Wall clock time and date at job start Wed Apr 1 2020 04:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99998 * 2 1 4 4 C 1.52997 * 109.47195 * 89.99954 * 3 2 1 5 5 H 1.09002 * 109.47153 * 304.99547 * 4 3 2 6 6 O 1.42898 * 109.47319 * 64.99855 * 4 3 2 7 7 C 1.53002 * 109.46817 * 184.99778 * 4 3 2 8 8 N 1.46507 * 109.46688 * 179.97438 * 7 4 3 9 9 C 1.36939 * 119.99805 * 179.97438 * 8 7 4 10 10 H 1.07998 * 119.99740 * 359.97438 * 9 8 7 11 11 C 1.38803 * 120.00124 * 180.02562 * 9 8 7 12 12 N 1.31627 * 119.99972 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00328 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46921 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47591 * 119.99839 * 13 11 9 16 16 H 1.48502 * 109.47230 * 239.99863 * 13 11 9 17 17 C 1.34775 * 119.99429 * 179.97438 * 2 1 3 18 18 O 1.21286 * 119.99724 * 180.02562 * 17 2 1 19 19 C 1.50696 * 120.00348 * 0.02562 * 17 2 1 20 20 H 1.09004 * 109.46119 * 299.97357 * 19 17 2 21 21 C 1.52904 * 109.46479 * 59.93856 * 19 17 2 22 22 C 1.50469 * 109.92828 * 71.48795 * 21 19 17 23 23 O 1.21288 * 119.60855 * 215.19092 * 22 21 19 24 24 N 1.34556 * 120.77162 * 35.14578 * 22 21 19 25 25 C 1.39824 * 120.45799 * 359.20493 * 24 22 21 26 26 C 1.38860 * 120.19067 * 161.52819 * 25 24 22 27 27 C 1.38113 * 119.89074 * 180.02562 * 26 25 24 28 28 C 1.38301 * 120.09181 * 359.93951 * 27 26 25 29 29 C 1.38289 * 120.14587 * 0.02562 * 28 27 26 30 30 C 1.38087 * 120.02573 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.46608 * 89.99878 * 1 2 3 32 32 H 1.08991 * 109.47591 * 210.00140 * 1 2 3 33 33 H 1.09005 * 109.47058 * 330.00641 * 1 2 3 34 34 H 1.09001 * 109.47117 * 329.99290 * 3 2 1 35 35 H 1.09004 * 109.46581 * 209.99943 * 3 2 1 36 36 H 0.96698 * 113.99898 * 59.99520 * 6 4 3 37 37 H 1.09002 * 109.47075 * 299.99262 * 7 4 3 38 38 H 1.08996 * 109.47407 * 60.00219 * 7 4 3 39 39 H 0.96997 * 119.99878 * 359.97438 * 8 7 4 40 40 H 0.96998 * 119.99532 * 180.02562 * 12 11 9 41 41 H 1.08998 * 109.39693 * 191.58600 * 21 19 17 42 42 H 1.09001 * 109.39831 * 311.31660 * 21 19 17 43 43 H 0.97007 * 119.77398 * 179.18708 * 24 22 21 44 44 H 1.07999 * 120.05431 * 359.97438 * 26 25 24 45 45 H 1.08002 * 119.95385 * 179.97438 * 27 26 25 46 46 H 1.08000 * 119.92862 * 180.02562 * 28 27 26 47 47 H 1.08004 * 119.98267 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 1.5062 1.7550 1.9815 6 8 3.3209 0.7725 2.0814 7 6 3.1061 3.0938 1.4442 8 7 3.3497 3.5170 2.8255 9 6 3.9317 4.7307 3.0772 10 1 4.2114 5.3758 2.2574 11 6 4.1630 5.1315 4.3858 12 7 3.8234 4.3446 5.3849 13 14 4.9562 6.7875 4.7292 14 1 5.2408 7.4759 3.4445 15 1 4.0336 7.6191 5.5432 16 1 6.2253 6.5838 5.4729 17 6 2.1388 -1.1673 0.0005 18 8 3.3517 -1.1673 0.0010 19 6 1.3853 -2.4723 0.0005 20 1 0.7587 -2.5298 0.8906 21 6 0.5056 -2.5527 -1.2475 22 6 1.3631 -2.7562 -2.4671 23 8 1.0429 -2.2410 -3.5175 24 7 2.4813 -3.5021 -2.4059 25 6 2.8762 -4.0896 -1.2000 26 6 3.7793 -5.1443 -1.2000 27 6 4.1648 -5.7204 -0.0053 28 6 3.6535 -5.2473 1.1894 29 6 2.7544 -4.1966 1.1925 30 6 2.3645 -3.6173 0.0012 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8901 0.5138 34 1 1.6085 2.0283 -0.5139 35 1 3.1500 1.1383 -0.5139 36 1 4.1836 0.6810 1.6542 37 1 4.0525 3.0492 0.9053 38 1 2.4438 3.8092 0.9569 39 1 3.0988 2.9374 3.5617 40 1 3.9848 4.6249 6.2993 41 1 -0.1868 -3.3887 -1.1491 42 1 -0.0596 -1.6266 -1.3523 43 1 3.0170 -3.6335 -3.2038 44 1 4.1791 -5.5142 -2.1326 45 1 4.8668 -6.5411 -0.0041 46 1 3.9570 -5.6994 2.1221 47 1 2.3564 -3.8295 2.1270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717922930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:08 Heat of formation + Delta-G solvation = -68.925065 kcal Electronic energy + Delta-G solvation = -31084.748424 eV Core-core repulsion = 26847.079735 eV Total energy + Delta-G solvation = -4237.668690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.74138 -39.70196 -38.94509 -37.28971 -35.55440 -35.43523 -34.30383 -33.90810 -31.30022 -30.57603 -29.72860 -29.27863 -27.17164 -26.26465 -24.74270 -23.32301 -22.98230 -22.56486 -21.15081 -20.28872 -19.06738 -18.27525 -17.66938 -17.15796 -16.99644 -16.74231 -16.32717 -15.86341 -15.48151 -15.19651 -14.94902 -14.71917 -14.69096 -14.40448 -14.12436 -13.88607 -13.71768 -13.54760 -13.44010 -12.97195 -12.82242 -12.75170 -12.54183 -12.35000 -12.22609 -12.03807 -11.57817 -11.50706 -11.38457 -10.97746 -10.91464 -10.82104 -10.64285 -10.39990 -10.10512 -9.91034 -9.75594 -9.60178 -9.12323 -8.88288 -8.52923 -8.33149 -6.89736 -5.73159 -3.02435 0.88517 1.03979 2.20125 2.53060 2.68138 2.84832 3.44651 3.49830 3.51435 3.52471 3.91006 4.05784 4.26702 4.36240 4.48163 4.59010 4.71429 4.78258 4.86391 4.93095 4.96400 5.03852 5.05367 5.10551 5.16980 5.24711 5.35181 5.40571 5.54517 5.56024 5.63058 5.68024 5.74814 5.80686 6.02591 6.07841 6.24505 6.25481 6.33999 6.41096 6.54363 6.55022 6.75831 6.84618 7.25678 7.61912 7.71154 8.10347 8.22201 8.45359 9.56670 10.14825 10.50826 11.49289 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.002474 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.082968 B =11315.059305 C =12286.777046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.608 5.608 3 C 0.085 3.915 4 C 0.088 3.912 5 H 0.095 0.905 6 O -0.546 6.546 7 C 0.125 3.875 8 N -0.725 5.725 9 C -0.241 4.241 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.520 3.480 18 O -0.515 6.515 19 C -0.064 4.064 20 H 0.122 0.878 21 C -0.148 4.148 22 C 0.523 3.477 23 O -0.526 6.526 24 N -0.660 5.660 25 C 0.171 3.829 26 C -0.154 4.154 27 C -0.086 4.086 28 C -0.139 4.139 29 C -0.067 4.067 30 C -0.099 4.099 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.374 0.626 37 H 0.020 0.980 38 H 0.024 0.976 39 H 0.389 0.611 40 H 0.254 0.746 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.411 0.589 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.356 -23.140 -14.232 28.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.341 5.341 3 C -0.038 4.038 4 C 0.027 3.973 5 H 0.113 0.887 6 O -0.351 6.351 7 C -0.004 4.004 8 N -0.370 5.370 9 C -0.372 4.372 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.218 1.218 17 C 0.307 3.693 18 O -0.389 6.389 19 C -0.086 4.086 20 H 0.140 0.860 21 C -0.187 4.187 22 C 0.311 3.689 23 O -0.401 6.401 24 N -0.304 5.304 25 C 0.075 3.925 26 C -0.175 4.175 27 C -0.104 4.104 28 C -0.158 4.158 29 C -0.086 4.086 30 C -0.102 4.102 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.221 0.779 37 H 0.038 0.962 38 H 0.042 0.958 39 H 0.223 0.777 40 H 0.064 0.936 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.249 0.751 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.478 -22.666 -14.338 28.128 hybrid contribution 1.027 0.863 -0.154 1.350 sum -7.451 -21.802 -14.492 27.219 Atomic orbital electron populations 1.22039 0.79850 1.03917 1.01658 1.47655 1.06705 1.05962 1.73823 1.22286 0.98273 0.84415 0.98799 1.22465 0.94506 0.89085 0.91277 0.88728 1.86531 1.29183 1.62432 1.56962 1.21235 0.97010 0.92419 0.89700 1.42247 1.73795 1.20152 1.00790 1.19266 1.31977 0.94166 0.91821 0.91255 1.24760 1.02033 0.98603 0.95595 1.69698 1.53133 1.36785 0.98185 0.86116 0.78720 0.83596 0.77745 1.20591 1.21861 1.21844 1.20190 0.88066 0.84492 0.76566 1.90702 1.13461 1.86785 1.47948 1.20201 0.96236 0.91958 1.00183 0.85992 1.22077 0.98287 1.07399 0.90953 1.20572 0.80841 0.76901 0.90565 1.90788 1.70695 1.47082 1.31574 1.43562 1.25720 1.49872 1.11234 1.17539 0.96530 0.93583 0.84802 1.20719 1.00646 0.96824 0.99309 1.20977 0.98529 0.99142 0.91773 1.21104 0.98427 0.97955 0.98347 1.20865 0.96171 0.94804 0.96712 1.18844 1.01367 0.97652 0.92297 0.92001 0.90802 0.90223 0.89567 0.89563 0.77870 0.96222 0.95809 0.77667 0.93580 0.86641 0.85836 0.75086 0.85507 0.85453 0.85503 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 8.81 59.85 0.53 1.05 16 2 N -0.61 -7.04 2.86 -181.57 -0.52 -7.56 16 3 C 0.09 1.13 5.11 -4.04 -0.02 1.11 16 4 C 0.09 1.45 3.30 -26.73 -0.09 1.36 16 5 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 6 O -0.55 -10.28 11.95 -43.03 -0.51 -10.79 16 7 C 0.13 2.53 5.92 -4.04 -0.02 2.50 16 8 N -0.73 -18.97 5.49 -59.91 -0.33 -19.30 16 9 C -0.24 -6.92 9.99 -15.06 -0.15 -7.08 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -28.87 13.06 55.49 0.72 -28.14 16 13 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 C 0.52 6.68 6.35 -10.99 -0.07 6.61 16 18 O -0.51 -8.47 14.59 -2.25 -0.03 -8.50 16 19 C -0.06 -0.59 1.95 -92.99 -0.18 -0.77 16 20 H 0.12 0.83 7.32 -51.93 -0.38 0.45 16 21 C -0.15 -1.16 5.12 -28.04 -0.14 -1.30 16 22 C 0.52 5.74 7.37 -11.20 -0.08 5.66 16 23 O -0.53 -7.44 17.91 5.55 0.10 -7.34 16 24 N -0.66 -6.47 5.36 -10.02 -0.05 -6.52 16 25 C 0.17 1.68 6.50 -83.76 -0.54 1.13 16 26 C -0.15 -1.27 9.92 -39.40 -0.39 -1.66 16 27 C -0.09 -0.65 10.04 -39.60 -0.40 -1.05 16 28 C -0.14 -1.15 10.04 -39.54 -0.40 -1.55 16 29 C -0.07 -0.62 9.69 -39.62 -0.38 -1.01 16 30 C -0.10 -0.99 4.15 -104.47 -0.43 -1.42 16 31 H 0.06 0.39 6.78 -51.93 -0.35 0.04 16 32 H 0.07 0.40 6.11 -51.93 -0.32 0.08 16 33 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.09 0.96 8.07 -51.93 -0.42 0.55 16 35 H 0.09 1.25 7.42 -51.93 -0.39 0.87 16 36 H 0.37 6.74 8.74 45.56 0.40 7.14 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.39 10.95 7.54 -40.82 -0.31 10.64 16 40 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.12 0.86 4.42 -51.93 -0.23 0.63 16 43 H 0.41 3.45 8.83 -40.82 -0.36 3.09 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 46 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -37.97 386.12 -8.41 -46.38 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -5.70 Total: 15.10 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.88 Total: 3.08 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.18 Total: -61.53 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.45 Total: -26.64 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.97 -8.41 -46.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717922930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.546 kcal (2) G-P(sol) polarization free energy of solvation -37.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds