Wall clock time and date at job start Wed Apr 1 2020 04:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46505 * 119.99770 * 2 1 4 4 C 1.52997 * 109.47405 * 270.00037 * 3 2 1 5 5 N 1.46900 * 109.47419 * 180.02562 * 4 3 2 6 6 C 1.46902 * 110.99898 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46810 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00332 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99843 * 179.97438 * 7 6 5 10 10 C 1.37092 * 120.00023 * 180.02562 * 9 7 6 11 11 H 1.08008 * 119.99785 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00100 * 179.97438 * 10 9 7 13 13 N 1.31402 * 119.99970 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00115 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47204 * 89.99933 * 14 12 10 16 16 H 1.48497 * 109.47311 * 210.00184 * 14 12 10 17 17 H 1.48503 * 109.47017 * 330.00278 * 14 12 10 18 18 C 1.34774 * 120.00612 * 179.97438 * 2 1 3 19 19 O 1.21589 * 120.00130 * 185.10596 * 18 2 1 20 20 C 1.47533 * 119.99578 * 5.10730 * 18 2 1 21 21 C 1.39529 * 120.05425 * 325.83692 * 20 18 2 22 22 C 1.37786 * 120.18352 * 179.97438 * 21 20 18 23 23 C 1.38644 * 119.97894 * 0.20911 * 22 21 20 24 24 C 1.37665 * 120.31912 * 0.02562 * 23 22 21 25 25 C 1.38880 * 120.86707 * 359.58777 * 24 23 22 26 26 O 1.35863 * 111.29607 * 181.06411 * 25 24 23 27 27 C 1.43784 * 109.23335 * 340.64827 * 26 25 24 28 28 C 1.51675 * 132.13466 * 179.09478 * 24 23 22 29 29 H 1.08994 * 109.47095 * 275.98160 * 1 2 3 30 30 H 1.08998 * 109.47060 * 35.99080 * 1 2 3 31 31 H 1.08998 * 109.46381 * 155.98513 * 1 2 3 32 32 H 1.09007 * 109.47179 * 29.99801 * 3 2 1 33 33 H 1.09000 * 109.47480 * 149.99633 * 3 2 1 34 34 H 1.08998 * 109.46987 * 300.00019 * 4 3 2 35 35 H 1.09000 * 109.47131 * 59.99382 * 4 3 2 36 36 H 1.00892 * 111.00067 * 56.04559 * 5 4 3 37 37 H 1.08996 * 109.46995 * 299.99377 * 6 5 4 38 38 H 1.08996 * 109.47141 * 60.00302 * 6 5 4 39 39 H 0.96997 * 119.99696 * 359.97438 * 9 7 6 40 40 H 0.96999 * 120.00436 * 180.02562 * 13 12 10 41 41 H 1.07998 * 119.91104 * 359.97438 * 21 20 18 42 42 H 1.08004 * 120.00915 * 180.23922 * 22 21 20 43 43 H 1.08000 * 119.84063 * 180.02562 * 23 22 21 44 44 H 1.08995 * 110.75546 * 269.56048 * 27 26 25 45 45 H 1.09008 * 110.90780 * 146.26899 * 27 26 25 46 46 H 1.09003 * 110.93927 * 313.71360 * 28 24 23 47 47 H 1.08995 * 110.94236 * 77.37140 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 7 3.1875 2.9824 -1.4424 6 6 3.4512 3.4380 -2.8139 7 6 4.2044 4.7427 -2.7736 8 8 4.4927 5.2440 -1.7074 9 7 4.5577 5.3526 -3.9225 10 6 5.2433 6.5392 -3.8859 11 1 5.5000 6.9855 -2.9364 12 6 5.6080 7.1677 -5.0703 13 7 5.2953 6.6249 -6.2254 14 14 6.5416 8.7849 -5.0204 15 1 8.0015 8.5134 -5.0053 16 1 6.2003 9.5906 -6.2202 17 1 6.1652 9.5362 -3.7960 18 6 2.1390 -1.1671 0.0005 19 8 3.3513 -1.1690 0.0942 20 6 1.4058 -2.4423 -0.1127 21 6 0.1425 -2.5756 0.4645 22 6 -0.5449 -3.7652 0.3600 23 6 0.0208 -4.8350 -0.3165 24 6 1.2686 -4.7160 -0.8856 25 6 1.9794 -3.5258 -0.8018 26 8 3.1714 -3.6164 -1.4473 27 6 3.5162 -5.0024 -1.6130 28 6 2.1338 -5.6958 -1.6550 29 1 -0.3633 0.1071 1.0220 30 1 -0.3633 0.8315 -0.6039 31 1 -0.3632 -0.9387 -0.4182 32 1 1.6084 2.0285 0.5138 33 1 3.1499 1.1386 0.5139 34 1 3.0416 0.9509 -1.9563 35 1 1.5001 1.8408 -1.9563 36 1 4.0450 2.9046 -0.9165 37 1 4.0471 2.6901 -3.3369 38 1 2.5060 3.5807 -3.3375 39 1 4.3275 4.9516 -4.7751 40 1 5.5502 7.0634 -7.0522 41 1 -0.2978 -1.7441 0.9947 42 1 -1.5242 -3.8640 0.8046 43 1 -0.5201 -5.7663 -0.3975 44 1 4.1015 -5.3589 -0.7654 45 1 4.0559 -5.1601 -2.5468 46 1 2.1676 -6.6629 -1.1533 47 1 1.7824 -5.8035 -2.6811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714761241.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:14 Heat of formation + Delta-G solvation = -75.447538 kcal Electronic energy + Delta-G solvation = -29364.889595 eV Core-core repulsion = 25126.938070 eV Total energy + Delta-G solvation = -4237.951525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.34780 -40.88774 -40.18483 -38.37993 -37.55183 -36.29916 -35.76215 -33.85305 -33.30233 -31.71082 -30.94051 -30.00650 -28.14636 -27.54077 -25.93951 -24.68534 -23.99071 -22.99262 -22.81340 -21.21235 -20.53013 -19.92623 -18.53655 -18.25818 -17.93218 -17.81617 -17.17163 -17.03122 -16.91265 -16.52938 -16.41436 -16.09802 -15.88742 -15.38915 -15.18786 -14.90297 -14.59835 -14.45610 -14.17885 -14.13583 -13.96522 -13.86493 -13.64012 -13.54792 -13.35202 -13.01959 -12.91837 -12.82608 -12.77693 -12.55050 -12.43970 -12.15434 -12.12491 -12.08561 -11.74412 -11.53455 -10.95526 -10.43059 -10.04987 -9.94233 -9.77962 -9.50620 -9.18518 -8.48756 -5.98085 -0.13579 0.27146 1.36934 1.40605 1.53966 1.61588 1.88605 2.00383 2.26538 2.28277 2.68561 2.91520 3.17658 3.38220 3.41906 3.53034 3.64785 3.92427 3.94983 4.04551 4.08833 4.13920 4.24661 4.25270 4.37632 4.41427 4.42672 4.43251 4.51619 4.53230 4.62989 4.73995 4.78720 4.83336 4.86942 4.92151 4.95571 5.15967 5.30132 5.36562 5.38785 5.41651 5.63052 5.78019 6.01810 6.09248 6.20867 6.28286 6.56507 7.04636 7.09241 7.51671 8.06711 8.68744 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.001758 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.301411 B =15919.444300 C =16726.225487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.606 5.606 3 C 0.123 3.877 4 C 0.056 3.944 5 N -0.672 5.672 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.621 6.621 9 N -0.572 5.572 10 C -0.336 4.336 11 H 0.080 0.920 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.996 3.004 15 H -0.271 1.271 16 H -0.269 1.269 17 H -0.272 1.272 18 C 0.550 3.450 19 O -0.582 6.582 20 C -0.184 4.184 21 C -0.064 4.064 22 C -0.147 4.147 23 C -0.042 4.042 24 C -0.192 4.192 25 C 0.125 3.875 26 O -0.329 6.329 27 C 0.035 3.965 28 C -0.100 4.100 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.011 0.989 35 H 0.090 0.910 36 H 0.343 0.657 37 H 0.058 0.942 38 H 0.110 0.890 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.164 0.836 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.304 -29.959 9.738 36.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.337 5.337 3 C 0.000 4.000 4 C -0.074 4.074 5 N -0.304 5.304 6 C -0.067 4.067 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.214 4.214 13 N -0.561 5.561 14 Si 0.820 3.180 15 H -0.197 1.197 16 H -0.193 1.193 17 H -0.197 1.197 18 C 0.340 3.660 19 O -0.462 6.462 20 C -0.187 4.187 21 C -0.082 4.082 22 C -0.164 4.164 23 C -0.060 4.060 24 C -0.193 4.193 25 C 0.078 3.922 26 O -0.243 6.243 27 C -0.039 4.039 28 C -0.137 4.137 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.190 0.810 42 H 0.191 0.809 43 H 0.181 0.819 44 H 0.100 0.900 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.871 -28.993 10.272 35.573 hybrid contribution 1.703 0.133 -1.024 1.992 sum -16.167 -28.860 9.247 34.348 Atomic orbital electron populations 1.22793 0.76721 1.05437 1.04054 1.47762 1.08807 1.04614 1.72566 1.21278 0.98101 0.84736 0.95920 1.22245 0.98892 0.88457 0.97819 1.60071 1.28092 1.29621 1.12654 1.21537 1.00618 0.93129 0.91439 1.20748 0.84258 0.88521 0.83939 1.90487 1.60659 1.68712 1.30924 1.41921 1.50290 1.21208 1.07447 1.19696 1.33144 0.99389 0.94276 0.90212 1.26098 0.98419 1.02974 0.93921 1.69673 1.47107 1.41362 0.97952 0.84882 0.78170 0.76943 0.78046 1.19676 1.19333 1.19671 1.18771 0.86682 0.84821 0.75694 1.90780 1.16087 1.87939 1.51431 1.19258 0.98742 0.92786 1.07959 1.21889 0.90208 1.00139 0.95960 1.21488 1.02157 0.91513 1.01292 1.20986 0.91843 1.00526 0.92650 1.21187 0.97914 0.95190 1.04992 1.19890 0.86048 0.94946 0.91276 1.86890 1.35806 1.30245 1.71383 1.24220 0.98267 0.76915 1.04482 1.21864 0.91213 0.98847 1.01731 0.89154 0.89691 0.88155 0.87180 0.91998 0.97045 0.89161 0.83902 0.92437 0.87209 0.76966 0.91218 0.81036 0.80863 0.81891 0.90037 0.85817 0.86189 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 8.84 127.77 1.13 1.71 16 2 N -0.61 -13.57 2.87 -850.54 -2.44 -16.02 16 3 C 0.12 3.15 5.73 86.38 0.50 3.65 16 4 C 0.06 1.61 6.01 86.30 0.52 2.13 16 5 N -0.67 -23.82 6.13 -517.94 -3.17 -27.00 16 6 C 0.07 2.48 6.17 85.56 0.53 3.00 16 7 C 0.44 22.10 7.82 87.66 0.69 22.79 16 8 O -0.62 -36.09 15.78 -3.06 -0.05 -36.14 16 9 N -0.57 -30.69 5.29 -306.97 -1.62 -32.31 16 10 C -0.34 -19.70 9.68 84.04 0.81 -18.88 16 11 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 12 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 13 N -0.92 -50.88 13.05 21.66 0.28 -50.60 16 14 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 C 0.55 15.98 7.39 86.70 0.64 16.62 16 19 O -0.58 -22.90 16.06 -1.64 -0.03 -22.93 16 20 C -0.18 -4.17 5.45 -19.93 -0.11 -4.28 16 21 C -0.06 -0.81 7.37 22.47 0.17 -0.64 16 22 C -0.15 -1.13 10.05 22.26 0.22 -0.90 16 23 C -0.04 -0.38 10.02 22.23 0.22 -0.16 16 24 C -0.19 -2.90 6.27 -19.53 -0.12 -3.02 16 25 C 0.13 2.99 6.69 23.01 0.15 3.14 16 26 O -0.33 -9.10 10.66 -89.66 -0.96 -10.06 16 27 C 0.04 0.55 8.01 72.56 0.58 1.13 16 28 C -0.10 -1.01 7.12 30.74 0.22 -0.79 16 29 H 0.09 0.58 7.53 -2.39 -0.02 0.56 16 30 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.10 0.95 4.65 -2.39 -0.01 0.94 16 32 H 0.11 2.37 8.07 -2.38 -0.02 2.35 16 33 H 0.06 1.91 7.36 -2.39 -0.02 1.89 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.34 13.14 8.43 -89.70 -0.76 12.38 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 39 H 0.40 20.21 7.90 -92.71 -0.73 19.48 16 40 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.17 1.22 5.02 -2.91 -0.01 1.20 16 42 H 0.17 0.03 8.06 -2.91 -0.02 0.01 16 43 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -86.20 392.62 0.19 -86.01 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.46 Total: 37.87 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 6.61 Total: 25.17 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -6.96 Total: -125.93 kcal Atomic # 8 Polarization: -68.10 SS G_CDS: -1.03 Total: -69.13 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -86.20 0.19 -86.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714761241.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.558 kcal (2) G-P(sol) polarization free energy of solvation -86.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds