 8 3.3513 -1.1690 0.0942
20 6 1.4058 -2.4423 -0.1127
21 6 0.1425 -2.5756 0.4645
22 6 -0.5449 -3.7652 0.3600
23 6 0.0208 -4.8350 -0.3165
24 6 1.2686 -4.7160 -0.8856
25 6 1.9794 -3.5258 -0.8018
26 8 3.1714 -3.6164 -1.4473
27 6 3.5162 -5.0024 -1.6130
28 6 2.1338 -5.6958 -1.6550
29 1 -0.3633 0.1071 1.0220
30 1 -0.3633 0.8315 -0.6039
31 1 -0.3632 -0.9387 -0.4182
32 1 1.6084 2.0285 0.5138
33 1 3.1499 1.1386 0.5139
34 1 3.0416 0.9509 -1.9563
35 1 1.5001 1.8408 -1.9563
36 1 4.0450 2.9046 -0.9165
37 1 4.0471 2.6901 -3.3369
38 1 2.5060 3.5807 -3.3375
39 1 4.3275 4.9516 -4.7751
40 1 5.5502 7.0634 -7.0522
41 1 -0.2978 -1.7441 0.9947
42 1 -1.5242 -3.8640 0.8046
43 1 -0.5201 -5.7663 -0.3975
44 1 4.1015 -5.3589 -0.7654
45 1 4.0559 -5.1601 -2.5468
46 1 2.1676 -6.6629 -1.1533
47 1 1.7824 -5.8035 -2.6811
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001714761241.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:29:15
Heat of formation + Delta-G solvation = -47.088128 kcal
Electronic energy + Delta-G solvation = -29363.659839 eV
Core-core repulsion = 25126.938070 eV
Total energy + Delta-G solvation = -4236.721769 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-41.69699 -39.98097 -38.24229 -37.71975 -36.32098 -34.98311 -33.80117 -33.19179
-31.21856 -30.91420 -30.18288 -29.11448 -27.21082 -26.10053 -24.44310 -23.84687
-23.05920 -22.37100 -21.86752 -19.80841 -19.13066 -17.89834 -17.84275 -17.46811
-17.06920 -16.40327 -16.29372 -16.06864 -15.67764 -15.41329 -15.32869 -14.55129
-14.38813 -14.04248 -13.92707 -13.83200 -13.61167 -13.55288 -13.42118 -13.18662
-13.06637 -12.88658 -12.51397 -12.28818 -12.18626 -12.01637 -11.98891 -11.50574
-11.47247 -11.45353 -11.21523 -11.07298 -10.92428 -10.36034 -10.17980 -9.99981
-9.46883 -9.30888 -8.92181 -8.57895 -8.40287 -8.02592 -7.91637 -6.37563
-3.78221 0.49269 0.83900 2.50085 2.72583 2.86001 3.21158 3.29315
3.31712 3.35712 3.90484 3.95823 4.03043 4.16455 4.21019 4.41175
4.49085 4.54997 4.65840 4.72999 4.84647 4.93063 5.00649 5.02625
5.06636 5.20975 5.23184 5.25606 5.26727 5.32159 5.39117 5.44065
5.57047 5.69548 5.76234 5.84064 5.90070 5.92765 5.96673 6.04878
6.09098 6.26891 6.35837 6.70143 7.15074 7.23540 7.59239 7.69794
8.00691 8.10674 8.65866 9.22049 9.58836 10.10507 10.80305
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.019355 B = 0.001758 C = 0.001674
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1446.301411 B =15919.444300 C =16726.225487
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.059 3.941
2 N -0.610 5.610
3 C 0.118 3.882
4 C 0.046 3.954
5 N -0.666 5.666
6 C 0.052 3.948
7 C 0.442 3.558
8 O -0.582 6.582
9 N -0.564 5.564
10 C -0.298 4.298
11 H 0.103 0.897
12 C 0.021 3.979
13 N -0.902 5.902
14 Si 0.931 3.069
15 H -0.278 1.278
16 H -0.284 1.284
17 H -0.269 1.269
18 C 0.559 3.441
19 O -0.521 6.521
20 C -0.154 4.154
21 C -0.066 4.066
22 C -0.158 4.158
23 C -0.047 4.047
24 C -0.186 4.186
25 C 0.166 3.834
26 O -0.284 6.284
27 C 0.047 3.953
28 C -0.109 4.109
29 H 0.062 0.938
30 H 0.074 0.926
31 H 0.088 0.912
32 H 0.090 0.910
33 H 0.087 0.913
34 H 0.030 0.970
35 H 0.070 0.930
36 H 0.351 0.649
37 H 0.044 0.956
38 H 0.085 0.915
39 H 0.392 0.608
40 H 0.271 0.729
41 H 0.150 0.850
42 H 0.135 0.865
43 H 0.129 0.871
44 H 0.081 0.919
45 H 0.110 0.890
46 H 0.094 0.906
47 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.277 -28.499 9.796 33.787
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 N -0.344 5.344
3 C -0.005 4.005
4 C -0.085 4.085
5 N -0.299 5.299
6 C -0.081 4.081
7 C 0.227 3.773
8 O -0.467 6.467
9 N -0.201 5.201
10 C -0.428 4.428
11 H 0.121 0.879
12 C -0.181 4.181
13 N -0.544 5.544
14 Si 0.758 3.242
15 H -0.204 1.204
16 H -0.210 1.210
17 H -0.194 1.194
18 C 0.347 3.653
19 O -0.397 6.397
20 C -0.158 4.158
21 C -0.084 4.084
22 C -0.176 4.176
23 C -0.065 4.065
24 C -0.187 4.187
25 C 0.118 3.882
26 O -0.196 6.196
27 C -0.028 4.028
28 C -0.146 4.146
29 H 0.081 0.919
30 H 0.093 0.907
31 H 0.106 0.894
32 H 0.109 0.891
33 H 0.105 0.895
34 H 0.048 0.952
35 H 0.089 0.911
36 H 0.170 0.830
37 H 0.062 0.938
38 H 0.104 0.896
39 H 0.225 0.775
40 H 0.081 0.919
41 H 0.168 0.832
42 H 0.153 0.847
43 H 0.147 0.853
44 H 0.099 0.901
45 H 0.128 0.872
46 H 0.112 0.888
47 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -14.775 -27.509 10.351 32.897
hybrid contribution 0.835 -0.251 -1.063 1.375
sum -13.939 -27.760 9.288 32.422
Atomic orbital electron populations
1.22455 0.79730 1.04262 1.01919 1.47667 1.07028 1.05905 1.73793
1.21427 0.98388 0.83486 0.97175 1.22256 0.99048 0.90581 0.96623
1.60032 1.28361 1.27837 1.13681 1.21657 1.00218 0.96094 0.90097
1.19800 0.85124 0.87292 0.85037 1.90519 1.59278 1.67213 1.29647
1.41859 1.50078 1.21416 1.06765 1.19712 1.30818 0.97716 0.94542
0.87901 1.25266 0.98236 0.99901 0.94650 1.69612 1.47120 1.40197
0.97467 0.85846 0.79404 0.81161 0.77799 1.20446 1.20953 1.19403
1.18164 0.87092 0.83299 0.76725 1.90831 1.13450 1.86984 1.48412
1.19140 0.97062 0.93957 1.05628 1.21608 0.91705 0.98474 0.96639
1.20994 1.01160 0.92737 1.02758 1.20488 0.92764 0.99015 0.94274
1.20810 0.97142 0.95993 1.04770 1.19436 0.85637 0.93334 0.89810
1.86962 1.34546 1.27461 1.70632 1.23941 0.96678 0.78422 1.03712
1.21829 0.93144 0.98601 1.01054 0.91923 0.90725 0.89380 0.89141
0.89501 0.95160 0.91110 0.82963 0.93810 0.89630 0.77457 0.91912
0.83230 0.84678 0.85311 0.90119 0.87157 0.88754 0.88867
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.41 8.84 59.85 0.53 0.94 16
2 N -0.61 -6.88 2.87 -182.81 -0.53 -7.40 16
3 C 0.12 1.49 5.73 -4.04 -0.02 1.46 16
4 C 0.05 0.65 6.01 -3.83 -0.02 0.63 16
5 N -0.67 -11.70 6.13 -115.06 -0.70 -12.40 16
6 C 0.05 0.99 6.17 -4.97 -0.03 0.96 16
7 C 0.44 10.93 7.82 -10.98 -0.09 10.84 16
8 O -0.58 -16.40 15.78 5.55 0.09 -16.31 16
9 N -0.56 -14.84 5.29 -10.96 -0.06 -14.90 16
10 C -0.30 -8.56 9.68 -14.94 -0.14 -8.70 16
11 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16
12 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16
13 N -0.90 -25.12 13.05 55.50 0.72 -24.39 16
14 Si 0.93 21.52 29.55 -169.99 -5.02 16.50 16
15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16
17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
18 C 0.56 7.71 7.39 -12.47 -0.09 7.62 16
19 O -0.52 -9.36 16.06 2.83 0.05 -9.31 16
20 C -0.15 -1.73 5.45 -104.72 -0.57 -2.30 16
21 C -0.07 -0.49 7.37 -39.27 -0.29 -0.78 16
22 C -0.16 -0.92 10.05 -39.60 -0.40 -1.32 16
23 C -0.05 -0.29 10.02 -39.64 -0.40 -0.69 16
24 C -0.19 -1.54 6.27 -104.11 -0.65 -2.19 16
25 C 0.17 1.91 6.69 -38.44 -0.26 1.65 16
26 O -0.28 -3.60 10.66 -21.77 -0.23 -3.83 16
27 C 0.05 0.35 8.01 38.06 0.30 0.66 16
28 C -0.11 -0.63 7.12 -26.50 -0.19 -0.82 16
29 H 0.06 0.31 7.53 -51.93 -0.39 -0.08 16
30 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16
31 H 0.09 0.53 4.65 -51.93 -0.24 0.29 16
32 H 0.09 1.02 8.07 -51.92 -0.42 0.60 16
33 H 0.09 1.24 7.36 -51.93 -0.38 0.86 16
34 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16
35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
36 H 0.35 6.46 8.43 -39.30 -0.33 6.13 16
37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16
39 H 0.39 9.86 7.90 -40.82 -0.32 9.53 16
40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16
41 H 0.15 0.77 5.02 -52.49 -0.26 0.51 16
42 H 0.14 0.41 8.06 -52.48 -0.42 -0.02 16
43 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16
44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
45 H 0.11 0.59 8.14 -51.92 -0.42 0.16 16
46 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16
47 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16
LS Contribution 392.62 15.07 5.92 5.92
Total: -1.00 -37.18 392.62 -8.70 -45.88
By element:
Atomic # 1 Polarization: 18.34 SS G_CDS: -6.51 Total: 11.83 kcal
Atomic # 6 Polarization: 10.85 SS G_CDS: -2.42 Total: 8.44 kcal
Atomic # 7 Polarization: -58.53 SS G_CDS: -0.56 Total: -59.10 kcal
Atomic # 8 Polarization: -29.36 SS G_CDS: -0.10 Total: -29.46 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -37.18 -8.70 -45.88 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714761241.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.211 kcal
(2) G-P(sol) polarization free energy of solvation -37.181 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.392 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.877 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.088 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds