Wall clock time and date at job start Wed Apr 1 2020 04:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99622 * 2 1 4 4 C 1.52998 * 109.46816 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47503 * 64.99898 * 4 3 2 6 6 C 1.46499 * 119.99684 * 270.00080 * 5 4 3 7 7 C 1.50691 * 109.47287 * 269.99470 * 6 5 4 8 8 H 1.08007 * 119.99955 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00321 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00452 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99829 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.46898 * 89.99837 * 11 9 7 13 13 H 1.48496 * 109.47414 * 209.99854 * 11 9 7 14 14 H 1.48501 * 109.46977 * 330.00150 * 11 9 7 15 15 C 1.34772 * 120.00050 * 89.99895 * 5 4 3 16 16 O 1.21584 * 120.00225 * 180.02562 * 15 5 4 17 17 N 1.34786 * 119.99739 * 0.02562 * 15 5 4 18 18 C 1.40111 * 119.99619 * 184.59053 * 17 15 5 19 19 C 1.38885 * 120.00057 * 324.92184 * 18 17 15 20 20 C 1.38030 * 120.01356 * 179.97438 * 19 18 17 21 21 C 1.39035 * 119.95482 * 359.69145 * 20 19 18 22 22 C 1.38702 * 119.97660 * 0.57720 * 21 20 19 23 23 C 1.38037 * 120.07764 * 359.44452 * 22 21 20 24 24 C 1.50677 * 119.79824 * 179.73290 * 22 21 20 25 25 C 1.52899 * 109.53599 * 325.77548 * 24 22 21 26 26 C 1.50495 * 109.90945 * 48.64870 * 25 24 22 27 27 O 1.21291 * 119.61898 * 144.78476 * 26 25 24 28 28 N 1.34559 * 120.76102 * 324.75647 * 26 25 24 29 29 H 1.08997 * 109.46707 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46713 * 299.99975 * 1 2 3 31 31 H 1.09002 * 109.47164 * 60.00048 * 1 2 3 32 32 H 1.09003 * 109.47189 * 60.00309 * 3 2 1 33 33 H 1.08996 * 109.47268 * 299.99855 * 3 2 1 34 34 H 1.09010 * 109.47077 * 304.99910 * 4 3 2 35 35 H 1.09002 * 109.47152 * 185.00151 * 4 3 2 36 36 H 1.08996 * 109.47330 * 30.00071 * 6 5 4 37 37 H 1.09007 * 109.46633 * 149.99582 * 6 5 4 38 38 H 0.97004 * 120.00473 * 180.02562 * 10 9 7 39 39 H 0.96999 * 119.99789 * 4.58472 * 17 15 5 40 40 H 1.07997 * 119.98769 * 359.97438 * 19 18 17 41 41 H 1.08005 * 120.00532 * 179.97438 * 20 19 18 42 42 H 1.08005 * 120.01465 * 180.28707 * 23 22 21 43 43 H 1.09001 * 109.45802 * 205.76161 * 24 22 21 44 44 H 1.09000 * 109.44875 * 85.79219 * 24 22 21 45 45 H 1.08991 * 109.39989 * 288.50820 * 25 24 22 46 46 H 1.09003 * 109.39603 * 168.77668 * 25 24 22 47 47 H 0.96994 * 119.77813 * 180.82284 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1053 -0.8920 -1.3426 7 6 5.5010 -1.2977 -0.9449 8 1 6.2196 -0.5458 -0.6537 9 6 5.8607 -2.6287 -0.9525 10 7 7.0786 -2.9828 -0.6049 11 14 4.6180 -3.9291 -1.4568 12 1 4.7037 -4.1538 -2.9223 13 1 4.9121 -5.1979 -0.7435 14 1 3.2503 -3.4693 -1.1057 15 6 4.2616 1.3338 -2.3218 16 8 4.6265 0.8190 -3.3610 17 7 4.1428 2.6738 -2.2388 18 6 4.3464 3.4668 -3.3758 19 6 5.3018 3.1015 -4.3153 20 6 5.5023 3.8822 -5.4357 21 6 4.7427 5.0311 -5.6263 22 6 3.7928 5.3979 -4.6846 23 6 3.5924 4.6175 -3.5637 24 6 2.9760 6.6470 -4.8922 25 6 3.8291 7.7052 -5.5925 26 6 4.5173 7.1006 -6.7865 27 8 4.6858 7.7701 -7.7838 28 7 4.9483 5.8262 -6.7603 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1766 0.0889 36 1 3.3853 -1.3628 -0.6733 37 1 3.9121 -1.2113 -2.3668 38 1 7.3318 -3.9192 -0.6107 39 1 3.9163 3.0891 -1.3920 40 1 5.8879 2.2063 -4.1690 41 1 6.2456 3.5982 -6.1661 42 1 2.8492 4.9017 -2.8334 43 1 2.6445 7.0287 -3.9265 44 1 2.1075 6.4145 -5.5084 45 1 4.5775 8.0851 -4.8972 46 1 3.1910 8.5261 -5.9197 47 1 5.4007 5.4547 -7.5337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078475941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:15 Heat of formation + Delta-G solvation = -69.850392 kcal Electronic energy + Delta-G solvation = -30515.394875 eV Core-core repulsion = 26277.686060 eV Total energy + Delta-G solvation = -4237.708815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.17211 -40.15622 -38.65109 -37.73886 -35.98609 -34.97510 -34.16515 -33.65157 -32.45750 -30.22111 -29.92641 -28.83145 -27.24579 -26.12938 -24.87940 -23.40611 -22.94116 -22.79881 -21.92902 -19.99927 -18.91959 -18.06724 -17.98653 -17.16373 -16.99172 -16.83099 -16.29533 -16.01072 -15.72831 -15.14484 -15.04172 -14.82279 -14.69981 -14.22078 -14.13859 -13.92467 -13.80507 -13.61276 -13.28591 -13.11832 -12.72090 -12.57011 -12.31928 -12.22791 -12.03633 -11.84621 -11.69956 -11.57665 -11.46449 -11.05066 -10.93050 -10.85004 -10.42553 -10.25694 -10.11591 -9.68407 -9.57092 -9.53575 -9.33787 -8.87478 -8.54135 -7.89197 -7.51449 -6.05045 -4.03050 1.09180 1.25549 2.33441 2.85363 3.01146 3.34363 3.40564 3.43722 3.51456 3.79741 3.92839 4.12118 4.21191 4.38521 4.44649 4.49506 4.71375 4.86929 5.08061 5.09940 5.20227 5.24579 5.27629 5.29246 5.31196 5.36645 5.38476 5.39744 5.42094 5.50830 5.59106 5.68408 5.83223 5.93291 6.04993 6.15462 6.31756 6.48576 6.57970 6.66503 6.94520 7.01366 7.12720 7.22208 7.26190 7.45628 7.67300 7.77565 8.39927 8.50448 8.96724 9.07862 9.55959 11.08321 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013593 B = 0.002713 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.411845 B =10317.809434 C =11753.214062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.373 6.373 3 C 0.042 3.958 4 C 0.111 3.889 5 N -0.593 5.593 6 C 0.234 3.766 7 C -0.528 4.528 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.900 5.900 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.700 3.300 16 O -0.566 6.566 17 N -0.696 5.696 18 C 0.165 3.835 19 C -0.089 4.089 20 C -0.126 4.126 21 C 0.126 3.874 22 C -0.106 4.106 23 C -0.121 4.121 24 C -0.074 4.074 25 C -0.137 4.137 26 C 0.520 3.480 27 O -0.539 6.539 28 N -0.659 5.659 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.034 0.966 38 H 0.264 0.736 39 H 0.401 0.599 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 19.105 -1.424 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C -0.036 4.036 4 C -0.014 4.014 5 N -0.326 5.326 6 C 0.114 3.886 7 C -0.567 4.567 8 H 0.091 0.909 9 C -0.129 4.129 10 N -0.539 5.539 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.402 3.598 16 O -0.442 6.442 17 N -0.346 5.346 18 C 0.068 3.932 19 C -0.110 4.110 20 C -0.147 4.147 21 C 0.031 3.969 22 C -0.109 4.109 23 C -0.143 4.143 24 C -0.111 4.111 25 C -0.177 4.177 26 C 0.309 3.691 27 O -0.416 6.416 28 N -0.304 5.304 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.237 0.763 40 H 0.171 0.829 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -11.637 18.765 -2.510 22.223 hybrid contribution -0.605 -0.632 0.004 0.875 sum -12.241 18.133 -2.506 22.021 Atomic orbital electron populations 1.22715 0.81815 1.02646 0.99328 1.88064 1.18924 1.26995 1.95192 1.23147 0.95169 0.85546 0.99764 1.21503 0.91187 0.98855 0.89812 1.47166 1.67804 1.08647 1.09027 1.19648 0.97679 0.73254 0.98053 1.21372 0.96191 0.93523 1.45601 0.90892 1.24813 0.95141 0.98331 0.94630 1.69896 1.18190 1.17255 1.48515 0.86885 0.82483 0.81378 0.79247 1.20043 1.21229 1.18621 1.15905 0.78999 0.80127 0.84774 1.90887 1.52292 1.72055 1.28978 1.42941 1.75050 1.05655 1.10944 1.17492 0.95100 0.91594 0.89034 1.21371 0.96411 1.00074 0.93113 1.20760 1.00198 0.94517 0.99246 1.17568 0.97608 0.93286 0.88457 1.19076 0.98125 0.98374 0.95336 1.20469 0.99817 0.95908 0.98076 1.20385 0.97290 0.91467 1.01942 1.21673 1.00771 0.99485 0.95775 1.20734 0.77779 0.81006 0.89588 1.90771 1.56503 1.60043 1.34234 1.43584 1.58077 1.11925 1.16812 0.89787 0.94451 0.94490 0.92725 0.93602 0.88205 0.90410 0.93723 0.94801 0.92651 0.76281 0.82917 0.85197 0.85311 0.89145 0.90031 0.87868 0.87526 0.75243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.37 -5.63 9.53 -35.23 -0.34 -5.96 16 3 C 0.04 0.51 6.28 37.16 0.23 0.74 16 4 C 0.11 1.58 5.62 -4.04 -0.02 1.56 16 5 N -0.59 -11.57 2.42 -180.80 -0.44 -12.01 16 6 C 0.23 5.65 4.05 -5.20 -0.02 5.63 16 7 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 8 H 0.07 2.25 8.06 -52.48 -0.42 1.82 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 10 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 11 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 12 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 15 C 0.70 13.55 8.12 -86.91 -0.71 12.84 16 16 O -0.57 -13.29 13.35 5.29 0.07 -13.22 16 17 N -0.70 -9.77 5.22 -14.18 -0.07 -9.84 16 18 C 0.16 2.20 6.30 -83.61 -0.53 1.67 16 19 C -0.09 -1.30 8.69 -39.42 -0.34 -1.65 16 20 C -0.13 -1.51 9.92 -39.36 -0.39 -1.90 16 21 C 0.13 1.37 6.51 -83.65 -0.54 0.82 16 22 C -0.11 -1.03 5.65 -104.54 -0.59 -1.62 16 23 C -0.12 -1.22 9.60 -39.43 -0.38 -1.60 16 24 C -0.07 -0.50 5.99 -27.95 -0.17 -0.67 16 25 C -0.14 -0.99 6.08 -28.03 -0.17 -1.16 16 26 C 0.52 5.59 7.72 -11.18 -0.09 5.51 16 27 O -0.54 -7.66 17.91 5.55 0.10 -7.56 16 28 N -0.66 -6.64 5.37 -9.95 -0.05 -6.70 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 1.55 8.07 -51.92 -0.42 1.13 16 35 H 0.08 0.82 6.30 -51.93 -0.33 0.49 16 36 H 0.04 1.07 6.17 -51.93 -0.32 0.75 16 37 H 0.03 0.89 6.85 -51.92 -0.36 0.53 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.40 4.21 6.52 -40.82 -0.27 3.95 16 40 H 0.15 2.72 6.22 -52.49 -0.33 2.39 16 41 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 42 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 43 H 0.09 0.42 8.06 -51.93 -0.42 0.00 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.41 3.66 8.83 -40.82 -0.36 3.30 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -37.27 387.58 -8.44 -45.70 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.61 Total: 5.22 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -3.04 Total: 8.39 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.21 Total: -55.39 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.17 Total: -26.74 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.27 -8.44 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078475941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.145 kcal (2) G-P(sol) polarization free energy of solvation -37.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds