Wall clock time and date at job start Wed Apr 1 2020 05:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47312 * 2 1 4 4 C 1.50704 * 109.47282 * 120.00191 * 2 1 3 5 5 O 1.21290 * 119.99455 * 254.67812 * 4 2 1 6 6 N 1.34769 * 120.00217 * 74.67172 * 4 2 1 7 7 C 1.48207 * 119.97409 * 3.56226 * 6 4 2 8 8 C 1.47197 * 110.36281 * 102.52026 * 7 6 4 9 9 C 1.53801 * 111.83546 * 58.26544 * 8 7 6 10 10 N 1.43463 * 107.96096 * 281.70836 * 9 8 7 11 11 S 1.65602 * 118.93900 * 273.62874 * 10 9 8 12 12 O 1.42099 * 106.40234 * 17.57588 * 11 10 9 13 13 O 1.42101 * 106.40687 * 150.49880 * 11 10 9 14 14 N 1.65598 * 107.21735 * 264.03963 * 11 10 9 15 15 C 1.46505 * 120.00255 * 275.25862 * 14 11 10 16 16 C 1.46504 * 120.00174 * 95.25865 * 14 11 10 17 17 C 1.50708 * 109.46893 * 95.00306 * 16 14 11 18 18 H 1.07996 * 120.00116 * 359.97438 * 17 16 14 19 19 C 1.37876 * 119.99698 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00131 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99552 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46779 * 90.00008 * 21 19 17 23 23 H 1.48502 * 109.46692 * 209.99945 * 21 19 17 24 24 H 1.48497 * 109.47315 * 330.00068 * 21 19 17 25 25 C 1.48853 * 122.12361 * 93.64738 * 10 9 8 26 26 C 1.43621 * 119.97245 * 183.57915 * 6 4 2 27 27 H 1.09003 * 109.46774 * 55.49459 * 1 2 3 28 28 H 1.08996 * 109.47643 * 175.49834 * 1 2 3 29 29 H 1.09006 * 109.46986 * 295.50003 * 1 2 3 30 30 H 1.08996 * 109.47272 * 239.99812 * 2 1 3 31 31 H 1.09006 * 109.46944 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.46731 * 299.99718 * 3 2 1 33 33 H 1.08995 * 109.46743 * 60.00110 * 3 2 1 34 34 H 1.08997 * 109.32723 * 222.76671 * 7 6 4 35 35 H 1.09000 * 109.32728 * 342.41107 * 7 6 4 36 36 H 1.09001 * 108.98498 * 297.67294 * 8 7 6 37 37 H 1.09005 * 109.03447 * 178.88726 * 8 7 6 38 38 H 1.09003 * 109.76384 * 162.09413 * 9 8 7 39 39 H 1.08999 * 109.76467 * 41.31956 * 9 8 7 40 40 H 1.09007 * 109.46603 * 94.72185 * 15 14 11 41 41 H 1.08994 * 109.47376 * 214.72977 * 15 14 11 42 42 H 1.09003 * 109.46864 * 334.73352 * 15 14 11 43 43 H 1.08997 * 109.46979 * 214.99760 * 16 14 11 44 44 H 1.08994 * 109.47139 * 335.00255 * 16 14 11 45 45 H 0.96996 * 119.99685 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.47971 * 80.57909 * 25 10 9 47 47 H 1.09004 * 109.48535 * 200.61033 * 25 10 9 48 48 H 1.09005 * 108.87437 * 149.87268 * 26 6 4 49 49 H 1.08999 * 108.87631 * 31.42857 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.4962 -0.0727 2.1520 6 7 1.9661 -2.0543 1.3069 7 6 1.4726 -2.8384 0.1501 8 6 2.5997 -3.4515 -0.5714 9 6 3.4326 -4.3675 0.3411 10 7 4.2798 -3.5368 1.1475 11 16 5.7497 -3.0680 0.5458 12 8 5.6930 -3.2753 -0.8588 13 8 6.0409 -1.8078 1.1343 14 7 6.8793 -4.1289 1.1298 15 6 7.4713 -3.9140 2.4525 16 6 7.2866 -5.2824 0.3236 17 6 8.5339 -4.9395 -0.4496 18 1 8.9784 -3.9603 -0.3508 19 6 9.1069 -5.8758 -1.2840 20 7 8.5652 -7.0681 -1.4047 21 14 10.6525 -5.4505 -2.2430 22 1 11.8483 -5.8024 -1.4358 23 1 10.6716 -6.2155 -3.5156 24 1 10.6664 -3.9955 -2.5398 25 6 3.8804 -3.0829 2.5077 26 6 2.3734 -2.7255 2.5095 27 1 -0.3633 0.5822 -0.8469 28 1 -0.3634 -1.0244 -0.0807 29 1 -0.3633 0.4424 0.9276 30 1 1.8933 -0.5138 -0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.8030 -3.6219 0.5046 35 1 0.9298 -2.1792 -0.5273 36 1 3.2414 -2.6622 -0.9631 37 1 2.2118 -4.0379 -1.4044 38 1 4.0424 -5.0366 -0.2660 39 1 2.7706 -4.9504 0.9815 40 1 6.9197 -4.4903 3.1954 41 1 8.5122 -4.2370 2.4415 42 1 7.4222 -2.8547 2.7048 43 1 7.4866 -6.1306 0.9782 44 1 6.4876 -5.5403 -0.3714 45 1 8.9686 -7.7268 -1.9914 46 1 4.0655 -3.8814 3.2263 47 1 4.4628 -2.2036 2.7832 48 1 1.7937 -3.6426 2.6152 49 1 2.1654 -2.0789 3.3620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066578089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:26 Heat of formation + Delta-G solvation = -101.859509 kcal Electronic energy + Delta-G solvation = -31510.630526 eV Core-core repulsion = 27406.977643 eV Total energy + Delta-G solvation = -4103.652883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.59774 -37.84970 -36.66765 -35.47296 -35.12008 -35.02222 -34.35538 -32.79597 -32.43735 -28.38574 -27.78571 -27.38121 -26.22017 -25.06778 -24.22702 -22.26811 -21.85530 -21.42459 -18.91336 -18.34285 -17.59404 -17.19236 -16.86114 -16.56791 -16.34471 -15.73145 -15.37694 -14.90593 -14.59078 -14.47500 -14.29049 -13.98461 -13.59127 -13.56012 -13.29526 -13.14046 -12.99010 -12.61163 -12.49645 -12.36949 -12.16282 -12.14463 -11.92414 -11.73558 -11.60094 -11.50420 -11.39671 -11.16980 -11.16367 -11.12881 -11.09849 -11.05465 -10.76270 -10.64551 -10.48423 -10.03110 -9.76497 -9.71339 -8.97353 -8.70788 -8.44968 -8.04154 -6.07840 -4.11878 1.20704 2.56841 2.89368 3.30752 3.36847 3.43005 3.49010 4.07164 4.24409 4.43691 4.58038 4.64678 4.74731 4.78283 4.87347 4.89406 4.98694 5.15774 5.20175 5.26938 5.35416 5.38097 5.40781 5.44291 5.54855 5.59921 5.61714 5.64318 5.67887 5.69893 5.74578 5.84462 5.95096 6.00129 6.11668 6.14396 6.22562 6.33671 6.51634 6.55040 6.85418 7.22091 7.26026 7.40521 7.61238 7.89924 8.14430 8.19595 8.90662 9.53505 11.00702 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.003393 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.493778 B = 8250.179876 C = 8356.875166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.135 4.135 4 C 0.517 3.483 5 O -0.532 6.532 6 N -0.602 5.602 7 C 0.110 3.890 8 C -0.170 4.170 9 C 0.132 3.868 10 N -1.005 6.005 11 S 2.774 3.226 12 O -0.962 6.962 13 O -0.993 6.993 14 N -0.998 5.998 15 C 0.095 3.905 16 C 0.258 3.742 17 C -0.531 4.531 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.098 3.902 26 C 0.111 3.889 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.038 0.962 45 H 0.264 0.736 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.154 6.598 5.739 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.192 4.192 4 C 0.305 3.695 5 O -0.408 6.408 6 N -0.335 5.335 7 C -0.012 4.012 8 C -0.210 4.210 9 C 0.005 3.995 10 N -0.843 5.843 11 S 2.783 3.217 12 O -0.946 6.946 13 O -0.976 6.976 14 N -0.840 5.840 15 C -0.052 4.052 16 C 0.136 3.864 17 C -0.570 4.570 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.535 5.535 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.028 4.028 26 C -0.015 4.015 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.112 0.888 48 H 0.095 0.905 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.746 7.480 5.588 20.942 hybrid contribution 0.949 -0.480 -0.406 1.138 sum -17.797 7.000 5.182 19.814 Atomic orbital electron populations 1.21825 0.92740 1.02489 1.02943 1.21339 0.97611 0.98222 0.96869 1.21640 1.02010 0.93474 1.02124 1.20732 0.77895 0.81833 0.89050 1.90696 1.44620 1.65625 1.39881 1.47544 1.64676 1.05857 1.15403 1.21031 0.96385 0.95899 0.87911 1.21724 0.98556 1.01161 0.99543 1.20751 0.93989 0.92190 0.92591 1.57931 1.35568 1.65206 1.25598 1.02278 0.72444 0.73453 0.73571 1.93608 1.86195 1.85946 1.28843 1.93533 1.84119 1.40493 1.79492 1.57687 1.54773 1.44421 1.27148 1.21344 1.00145 1.00493 0.83226 1.19039 0.95910 0.82197 0.89292 1.21505 1.10335 0.99650 1.25510 0.92269 1.24923 0.97699 0.94854 0.96453 1.69914 1.40275 1.04744 1.38522 0.86522 0.82927 0.78765 0.79430 1.20554 1.20983 1.19689 1.22606 0.96960 1.00189 0.83034 1.21352 0.94381 0.97629 0.88104 0.91314 0.91893 0.92044 0.88793 0.91934 0.92016 0.91663 0.90442 0.89311 0.90988 0.89335 0.89402 0.90480 0.94234 0.90562 0.91662 0.94844 0.94367 0.92685 0.90766 0.88763 0.90535 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.88 37.15 0.33 -0.71 16 2 C -0.12 -1.24 2.39 -91.77 -0.22 -1.46 16 3 C -0.13 -1.47 8.60 37.16 0.32 -1.15 16 4 C 0.52 6.96 6.87 -10.99 -0.08 6.88 16 5 O -0.53 -9.11 15.57 5.55 0.09 -9.02 16 6 N -0.60 -6.82 2.46 -176.63 -0.43 -7.25 16 7 C 0.11 0.94 5.11 -5.89 -0.03 0.91 16 8 C -0.17 -1.90 5.52 -29.10 -0.16 -2.06 16 9 C 0.13 1.69 5.24 -5.23 -0.03 1.66 16 10 N -1.00 -15.30 2.83 -113.21 -0.32 -15.63 16 11 S 2.77 57.30 5.84 -107.50 -0.63 56.67 16 12 O -0.96 -22.87 14.95 -57.17 -0.86 -23.73 16 13 O -0.99 -22.35 15.41 -57.17 -0.88 -23.24 16 14 N -1.00 -21.34 3.23 -123.04 -0.40 -21.74 16 15 C 0.09 1.69 10.72 59.85 0.64 2.33 16 16 C 0.26 6.51 5.12 -5.19 -0.03 6.48 16 17 C -0.53 -15.10 9.38 -34.44 -0.32 -15.42 16 18 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 21 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.10 1.26 6.84 -1.75 -0.01 1.25 16 26 C 0.11 1.18 5.23 -4.58 -0.02 1.16 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.38 6.28 -51.93 -0.33 0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.92 7.14 -51.93 -0.37 0.55 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.73 7.94 -51.93 -0.41 0.32 16 34 H 0.08 0.48 8.05 -51.93 -0.42 0.06 16 35 H 0.09 0.61 4.39 -51.93 -0.23 0.39 16 36 H 0.07 1.02 7.28 -51.93 -0.38 0.64 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.30 7.63 -51.93 -0.40 0.90 16 39 H 0.08 0.74 7.59 -51.93 -0.39 0.35 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 42 H 0.06 1.11 6.99 -51.93 -0.36 0.75 16 43 H 0.03 0.86 8.11 -51.93 -0.42 0.43 16 44 H 0.04 1.01 7.46 -51.93 -0.39 0.63 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.09 1.44 6.91 -51.93 -0.36 1.08 16 48 H 0.08 0.60 7.73 -51.93 -0.40 0.19 16 49 H 0.09 0.96 7.42 -51.93 -0.39 0.57 16 LS Contribution 391.94 15.07 5.91 5.91 Total: -1.00 -36.64 391.94 -9.68 -46.32 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -8.17 Total: -1.49 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 0.29 Total: 1.57 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -0.42 Total: -69.91 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -1.65 Total: -55.98 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 57.30 SS G_CDS: -0.63 Total: 56.67 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.64 -9.68 -46.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066578089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.544 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds