Wall clock time and date at job start Wed Apr 1 2020 04:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35840 * 116.99747 * 2 1 4 4 C 1.39471 * 119.74219 * 359.97438 * 3 2 1 5 5 C 1.36298 * 120.56024 * 179.97438 * 4 3 2 6 6 C 1.40197 * 119.90508 * 0.02562 * 5 4 3 7 7 C 1.41522 * 133.26440 * 180.02562 * 6 5 4 8 8 C 1.35925 * 107.75541 * 179.97438 * 7 6 5 9 9 C 1.46917 * 125.43930 * 179.97438 * 8 7 6 10 10 O 1.21665 * 120.00336 * 2.68666 * 9 8 7 11 11 N 1.34779 * 119.99850 * 182.68225 * 9 8 7 12 12 C 1.46499 * 119.99790 * 353.02543 * 11 9 8 13 13 C 1.46495 * 120.00221 * 173.02574 * 11 9 8 14 14 C 1.52998 * 109.47189 * 89.99728 * 13 11 9 15 15 H 1.09009 * 109.46991 * 60.00604 * 14 13 11 16 16 O 1.42898 * 109.47561 * 300.00729 * 14 13 11 17 17 C 1.53005 * 109.47422 * 179.97438 * 14 13 11 18 18 N 1.46497 * 109.47182 * 185.00235 * 17 14 13 19 19 C 1.36941 * 119.99649 * 179.72781 * 18 17 14 20 20 H 1.07995 * 119.99785 * 0.27248 * 19 18 17 21 21 C 1.38818 * 119.99726 * 180.27962 * 19 18 17 22 22 N 1.31616 * 120.00083 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99829 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47287 * 59.99375 * 23 21 19 25 25 H 1.48494 * 109.47288 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46907 * 299.99570 * 23 21 19 27 27 N 1.38310 * 109.11195 * 0.22341 * 8 7 6 28 28 H 0.97005 * 125.62273 * 179.77167 * 27 8 7 29 29 C 1.37521 * 108.74679 * 359.62875 * 27 8 7 30 30 C 1.38215 * 119.73784 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46510 * 299.99261 * 1 2 3 32 32 H 1.08995 * 109.47260 * 59.99454 * 1 2 3 33 33 H 1.08993 * 109.46707 * 179.97438 * 1 2 3 34 34 H 1.08001 * 119.71900 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.05230 * 180.02562 * 5 4 3 36 36 H 1.07993 * 126.11810 * 359.97330 * 7 6 5 37 37 H 1.09003 * 109.47593 * 297.63780 * 12 11 9 38 38 H 1.09004 * 109.47277 * 57.64186 * 12 11 9 39 39 H 1.09004 * 109.47052 * 177.63260 * 12 11 9 40 40 H 1.09007 * 109.46953 * 330.00577 * 13 11 9 41 41 H 1.08992 * 109.47232 * 210.00241 * 13 11 9 42 42 H 0.96705 * 113.99775 * 299.99781 * 16 14 13 43 43 H 1.09001 * 109.46181 * 65.00364 * 17 14 13 44 44 H 1.08996 * 109.46983 * 305.00449 * 17 14 13 45 45 H 0.96997 * 120.00466 * 0.02562 * 18 17 14 46 46 H 0.96994 * 119.99920 * 179.97438 * 22 21 19 47 47 H 1.08001 * 120.11679 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2808 2.3766 -0.0005 5 6 1.8821 3.5998 0.0000 6 6 3.2811 3.6909 0.0005 7 6 4.1821 4.7823 0.0016 8 6 5.4443 4.2779 0.0022 9 6 6.6795 5.0732 0.0029 10 8 6.6212 6.2875 0.0522 11 7 7.8773 4.4577 -0.0511 12 6 7.9556 2.9979 0.0437 13 6 9.1010 5.2485 -0.2046 14 6 9.6426 5.6231 1.1764 15 1 9.8646 4.7157 1.7381 16 8 8.6641 6.3912 1.8796 17 6 10.9210 6.4485 1.0161 18 7 11.5046 6.7058 2.3350 19 6 12.6644 7.4262 2.4417 20 1 13.1462 7.8083 1.5539 21 6 13.2206 7.6650 3.6909 22 7 12.6330 7.1996 4.7728 23 14 14.8021 8.6483 3.8366 24 1 14.5952 10.0054 3.2704 25 1 15.1842 8.7621 5.2670 26 1 15.8839 7.9594 3.0880 27 7 5.3798 2.8963 -0.0035 28 1 6.1411 2.2951 -0.0074 29 6 4.0584 2.5154 0.0006 30 6 3.4263 1.2764 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 -1.0276 -0.0005 34 1 0.2029 2.3099 -0.0005 35 1 1.2818 4.4976 0.0000 36 1 3.9145 5.8285 0.0018 37 1 7.5736 2.6756 1.0124 38 1 7.3579 2.5496 -0.7501 39 1 8.9937 2.6822 -0.0609 40 1 8.8791 6.1560 -0.7662 41 1 9.8473 4.6626 -0.7409 42 1 8.4179 7.2148 1.4366 43 1 10.6833 7.3961 0.5328 44 1 11.6349 5.8974 0.4041 45 1 11.0720 6.3622 3.1322 46 1 13.0218 7.3662 5.6456 47 1 4.0123 0.3692 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755784257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:58 Heat of formation + Delta-G solvation = -47.751337 kcal Electronic energy + Delta-G solvation = -29618.044269 eV Core-core repulsion = 25381.293741 eV Total energy + Delta-G solvation = -4236.750528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.75511 -40.96510 -40.09381 -38.62154 -36.97224 -36.40104 -35.84549 -33.24453 -33.11557 -31.49217 -30.54151 -29.75851 -28.30541 -27.79238 -27.00143 -25.22858 -23.95005 -22.84166 -22.58594 -21.92072 -20.99304 -19.28929 -19.23431 -18.68567 -17.97289 -17.44380 -16.99008 -16.77841 -16.61746 -16.58903 -16.49267 -16.17503 -16.09232 -15.58964 -15.05756 -14.89840 -14.77462 -14.72669 -14.50549 -14.19781 -14.10938 -14.07045 -13.71719 -13.26971 -13.19062 -12.96886 -12.89690 -12.75512 -12.72932 -12.60740 -12.21625 -12.07031 -11.82582 -11.71826 -11.70959 -11.32002 -11.06524 -10.96506 -10.66199 -9.72471 -9.22177 -9.01994 -8.55932 -7.95148 -5.25257 -0.25049 0.56635 1.04600 1.46051 1.50207 1.56290 1.64956 1.93020 2.26331 2.55139 2.56416 2.83655 3.33927 3.37849 3.53067 3.69239 3.75274 3.96864 4.03327 4.03760 4.07455 4.21534 4.24304 4.29626 4.37303 4.45146 4.47462 4.48620 4.50410 4.53099 4.62562 4.71301 4.77577 4.84640 4.92072 4.92654 5.21622 5.23526 5.27970 5.42076 5.45359 5.47035 5.60931 5.86779 6.18894 6.25270 6.38549 6.47249 6.81544 6.99192 7.31629 8.08169 8.30645 9.28118 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.001735 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.146761 B =16138.416927 C =16248.142227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.153 3.847 4 C -0.223 4.223 5 C -0.023 4.023 6 C -0.172 4.172 7 C -0.106 4.106 8 C -0.002 4.002 9 C 0.582 3.418 10 O -0.550 6.550 11 N -0.605 5.605 12 C 0.052 3.948 13 C 0.097 3.903 14 C 0.094 3.906 15 H 0.089 0.911 16 O -0.567 6.567 17 C 0.124 3.876 18 N -0.741 5.741 19 C -0.250 4.250 20 H 0.079 0.921 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.978 3.022 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.273 1.273 27 N -0.574 5.574 28 H 0.432 0.568 29 C 0.139 3.861 30 C -0.192 4.192 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.125 0.875 42 H 0.377 0.623 43 H 0.022 0.978 44 H 0.044 0.956 45 H 0.373 0.627 46 H 0.251 0.749 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.666 -17.660 -16.137 35.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.106 3.894 4 C -0.242 4.242 5 C -0.041 4.041 6 C -0.177 4.177 7 C -0.133 4.133 8 C -0.110 4.110 9 C 0.372 3.628 10 O -0.428 6.428 11 N -0.336 5.336 12 C -0.090 4.090 13 C -0.026 4.026 14 C 0.033 3.967 15 H 0.107 0.893 16 O -0.373 6.373 17 C -0.004 4.004 18 N -0.384 5.384 19 C -0.382 4.382 20 H 0.097 0.903 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.807 3.193 24 H -0.205 1.205 25 H -0.222 1.222 26 H -0.199 1.199 27 N -0.190 5.190 28 H 0.282 0.718 29 C 0.027 3.973 30 C -0.214 4.214 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.136 0.864 34 H 0.175 0.825 35 H 0.168 0.832 36 H 0.172 0.828 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.135 0.865 40 H 0.102 0.898 41 H 0.142 0.858 42 H 0.225 0.775 43 H 0.040 0.960 44 H 0.062 0.938 45 H 0.205 0.795 46 H 0.059 0.941 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.210 -17.695 -15.784 34.609 hybrid contribution 0.994 0.836 0.452 1.375 sum -24.216 -16.859 -15.333 33.252 Atomic orbital electron populations 1.23387 0.76100 1.05628 1.02574 1.86022 1.23687 1.26526 1.88307 1.18701 0.91346 0.84865 0.94520 1.21076 1.01421 0.91231 1.10459 1.20529 0.91549 0.98626 0.93411 1.18407 0.94560 0.92277 1.12408 1.21029 0.89901 0.99429 1.02927 1.19931 0.94754 0.82803 1.13525 1.17376 0.82586 0.86697 0.76190 1.90782 1.86773 1.14279 1.50984 1.47605 1.05498 1.08225 1.72285 1.22418 1.06570 0.78262 1.01791 1.22219 0.86147 0.97911 0.96344 1.22454 0.86782 0.94052 0.93393 0.89277 1.86526 1.60403 1.38114 1.52260 1.21455 0.93892 0.97106 0.87914 1.42460 1.27351 1.64883 1.03711 1.19657 1.00184 1.25416 0.92896 0.90338 1.25656 1.03012 1.03170 0.95199 1.69849 1.42494 1.52200 0.97576 0.85145 0.79388 0.78634 0.76173 1.20461 1.22236 1.19923 1.43173 1.06778 1.05387 1.63627 0.71788 1.18087 0.84183 0.94489 1.00544 1.19070 0.92210 0.95251 1.14869 0.91507 0.91315 0.86448 0.82481 0.83161 0.82831 0.91442 0.89748 0.86464 0.89796 0.85751 0.77498 0.95976 0.93845 0.79537 0.94052 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.80 113.37 1.11 1.22 16 2 O -0.33 -4.89 10.48 -91.75 -0.96 -5.86 16 3 C 0.15 2.54 6.68 22.56 0.15 2.70 16 4 C -0.22 -3.10 8.95 22.11 0.20 -2.90 16 5 C -0.02 -0.37 10.05 22.29 0.22 -0.14 16 6 C -0.17 -3.69 6.16 -21.34 -0.13 -3.82 16 7 C -0.11 -2.56 10.53 22.54 0.24 -2.32 16 8 C 0.00 -0.04 6.73 39.86 0.27 0.23 16 9 C 0.58 16.22 7.24 86.52 0.63 16.85 16 10 O -0.55 -18.96 14.83 10.21 0.15 -18.81 16 11 N -0.60 -13.48 2.83 -851.24 -2.41 -15.88 16 12 C 0.05 0.69 8.68 127.77 1.11 1.80 16 13 C 0.10 2.28 5.11 86.38 0.44 2.72 16 14 C 0.09 3.07 3.27 30.60 0.10 3.17 16 15 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 16 O -0.57 -22.20 11.95 -134.53 -1.61 -23.81 16 17 C 0.12 4.85 5.90 86.38 0.51 5.36 16 18 N -0.74 -39.06 5.55 -343.45 -1.91 -40.96 16 19 C -0.25 -14.31 9.99 84.03 0.84 -13.47 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 22 N -0.97 -61.67 13.06 21.65 0.28 -61.39 16 23 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 27 N -0.57 -10.85 5.35 -177.18 -0.95 -11.80 16 28 H 0.43 5.72 4.36 -92.70 -0.40 5.32 16 29 C 0.14 2.82 7.25 39.11 0.28 3.10 16 30 C -0.19 -3.46 10.00 22.47 0.22 -3.23 16 31 H 0.07 0.30 7.64 -2.39 -0.02 0.28 16 32 H 0.07 0.27 7.64 -2.39 -0.02 0.25 16 33 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.16 1.22 6.25 -2.91 -0.02 1.20 16 35 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.07 0.93 7.42 -2.39 -0.02 0.91 16 38 H 0.08 0.78 6.00 -2.39 -0.01 0.77 16 39 H 0.12 1.06 7.78 -2.38 -0.02 1.04 16 40 H 0.08 2.12 7.53 -2.38 -0.02 2.10 16 41 H 0.12 2.06 7.90 -2.39 -0.02 2.04 16 42 H 0.38 14.13 8.26 -74.05 -0.61 13.51 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.37 21.61 7.67 -92.71 -0.71 20.89 16 46 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 47 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -80.39 388.10 0.60 -79.79 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -0.69 Total: 42.59 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 6.66 Total: 7.11 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -4.98 Total: -130.04 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -2.42 Total: -48.48 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -80.39 0.60 -79.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755784257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.035 kcal (2) G-P(sol) polarization free energy of solvation -80.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds