Wall clock time and date at job start Wed Apr 1 2020 04:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99998 * 2 1 4 4 C 1.52997 * 109.47195 * 89.99954 * 3 2 1 5 5 H 1.09002 * 109.47153 * 304.99547 * 4 3 2 6 6 O 1.42898 * 109.47319 * 64.99855 * 4 3 2 7 7 C 1.53002 * 109.46817 * 184.99778 * 4 3 2 8 8 N 1.46507 * 109.46688 * 179.97438 * 7 4 3 9 9 C 1.36939 * 119.99805 * 179.97438 * 8 7 4 10 10 H 1.07998 * 119.99740 * 359.97438 * 9 8 7 11 11 C 1.38803 * 120.00124 * 180.02562 * 9 8 7 12 12 N 1.31627 * 119.99972 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00328 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46921 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47591 * 119.99839 * 13 11 9 16 16 H 1.48502 * 109.47230 * 239.99863 * 13 11 9 17 17 C 1.34775 * 119.99429 * 179.97438 * 2 1 3 18 18 O 1.21286 * 119.99724 * 180.02562 * 17 2 1 19 19 C 1.50696 * 120.00348 * 0.02562 * 17 2 1 20 20 H 1.09004 * 109.46119 * 299.97357 * 19 17 2 21 21 C 1.52904 * 109.46479 * 59.93856 * 19 17 2 22 22 C 1.50469 * 109.92828 * 71.48795 * 21 19 17 23 23 O 1.21288 * 119.60855 * 215.19092 * 22 21 19 24 24 N 1.34556 * 120.77162 * 35.14578 * 22 21 19 25 25 C 1.39824 * 120.45799 * 359.20493 * 24 22 21 26 26 C 1.38860 * 120.19067 * 161.52819 * 25 24 22 27 27 C 1.38113 * 119.89074 * 180.02562 * 26 25 24 28 28 C 1.38301 * 120.09181 * 359.93951 * 27 26 25 29 29 C 1.38289 * 120.14587 * 0.02562 * 28 27 26 30 30 C 1.38087 * 120.02573 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.46608 * 89.99878 * 1 2 3 32 32 H 1.08991 * 109.47591 * 210.00140 * 1 2 3 33 33 H 1.09005 * 109.47058 * 330.00641 * 1 2 3 34 34 H 1.09001 * 109.47117 * 329.99290 * 3 2 1 35 35 H 1.09004 * 109.46581 * 209.99943 * 3 2 1 36 36 H 0.96698 * 113.99898 * 59.99520 * 6 4 3 37 37 H 1.09002 * 109.47075 * 299.99262 * 7 4 3 38 38 H 1.08996 * 109.47407 * 60.00219 * 7 4 3 39 39 H 0.96997 * 119.99878 * 359.97438 * 8 7 4 40 40 H 0.96998 * 119.99532 * 180.02562 * 12 11 9 41 41 H 1.08998 * 109.39693 * 191.58600 * 21 19 17 42 42 H 1.09001 * 109.39831 * 311.31660 * 21 19 17 43 43 H 0.97007 * 119.77398 * 179.18708 * 24 22 21 44 44 H 1.07999 * 120.05431 * 359.97438 * 26 25 24 45 45 H 1.08002 * 119.95385 * 179.97438 * 27 26 25 46 46 H 1.08000 * 119.92862 * 180.02562 * 28 27 26 47 47 H 1.08004 * 119.98267 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 1.5062 1.7550 1.9815 6 8 3.3209 0.7725 2.0814 7 6 3.1061 3.0938 1.4442 8 7 3.3497 3.5170 2.8255 9 6 3.9317 4.7307 3.0772 10 1 4.2114 5.3758 2.2574 11 6 4.1630 5.1315 4.3858 12 7 3.8234 4.3446 5.3849 13 14 4.9562 6.7875 4.7292 14 1 5.2408 7.4759 3.4445 15 1 4.0336 7.6191 5.5432 16 1 6.2253 6.5838 5.4729 17 6 2.1388 -1.1673 0.0005 18 8 3.3517 -1.1673 0.0010 19 6 1.3853 -2.4723 0.0005 20 1 0.7587 -2.5298 0.8906 21 6 0.5056 -2.5527 -1.2475 22 6 1.3631 -2.7562 -2.4671 23 8 1.0429 -2.2410 -3.5175 24 7 2.4813 -3.5021 -2.4059 25 6 2.8762 -4.0896 -1.2000 26 6 3.7793 -5.1443 -1.2000 27 6 4.1648 -5.7204 -0.0053 28 6 3.6535 -5.2473 1.1894 29 6 2.7544 -4.1966 1.1925 30 6 2.3645 -3.6173 0.0012 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8901 0.5138 34 1 1.6085 2.0283 -0.5139 35 1 3.1500 1.1383 -0.5139 36 1 4.1836 0.6810 1.6542 37 1 4.0525 3.0492 0.9053 38 1 2.4438 3.8092 0.9569 39 1 3.0988 2.9374 3.5617 40 1 3.9848 4.6249 6.2993 41 1 -0.1868 -3.3887 -1.1491 42 1 -0.0596 -1.6266 -1.3523 43 1 3.0170 -3.6335 -3.2038 44 1 4.1791 -5.5142 -2.1326 45 1 4.8668 -6.5411 -0.0041 46 1 3.9570 -5.6994 2.1221 47 1 2.3564 -3.8295 2.1270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717922930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:06 Heat of formation + Delta-G solvation = -98.314818 kcal Electronic energy + Delta-G solvation = -31086.022859 eV Core-core repulsion = 26847.079735 eV Total energy + Delta-G solvation = -4238.943125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.49799 -40.65465 -39.69426 -38.65879 -36.52052 -36.27374 -35.89928 -34.99745 -33.19853 -31.42437 -30.61776 -30.34263 -28.03311 -27.50419 -25.94434 -24.53816 -23.80399 -23.60448 -22.65195 -21.15146 -19.84148 -19.24780 -18.97533 -18.49151 -17.89430 -17.77578 -17.31199 -16.82424 -16.54075 -16.34768 -16.33476 -15.84793 -15.71849 -15.42119 -15.23884 -14.99510 -14.74891 -14.55495 -14.31875 -14.13487 -14.12158 -13.71420 -13.52173 -13.43645 -13.19896 -12.97827 -12.86939 -12.78572 -12.59154 -12.19284 -12.15242 -12.06703 -11.99900 -11.83051 -11.71449 -11.21617 -11.14702 -10.99938 -10.75910 -9.78272 -9.55578 -9.02805 -9.02547 -7.95928 -5.25905 0.19856 0.39502 1.44371 1.45749 1.47361 1.57297 1.61362 1.94421 2.02912 2.54443 2.84854 3.23919 3.34837 3.36424 3.47158 3.61334 3.68576 3.78708 3.86078 4.06341 4.14915 4.18126 4.25515 4.36355 4.38892 4.46311 4.47285 4.48840 4.56653 4.60388 4.65170 4.77279 4.80999 4.89863 4.98238 5.03493 5.17502 5.23102 5.43042 5.45454 5.48359 5.62379 5.64735 5.89914 6.15192 6.25058 6.38122 6.78186 6.85775 7.18516 7.31614 8.07432 8.30905 9.27577 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.002474 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.082968 B =11315.059305 C =12286.777046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.609 5.609 3 C 0.096 3.904 4 C 0.100 3.900 5 H 0.094 0.906 6 O -0.562 6.562 7 C 0.123 3.877 8 N -0.740 5.740 9 C -0.248 4.248 10 H 0.076 0.924 11 C -0.077 4.077 12 N -0.968 5.968 13 Si 0.976 3.024 14 H -0.265 1.265 15 H -0.290 1.290 16 H -0.294 1.294 17 C 0.510 3.490 18 O -0.561 6.561 19 C -0.057 4.057 20 H 0.150 0.850 21 C -0.141 4.141 22 C 0.515 3.485 23 O -0.568 6.568 24 N -0.658 5.658 25 C 0.152 3.848 26 C -0.158 4.158 27 C -0.088 4.088 28 C -0.146 4.146 29 C -0.082 4.082 30 C -0.114 4.114 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.374 0.626 37 H 0.018 0.982 38 H 0.039 0.961 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.148 0.852 42 H 0.135 0.865 43 H 0.413 0.587 44 H 0.146 0.854 45 H 0.153 0.847 46 H 0.144 0.856 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 -23.760 -14.771 29.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.341 5.341 3 C -0.028 4.028 4 C 0.039 3.961 5 H 0.112 0.888 6 O -0.367 6.367 7 C -0.005 4.005 8 N -0.383 5.383 9 C -0.379 4.379 10 H 0.094 0.906 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.805 3.195 14 H -0.190 1.190 15 H -0.217 1.217 16 H -0.221 1.221 17 C 0.298 3.702 18 O -0.438 6.438 19 C -0.078 4.078 20 H 0.168 0.832 21 C -0.180 4.180 22 C 0.305 3.695 23 O -0.447 6.447 24 N -0.301 5.301 25 C 0.056 3.944 26 C -0.179 4.179 27 C -0.107 4.107 28 C -0.164 4.164 29 C -0.101 4.101 30 C -0.117 4.117 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.222 0.778 37 H 0.036 0.964 38 H 0.057 0.943 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.166 0.834 42 H 0.153 0.847 43 H 0.252 0.748 44 H 0.163 0.837 45 H 0.170 0.830 46 H 0.162 0.838 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.475 -23.301 -14.914 29.243 hybrid contribution 1.368 0.978 -0.021 1.682 sum -8.107 -22.323 -14.935 28.055 Atomic orbital electron populations 1.22377 0.77194 1.05570 1.03278 1.47776 1.08360 1.04948 1.73029 1.22022 0.98588 0.86117 0.96102 1.22380 0.93452 0.86815 0.93419 0.88769 1.86504 1.29534 1.62858 1.57851 1.21438 0.97459 0.94831 0.86749 1.42448 1.73719 1.19399 1.02730 1.19684 1.31095 0.95028 0.92121 0.90618 1.25630 1.03358 1.02429 0.95523 1.69860 1.54918 1.38791 0.98336 0.85034 0.77297 0.79274 0.77891 1.18979 1.21712 1.22123 1.20928 0.87883 0.85841 0.75504 1.90675 1.15555 1.87554 1.50046 1.20232 0.96173 0.89498 1.01912 0.83244 1.22159 0.97879 1.09339 0.88627 1.21171 0.81095 0.76225 0.91025 1.90764 1.71798 1.48899 1.33205 1.43583 1.25533 1.49459 1.11546 1.17766 0.97474 0.94445 0.84673 1.21041 0.99991 0.96302 1.00528 1.21327 0.98522 0.99539 0.91289 1.21424 0.97917 0.97622 0.99459 1.21081 0.96775 0.95395 0.96846 1.19034 1.01975 0.98067 0.92593 0.90331 0.88259 0.89639 0.87056 0.91161 0.77842 0.96361 0.94284 0.79269 0.93991 0.83380 0.84713 0.74841 0.83667 0.82953 0.83803 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 8.81 127.77 1.13 1.83 16 2 N -0.61 -13.15 2.86 -846.75 -2.42 -15.57 16 3 C 0.10 2.44 5.11 86.38 0.44 2.88 16 4 C 0.10 3.27 3.30 30.59 0.10 3.37 16 5 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 6 O -0.56 -21.43 11.95 -141.52 -1.69 -23.12 16 7 C 0.12 4.90 5.92 86.38 0.51 5.42 16 8 N -0.74 -38.98 5.49 -343.44 -1.89 -40.87 16 9 C -0.25 -14.20 9.99 84.03 0.84 -13.37 16 10 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 11 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 12 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 13 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 16 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 17 C 0.51 12.63 6.35 87.66 0.56 13.18 16 18 O -0.56 -18.66 14.59 4.41 0.06 -18.60 16 19 C -0.06 -0.94 1.95 -12.33 -0.02 -0.97 16 20 H 0.15 1.58 7.32 -2.38 -0.02 1.57 16 21 C -0.14 -1.89 5.12 29.74 0.15 -1.73 16 22 C 0.51 10.91 7.37 87.62 0.65 11.55 16 23 O -0.57 -15.99 17.91 -3.05 -0.05 -16.05 16 24 N -0.66 -12.67 5.36 -304.12 -1.63 -14.30 16 25 C 0.15 2.85 6.50 38.16 0.25 3.10 16 26 C -0.16 -2.40 9.92 22.39 0.22 -2.18 16 27 C -0.09 -1.20 10.04 22.26 0.22 -0.97 16 28 C -0.15 -2.19 10.04 22.30 0.22 -1.97 16 29 C -0.08 -1.45 9.69 22.25 0.22 -1.23 16 30 C -0.11 -2.16 4.15 -19.77 -0.08 -2.24 16 31 H 0.08 0.75 6.78 -2.39 -0.02 0.73 16 32 H 0.10 0.72 6.11 -2.39 -0.01 0.70 16 33 H 0.08 0.99 8.07 -2.38 -0.02 0.97 16 34 H 0.11 2.26 8.07 -2.39 -0.02 2.24 16 35 H 0.07 2.04 7.42 -2.39 -0.02 2.02 16 36 H 0.37 13.96 8.74 -74.06 -0.65 13.31 16 37 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.38 21.53 7.54 -92.71 -0.70 20.83 16 40 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.14 1.49 4.42 -2.39 -0.01 1.48 16 43 H 0.41 7.01 8.83 -92.70 -0.82 6.19 16 44 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 46 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 47 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -83.65 386.12 -0.57 -84.22 By element: Atomic # 1 Polarization: 44.52 SS G_CDS: -1.13 Total: 43.39 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 5.87 Total: 12.59 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.65 Total: -131.45 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -1.68 Total: -57.77 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -83.65 -0.57 -84.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717922930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.098 kcal (2) G-P(sol) polarization free energy of solvation -83.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds