Wall clock time and date at job start Wed Apr 1 2020 05:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47312 * 2 1 4 4 C 1.50704 * 109.47282 * 120.00191 * 2 1 3 5 5 O 1.21290 * 119.99455 * 254.67812 * 4 2 1 6 6 N 1.34769 * 120.00217 * 74.67172 * 4 2 1 7 7 C 1.48207 * 119.97409 * 3.56226 * 6 4 2 8 8 C 1.47197 * 110.36281 * 102.52026 * 7 6 4 9 9 C 1.53801 * 111.83546 * 58.26544 * 8 7 6 10 10 N 1.43463 * 107.96096 * 281.70836 * 9 8 7 11 11 S 1.65602 * 118.93900 * 273.62874 * 10 9 8 12 12 O 1.42099 * 106.40234 * 17.57588 * 11 10 9 13 13 O 1.42101 * 106.40687 * 150.49880 * 11 10 9 14 14 N 1.65598 * 107.21735 * 264.03963 * 11 10 9 15 15 C 1.46505 * 120.00255 * 275.25862 * 14 11 10 16 16 C 1.46504 * 120.00174 * 95.25865 * 14 11 10 17 17 C 1.50708 * 109.46893 * 95.00306 * 16 14 11 18 18 H 1.07996 * 120.00116 * 359.97438 * 17 16 14 19 19 C 1.37876 * 119.99698 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00131 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99552 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46779 * 90.00008 * 21 19 17 23 23 H 1.48502 * 109.46692 * 209.99945 * 21 19 17 24 24 H 1.48497 * 109.47315 * 330.00068 * 21 19 17 25 25 C 1.48853 * 122.12361 * 93.64738 * 10 9 8 26 26 C 1.43621 * 119.97245 * 183.57915 * 6 4 2 27 27 H 1.09003 * 109.46774 * 55.49459 * 1 2 3 28 28 H 1.08996 * 109.47643 * 175.49834 * 1 2 3 29 29 H 1.09006 * 109.46986 * 295.50003 * 1 2 3 30 30 H 1.08996 * 109.47272 * 239.99812 * 2 1 3 31 31 H 1.09006 * 109.46944 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.46731 * 299.99718 * 3 2 1 33 33 H 1.08995 * 109.46743 * 60.00110 * 3 2 1 34 34 H 1.08997 * 109.32723 * 222.76671 * 7 6 4 35 35 H 1.09000 * 109.32728 * 342.41107 * 7 6 4 36 36 H 1.09001 * 108.98498 * 297.67294 * 8 7 6 37 37 H 1.09005 * 109.03447 * 178.88726 * 8 7 6 38 38 H 1.09003 * 109.76384 * 162.09413 * 9 8 7 39 39 H 1.08999 * 109.76467 * 41.31956 * 9 8 7 40 40 H 1.09007 * 109.46603 * 94.72185 * 15 14 11 41 41 H 1.08994 * 109.47376 * 214.72977 * 15 14 11 42 42 H 1.09003 * 109.46864 * 334.73352 * 15 14 11 43 43 H 1.08997 * 109.46979 * 214.99760 * 16 14 11 44 44 H 1.08994 * 109.47139 * 335.00255 * 16 14 11 45 45 H 0.96996 * 119.99685 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.47971 * 80.57909 * 25 10 9 47 47 H 1.09004 * 109.48535 * 200.61033 * 25 10 9 48 48 H 1.09005 * 108.87437 * 149.87268 * 26 6 4 49 49 H 1.08999 * 108.87631 * 31.42857 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.4962 -0.0727 2.1520 6 7 1.9661 -2.0543 1.3069 7 6 1.4726 -2.8384 0.1501 8 6 2.5997 -3.4515 -0.5714 9 6 3.4326 -4.3675 0.3411 10 7 4.2798 -3.5368 1.1475 11 16 5.7497 -3.0680 0.5458 12 8 5.6930 -3.2753 -0.8588 13 8 6.0409 -1.8078 1.1343 14 7 6.8793 -4.1289 1.1298 15 6 7.4713 -3.9140 2.4525 16 6 7.2866 -5.2824 0.3236 17 6 8.5339 -4.9395 -0.4496 18 1 8.9784 -3.9603 -0.3508 19 6 9.1069 -5.8758 -1.2840 20 7 8.5652 -7.0681 -1.4047 21 14 10.6525 -5.4505 -2.2430 22 1 11.8483 -5.8024 -1.4358 23 1 10.6716 -6.2155 -3.5156 24 1 10.6664 -3.9955 -2.5398 25 6 3.8804 -3.0829 2.5077 26 6 2.3734 -2.7255 2.5095 27 1 -0.3633 0.5822 -0.8469 28 1 -0.3634 -1.0244 -0.0807 29 1 -0.3633 0.4424 0.9276 30 1 1.8933 -0.5138 -0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.8030 -3.6219 0.5046 35 1 0.9298 -2.1792 -0.5273 36 1 3.2414 -2.6622 -0.9631 37 1 2.2118 -4.0379 -1.4044 38 1 4.0424 -5.0366 -0.2660 39 1 2.7706 -4.9504 0.9815 40 1 6.9197 -4.4903 3.1954 41 1 8.5122 -4.2370 2.4415 42 1 7.4222 -2.8547 2.7048 43 1 7.4866 -6.1306 0.9782 44 1 6.4876 -5.5403 -0.3714 45 1 8.9686 -7.7268 -1.9914 46 1 4.0655 -3.8814 3.2263 47 1 4.4628 -2.2036 2.7832 48 1 1.7937 -3.6426 2.6152 49 1 2.1654 -2.0789 3.3620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066578089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:25 Heat of formation + Delta-G solvation = -128.653333 kcal Electronic energy + Delta-G solvation = -31511.792393 eV Core-core repulsion = 27406.977643 eV Total energy + Delta-G solvation = -4104.814750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.52825 -38.90763 -38.38782 -37.25863 -36.87570 -35.98530 -35.28350 -34.54646 -33.71450 -29.71806 -29.37175 -28.11627 -27.14078 -26.84039 -25.16919 -24.21329 -22.77245 -22.41063 -19.95704 -19.65371 -19.04972 -18.46046 -18.40690 -18.20828 -17.66850 -17.04410 -16.71349 -16.35534 -15.81493 -15.58196 -15.38549 -15.22159 -14.94763 -14.87973 -14.43638 -14.24876 -14.10150 -13.98097 -13.90967 -13.54786 -13.43395 -13.26707 -13.23660 -13.12428 -13.08012 -12.96818 -12.86767 -12.53321 -12.49318 -12.42625 -12.28532 -12.22675 -12.05998 -11.96950 -11.91984 -11.80190 -11.69858 -10.69677 -10.62905 -10.09209 -9.84716 -9.63795 -8.24233 -6.36607 -0.39238 1.35943 1.37904 1.48752 1.58909 1.94337 2.14269 2.36683 2.53241 3.06141 3.33719 3.44520 3.67662 3.85891 3.88912 3.97185 4.03732 4.06699 4.11390 4.31718 4.41914 4.46856 4.53503 4.62508 4.66669 4.69799 4.72834 4.73320 4.79219 4.80320 4.84029 4.88577 4.96241 4.98672 5.02845 5.10779 5.14189 5.24608 5.30133 5.33469 5.41309 5.62983 5.68684 5.73215 5.94753 6.07094 6.36603 6.70805 7.18858 7.32382 8.83206 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018484 B = 0.003393 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.493778 B = 8250.179876 C = 8356.875166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.503 3.497 5 O -0.582 6.582 6 N -0.601 5.601 7 C 0.107 3.893 8 C -0.168 4.168 9 C 0.121 3.879 10 N -0.992 5.992 11 S 2.781 3.219 12 O -1.002 7.002 13 O -1.020 7.020 14 N -1.007 6.007 15 C 0.089 3.911 16 C 0.275 3.725 17 C -0.557 4.557 18 H 0.045 0.955 19 C 0.017 3.983 20 N -0.919 5.919 21 Si 0.954 3.046 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.278 1.278 25 C 0.093 3.907 26 C 0.110 3.890 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.033 0.967 37 H 0.114 0.886 38 H 0.062 0.938 39 H 0.123 0.877 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.028 0.972 44 H 0.020 0.980 45 H 0.269 0.731 46 H 0.107 0.893 47 H 0.062 0.938 48 H 0.120 0.880 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.532 5.386 5.802 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.142 4.142 3 C -0.193 4.193 4 C 0.293 3.707 5 O -0.462 6.462 6 N -0.333 5.333 7 C -0.013 4.013 8 C -0.208 4.208 9 C -0.005 4.005 10 N -0.833 5.833 11 S 2.791 3.209 12 O -0.986 6.986 13 O -1.003 7.003 14 N -0.848 5.848 15 C -0.057 4.057 16 C 0.151 3.849 17 C -0.596 4.596 18 H 0.063 0.937 19 C -0.183 4.183 20 N -0.558 5.558 21 Si 0.778 3.222 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.203 1.203 25 C -0.033 4.033 26 C -0.016 4.016 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.049 0.951 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.051 0.949 37 H 0.132 0.868 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.038 0.962 45 H 0.078 0.922 46 H 0.125 0.875 47 H 0.081 0.919 48 H 0.138 0.862 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.121 6.247 5.650 22.739 hybrid contribution 1.648 -0.108 -0.392 1.698 sum -19.473 6.139 5.257 21.084 Atomic orbital electron populations 1.21806 0.89796 1.04127 1.03419 1.21434 0.99976 0.97200 0.95608 1.21650 0.99975 0.94651 1.03022 1.21379 0.77277 0.82743 0.89309 1.90666 1.46903 1.66862 1.41755 1.47742 1.63693 1.05472 1.16346 1.21302 0.95769 0.96973 0.87285 1.21739 0.98626 1.00130 1.00316 1.21079 0.93949 0.92302 0.93176 1.57511 1.33497 1.65441 1.26900 1.01741 0.73466 0.72953 0.72702 1.93541 1.87062 1.86335 1.31635 1.93493 1.85130 1.42041 1.79685 1.57610 1.56041 1.43126 1.28038 1.21547 1.00216 1.01422 0.82497 1.18597 0.94174 0.83144 0.88962 1.21816 1.11821 0.99263 1.26723 0.93692 1.25698 1.00627 0.94789 0.97213 1.69986 1.41471 1.05376 1.39004 0.85625 0.79783 0.78151 0.78598 1.18936 1.19805 1.20291 1.22873 0.98344 1.00112 0.81932 1.21494 0.92928 0.99311 0.87878 0.89430 0.89878 0.92748 0.88150 0.95114 0.89319 0.92506 0.86229 0.87348 0.94853 0.86811 0.91968 0.85890 0.90488 0.91364 0.91319 0.95350 0.96154 0.92175 0.87480 0.91921 0.86159 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.88 71.98 0.64 -0.95 16 2 C -0.12 -2.40 2.39 -11.54 -0.03 -2.43 16 3 C -0.14 -3.00 8.60 71.98 0.62 -2.38 16 4 C 0.50 13.34 6.87 87.66 0.60 13.94 16 5 O -0.58 -20.59 15.57 -3.06 -0.05 -20.64 16 6 N -0.60 -12.26 2.46 -831.12 -2.04 -14.30 16 7 C 0.11 1.42 5.11 84.24 0.43 1.85 16 8 C -0.17 -3.39 5.52 29.06 0.16 -3.23 16 9 C 0.12 2.85 5.24 87.21 0.46 3.31 16 10 N -0.99 -29.47 2.83 -512.10 -1.45 -30.92 16 11 S 2.78 118.62 5.84 -56.49 -0.33 118.29 16 12 O -1.00 -49.84 14.95 -128.00 -1.91 -51.75 16 13 O -1.02 -48.01 15.41 -128.00 -1.97 -49.98 16 14 N -1.01 -43.99 3.23 -543.20 -1.75 -45.75 16 15 C 0.09 3.17 10.72 127.77 1.37 4.54 16 16 C 0.27 14.25 5.12 85.63 0.44 14.69 16 17 C -0.56 -32.50 9.38 25.60 0.24 -32.26 16 18 H 0.04 2.68 7.81 -2.91 -0.02 2.65 16 19 C 0.02 0.97 5.46 84.65 0.46 1.43 16 20 N -0.92 -53.72 13.29 21.45 0.28 -53.44 16 21 Si 0.95 45.15 29.54 68.60 2.03 47.18 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 25 C 0.09 2.24 6.84 86.56 0.59 2.83 16 26 C 0.11 2.02 5.23 87.55 0.46 2.48 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.65 6.28 -2.39 -0.01 0.63 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.10 1.85 7.14 -2.39 -0.02 1.83 16 31 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.33 7.94 -2.39 -0.02 1.31 16 34 H 0.12 0.71 8.05 -2.39 -0.02 0.69 16 35 H 0.11 1.05 4.39 -2.39 -0.01 1.04 16 36 H 0.03 0.94 7.28 -2.39 -0.02 0.92 16 37 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.06 1.82 7.63 -2.39 -0.02 1.80 16 39 H 0.12 1.79 7.59 -2.39 -0.02 1.78 16 40 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 42 H 0.07 2.39 6.99 -2.39 -0.02 2.37 16 43 H 0.03 1.48 8.11 -2.39 -0.02 1.46 16 44 H 0.02 1.12 7.46 -2.39 -0.02 1.11 16 45 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 46 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.06 1.94 6.91 -2.38 -0.02 1.92 16 48 H 0.12 1.20 7.73 -2.38 -0.02 1.18 16 49 H 0.08 1.68 7.42 -2.39 -0.02 1.66 16 Total: -1.00 -84.87 391.94 0.17 -84.70 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.93 Total: 12.78 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 6.44 Total: 3.82 kcal Atomic # 7 Polarization: -139.44 SS G_CDS: -4.96 Total: -144.40 kcal Atomic # 8 Polarization: -118.44 SS G_CDS: -3.93 Total: -122.37 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 118.62 SS G_CDS: -0.33 Total: 118.29 kcal Total: -84.87 0.17 -84.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066578089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.953 kcal (2) G-P(sol) polarization free energy of solvation -84.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds