Wall clock time and date at job start Wed Apr 1 2020 04:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35840 * 116.99747 * 2 1 4 4 C 1.39471 * 119.74219 * 359.97438 * 3 2 1 5 5 C 1.36298 * 120.56024 * 179.97438 * 4 3 2 6 6 C 1.40197 * 119.90508 * 0.02562 * 5 4 3 7 7 C 1.41522 * 133.26440 * 180.02562 * 6 5 4 8 8 C 1.35925 * 107.75541 * 179.97438 * 7 6 5 9 9 C 1.46917 * 125.43930 * 179.97438 * 8 7 6 10 10 O 1.21665 * 120.00336 * 2.68666 * 9 8 7 11 11 N 1.34779 * 119.99850 * 182.68225 * 9 8 7 12 12 C 1.46499 * 119.99790 * 353.02543 * 11 9 8 13 13 C 1.46495 * 120.00221 * 173.02574 * 11 9 8 14 14 C 1.52998 * 109.47189 * 89.99728 * 13 11 9 15 15 H 1.09009 * 109.46991 * 60.00604 * 14 13 11 16 16 O 1.42898 * 109.47561 * 300.00729 * 14 13 11 17 17 C 1.53005 * 109.47422 * 179.97438 * 14 13 11 18 18 N 1.46497 * 109.47182 * 185.00235 * 17 14 13 19 19 C 1.36941 * 119.99649 * 179.72781 * 18 17 14 20 20 H 1.07995 * 119.99785 * 0.27248 * 19 18 17 21 21 C 1.38818 * 119.99726 * 180.27962 * 19 18 17 22 22 N 1.31616 * 120.00083 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99829 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47287 * 59.99375 * 23 21 19 25 25 H 1.48494 * 109.47288 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46907 * 299.99570 * 23 21 19 27 27 N 1.38310 * 109.11195 * 0.22341 * 8 7 6 28 28 H 0.97005 * 125.62273 * 179.77167 * 27 8 7 29 29 C 1.37521 * 108.74679 * 359.62875 * 27 8 7 30 30 C 1.38215 * 119.73784 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46510 * 299.99261 * 1 2 3 32 32 H 1.08995 * 109.47260 * 59.99454 * 1 2 3 33 33 H 1.08993 * 109.46707 * 179.97438 * 1 2 3 34 34 H 1.08001 * 119.71900 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.05230 * 180.02562 * 5 4 3 36 36 H 1.07993 * 126.11810 * 359.97330 * 7 6 5 37 37 H 1.09003 * 109.47593 * 297.63780 * 12 11 9 38 38 H 1.09004 * 109.47277 * 57.64186 * 12 11 9 39 39 H 1.09004 * 109.47052 * 177.63260 * 12 11 9 40 40 H 1.09007 * 109.46953 * 330.00577 * 13 11 9 41 41 H 1.08992 * 109.47232 * 210.00241 * 13 11 9 42 42 H 0.96705 * 113.99775 * 299.99781 * 16 14 13 43 43 H 1.09001 * 109.46181 * 65.00364 * 17 14 13 44 44 H 1.08996 * 109.46983 * 305.00449 * 17 14 13 45 45 H 0.96997 * 120.00466 * 0.02562 * 18 17 14 46 46 H 0.96994 * 119.99920 * 179.97438 * 22 21 19 47 47 H 1.08001 * 120.11679 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2808 2.3766 -0.0005 5 6 1.8821 3.5998 0.0000 6 6 3.2811 3.6909 0.0005 7 6 4.1821 4.7823 0.0016 8 6 5.4443 4.2779 0.0022 9 6 6.6795 5.0732 0.0029 10 8 6.6212 6.2875 0.0522 11 7 7.8773 4.4577 -0.0511 12 6 7.9556 2.9979 0.0437 13 6 9.1010 5.2485 -0.2046 14 6 9.6426 5.6231 1.1764 15 1 9.8646 4.7157 1.7381 16 8 8.6641 6.3912 1.8796 17 6 10.9210 6.4485 1.0161 18 7 11.5046 6.7058 2.3350 19 6 12.6644 7.4262 2.4417 20 1 13.1462 7.8083 1.5539 21 6 13.2206 7.6650 3.6909 22 7 12.6330 7.1996 4.7728 23 14 14.8021 8.6483 3.8366 24 1 14.5952 10.0054 3.2704 25 1 15.1842 8.7621 5.2670 26 1 15.8839 7.9594 3.0880 27 7 5.3798 2.8963 -0.0035 28 1 6.1411 2.2951 -0.0074 29 6 4.0584 2.5154 0.0006 30 6 3.4263 1.2764 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 -1.0276 -0.0005 34 1 0.2029 2.3099 -0.0005 35 1 1.2818 4.4976 0.0000 36 1 3.9145 5.8285 0.0018 37 1 7.5736 2.6756 1.0124 38 1 7.3579 2.5496 -0.7501 39 1 8.9937 2.6822 -0.0609 40 1 8.8791 6.1560 -0.7662 41 1 9.8473 4.6626 -0.7409 42 1 8.4179 7.2148 1.4366 43 1 10.6833 7.3961 0.5328 44 1 11.6349 5.8974 0.4041 45 1 11.0720 6.3622 3.1322 46 1 13.0218 7.3662 5.6456 47 1 4.0123 0.3692 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755784257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:59 Heat of formation + Delta-G solvation = -21.096787 kcal Electronic energy + Delta-G solvation = -29616.888441 eV Core-core repulsion = 25381.293741 eV Total energy + Delta-G solvation = -4235.594700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97110 -40.12589 -39.31604 -37.25337 -36.17201 -35.39204 -33.96463 -32.39211 -31.35584 -30.36956 -29.64528 -28.82556 -27.57285 -27.01524 -25.70505 -23.87631 -22.60859 -22.02528 -21.27800 -21.00116 -20.11008 -18.65138 -17.79841 -17.14203 -16.92002 -16.45452 -16.16576 -16.07404 -15.91346 -15.74386 -15.13634 -14.91768 -14.51690 -14.34710 -14.09016 -14.03687 -13.77296 -13.58354 -13.43906 -13.33757 -12.96485 -12.64690 -12.61226 -12.41947 -12.33162 -12.16453 -12.11065 -11.52248 -11.11588 -11.11273 -10.92727 -10.78720 -10.69529 -10.20497 -10.17334 -9.89595 -9.76324 -9.64778 -8.87305 -8.65535 -8.50815 -7.80768 -6.90147 -5.72771 -3.02322 0.53614 1.26097 1.89733 2.44082 2.73599 3.14458 3.21021 3.45592 3.49682 3.51216 3.55309 4.18665 4.34126 4.53653 4.60368 4.60593 4.65929 4.74393 4.79761 4.83767 4.87813 5.00063 5.04982 5.07284 5.10237 5.15713 5.20125 5.30698 5.52734 5.55767 5.62382 5.63055 5.70273 5.92777 5.97173 6.05465 6.12666 6.21797 6.33622 6.39263 6.52917 6.61463 6.74876 7.01152 7.08693 7.15373 7.70107 7.97320 8.25079 8.45481 9.56550 10.14672 10.50177 11.49552 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.001735 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.146761 B =16138.416927 C =16248.142227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.154 3.846 4 C -0.226 4.226 5 C -0.018 4.018 6 C -0.150 4.150 7 C -0.097 4.097 8 C 0.015 3.985 9 C 0.589 3.411 10 O -0.510 6.510 11 N -0.607 5.607 12 C 0.061 3.939 13 C 0.086 3.914 14 C 0.086 3.914 15 H 0.095 0.905 16 O -0.546 6.546 17 C 0.126 3.874 18 N -0.725 5.725 19 C -0.244 4.244 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 N -0.585 5.585 28 H 0.422 0.578 29 C 0.146 3.854 30 C -0.177 4.177 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.156 0.844 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.375 0.625 43 H 0.022 0.978 44 H 0.024 0.976 45 H 0.388 0.612 46 H 0.256 0.744 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.957 -16.169 -14.586 33.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.108 3.892 4 C -0.246 4.246 5 C -0.037 4.037 6 C -0.155 4.155 7 C -0.123 4.123 8 C -0.093 4.093 9 C 0.377 3.623 10 O -0.385 6.385 11 N -0.340 5.340 12 C -0.082 4.082 13 C -0.037 4.037 14 C 0.025 3.975 15 H 0.113 0.887 16 O -0.351 6.351 17 C -0.003 4.003 18 N -0.370 5.370 19 C -0.375 4.375 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 N -0.199 5.199 28 H 0.271 0.729 29 C 0.034 3.966 30 C -0.199 4.199 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.174 0.826 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.223 0.777 43 H 0.039 0.961 44 H 0.041 0.959 45 H 0.223 0.777 46 H 0.065 0.935 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.505 -16.150 -14.170 32.590 hybrid contribution 0.942 0.484 0.024 1.059 sum -23.563 -15.665 -14.146 31.634 Atomic orbital electron populations 1.23073 0.78137 1.03950 1.01536 1.86031 1.21533 1.26863 1.88621 1.18486 0.91203 0.84096 0.95456 1.20768 1.00017 0.92012 1.11793 1.20230 0.92167 0.97323 0.93996 1.18178 0.93470 0.92538 1.11307 1.20879 0.89387 0.99049 1.03005 1.20135 0.95376 0.81867 1.11936 1.17069 0.81582 0.86935 0.76714 1.90816 1.86095 1.12643 1.48942 1.47550 1.06512 1.06650 1.73300 1.22130 1.04530 0.80712 1.00875 1.22382 0.85119 0.97039 0.99110 1.22490 0.88500 0.95369 0.91186 0.88748 1.86554 1.59846 1.37681 1.51039 1.21240 0.92206 0.96310 0.90514 1.42232 1.27673 1.65066 1.01987 1.19181 0.99618 1.26171 0.92547 0.91309 1.24762 0.99324 1.01376 0.95429 1.69670 1.40659 1.50195 0.97298 0.86253 0.83266 0.79974 0.76579 1.21250 1.21666 1.21301 1.43277 1.06464 1.06197 1.63982 0.72948 1.17901 0.84031 0.94146 1.00500 1.18889 0.91572 0.95231 1.14236 0.92463 0.92518 0.88257 0.85225 0.85207 0.82619 0.91477 0.91930 0.88726 0.89221 0.89320 0.77689 0.96061 0.95855 0.77749 0.93451 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.80 101.05 0.99 1.11 16 2 O -0.32 -2.65 10.48 -19.24 -0.20 -2.85 16 3 C 0.15 1.41 6.68 -39.13 -0.26 1.15 16 4 C -0.23 -1.81 8.95 -39.82 -0.36 -2.17 16 5 C -0.02 -0.16 10.05 -39.54 -0.40 -0.56 16 6 C -0.15 -1.64 6.16 -106.90 -0.66 -2.30 16 7 C -0.10 -1.14 10.53 -39.16 -0.41 -1.55 16 8 C 0.02 0.18 6.73 -82.26 -0.55 -0.37 16 9 C 0.59 8.12 7.24 -12.75 -0.09 8.03 16 10 O -0.51 -8.49 14.83 -9.90 -0.15 -8.63 16 11 N -0.61 -7.07 2.83 -183.04 -0.52 -7.59 16 12 C 0.06 0.47 8.68 59.85 0.52 0.99 16 13 C 0.09 1.08 5.11 -4.05 -0.02 1.06 16 14 C 0.09 1.42 3.27 -26.73 -0.09 1.33 16 15 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 16 O -0.55 -10.43 11.95 -50.35 -0.60 -11.04 16 17 C 0.13 2.52 5.90 -4.04 -0.02 2.49 16 18 N -0.72 -18.95 5.55 -59.91 -0.33 -19.28 16 19 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16 23 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 N -0.58 -5.71 5.35 -7.35 -0.04 -5.75 16 28 H 0.42 3.06 4.36 -40.82 -0.18 2.88 16 29 C 0.15 1.53 7.25 -83.98 -0.61 0.92 16 30 C -0.18 -1.69 10.00 -39.27 -0.39 -2.09 16 31 H 0.06 0.21 7.64 -51.93 -0.40 -0.19 16 32 H 0.06 0.19 7.64 -51.93 -0.40 -0.20 16 33 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.13 0.71 6.25 -52.49 -0.33 0.38 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.07 0.51 7.42 -51.93 -0.39 0.13 16 38 H 0.06 0.36 6.00 -51.93 -0.31 0.05 16 39 H 0.09 0.58 7.78 -51.93 -0.40 0.17 16 40 H 0.09 1.17 7.53 -51.93 -0.39 0.78 16 41 H 0.09 0.88 7.90 -51.93 -0.41 0.47 16 42 H 0.38 6.76 8.26 45.56 0.38 7.13 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.39 10.98 7.67 -40.82 -0.31 10.66 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -36.55 388.10 -8.53 -45.08 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -5.64 Total: 14.29 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.60 Total: 0.43 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.16 Total: -60.88 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.95 Total: -22.52 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.55 -8.53 -45.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755784257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.984 kcal (2) G-P(sol) polarization free energy of solvation -36.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds