Wall clock time and date at job start Wed Apr 1 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99622 * 2 1 4 4 C 1.52998 * 109.46816 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47503 * 64.99898 * 4 3 2 6 6 C 1.46499 * 119.99684 * 270.00080 * 5 4 3 7 7 C 1.50691 * 109.47287 * 269.99470 * 6 5 4 8 8 H 1.08007 * 119.99955 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00321 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00452 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99829 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.46898 * 89.99837 * 11 9 7 13 13 H 1.48496 * 109.47414 * 209.99854 * 11 9 7 14 14 H 1.48501 * 109.46977 * 330.00150 * 11 9 7 15 15 C 1.34772 * 120.00050 * 89.99895 * 5 4 3 16 16 O 1.21584 * 120.00225 * 180.02562 * 15 5 4 17 17 N 1.34786 * 119.99739 * 0.02562 * 15 5 4 18 18 C 1.40111 * 119.99619 * 184.59053 * 17 15 5 19 19 C 1.38885 * 120.00057 * 324.92184 * 18 17 15 20 20 C 1.38030 * 120.01356 * 179.97438 * 19 18 17 21 21 C 1.39035 * 119.95482 * 359.69145 * 20 19 18 22 22 C 1.38702 * 119.97660 * 0.57720 * 21 20 19 23 23 C 1.38037 * 120.07764 * 359.44452 * 22 21 20 24 24 C 1.50677 * 119.79824 * 179.73290 * 22 21 20 25 25 C 1.52899 * 109.53599 * 325.77548 * 24 22 21 26 26 C 1.50495 * 109.90945 * 48.64870 * 25 24 22 27 27 O 1.21291 * 119.61898 * 144.78476 * 26 25 24 28 28 N 1.34559 * 120.76102 * 324.75647 * 26 25 24 29 29 H 1.08997 * 109.46707 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46713 * 299.99975 * 1 2 3 31 31 H 1.09002 * 109.47164 * 60.00048 * 1 2 3 32 32 H 1.09003 * 109.47189 * 60.00309 * 3 2 1 33 33 H 1.08996 * 109.47268 * 299.99855 * 3 2 1 34 34 H 1.09010 * 109.47077 * 304.99910 * 4 3 2 35 35 H 1.09002 * 109.47152 * 185.00151 * 4 3 2 36 36 H 1.08996 * 109.47330 * 30.00071 * 6 5 4 37 37 H 1.09007 * 109.46633 * 149.99582 * 6 5 4 38 38 H 0.97004 * 120.00473 * 180.02562 * 10 9 7 39 39 H 0.96999 * 119.99789 * 4.58472 * 17 15 5 40 40 H 1.07997 * 119.98769 * 359.97438 * 19 18 17 41 41 H 1.08005 * 120.00532 * 179.97438 * 20 19 18 42 42 H 1.08005 * 120.01465 * 180.28707 * 23 22 21 43 43 H 1.09001 * 109.45802 * 205.76161 * 24 22 21 44 44 H 1.09000 * 109.44875 * 85.79219 * 24 22 21 45 45 H 1.08991 * 109.39989 * 288.50820 * 25 24 22 46 46 H 1.09003 * 109.39603 * 168.77668 * 25 24 22 47 47 H 0.96994 * 119.77813 * 180.82284 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1053 -0.8920 -1.3426 7 6 5.5010 -1.2977 -0.9449 8 1 6.2196 -0.5458 -0.6537 9 6 5.8607 -2.6287 -0.9525 10 7 7.0786 -2.9828 -0.6049 11 14 4.6180 -3.9291 -1.4568 12 1 4.7037 -4.1538 -2.9223 13 1 4.9121 -5.1979 -0.7435 14 1 3.2503 -3.4693 -1.1057 15 6 4.2616 1.3338 -2.3218 16 8 4.6265 0.8190 -3.3610 17 7 4.1428 2.6738 -2.2388 18 6 4.3464 3.4668 -3.3758 19 6 5.3018 3.1015 -4.3153 20 6 5.5023 3.8822 -5.4357 21 6 4.7427 5.0311 -5.6263 22 6 3.7928 5.3979 -4.6846 23 6 3.5924 4.6175 -3.5637 24 6 2.9760 6.6470 -4.8922 25 6 3.8291 7.7052 -5.5925 26 6 4.5173 7.1006 -6.7865 27 8 4.6858 7.7701 -7.7838 28 7 4.9483 5.8262 -6.7603 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1766 0.0889 36 1 3.3853 -1.3628 -0.6733 37 1 3.9121 -1.2113 -2.3668 38 1 7.3318 -3.9192 -0.6107 39 1 3.9163 3.0891 -1.3920 40 1 5.8879 2.2063 -4.1690 41 1 6.2456 3.5982 -6.1661 42 1 2.8492 4.9017 -2.8334 43 1 2.6445 7.0287 -3.9265 44 1 2.1075 6.4145 -5.5084 45 1 4.5775 8.0851 -4.8972 46 1 3.1910 8.5261 -5.9197 47 1 5.4007 5.4547 -7.5337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078475941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:14 Heat of formation + Delta-G solvation = -97.644730 kcal Electronic energy + Delta-G solvation = -30516.600128 eV Core-core repulsion = 26277.686060 eV Total energy + Delta-G solvation = -4238.914068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.09682 -41.39670 -39.67023 -38.76278 -37.12233 -36.43186 -35.04373 -34.86634 -34.33306 -31.39687 -31.00332 -30.03650 -28.70224 -27.07944 -25.59195 -24.83919 -24.04320 -23.82056 -23.20236 -21.23034 -19.96671 -19.34608 -19.08077 -18.83532 -18.08746 -17.94379 -17.25767 -16.91406 -16.81927 -16.58546 -16.29375 -15.85583 -15.75292 -15.63294 -15.26376 -15.06153 -14.88608 -14.56582 -14.46378 -14.17730 -14.07799 -13.78793 -13.53723 -13.46465 -13.12822 -12.86679 -12.80228 -12.70033 -12.48972 -12.44811 -12.31791 -12.00830 -11.93941 -11.79936 -11.70700 -11.14534 -10.97363 -10.79207 -10.63144 -10.51682 -9.76473 -9.43523 -8.56702 -8.30825 -6.33973 0.14724 0.36272 1.34283 1.37401 1.46830 1.47941 1.71940 2.07230 2.19246 2.33878 2.82434 2.95324 2.96617 3.06381 3.43032 3.72525 3.79210 4.04156 4.14678 4.20888 4.28902 4.32961 4.35473 4.40364 4.43077 4.50722 4.57431 4.63076 4.79949 4.85852 4.90196 4.93766 4.94255 4.97444 5.00768 5.02312 5.17150 5.24397 5.40240 5.49837 5.54361 5.62423 5.68776 5.96399 6.04379 6.21801 6.30170 6.37822 6.66825 6.95394 7.05735 7.27571 7.63308 8.86024 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013593 B = 0.002713 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.411845 B =10317.809434 C =11753.214062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.417 6.417 3 C 0.047 3.953 4 C 0.103 3.897 5 N -0.602 5.602 6 C 0.252 3.748 7 C -0.530 4.530 8 H 0.031 0.969 9 C 0.013 3.987 10 N -0.946 5.946 11 Si 0.942 3.058 12 H -0.278 1.278 13 H -0.275 1.275 14 H -0.240 1.240 15 C 0.695 3.305 16 O -0.619 6.619 17 N -0.673 5.673 18 C 0.140 3.860 19 C -0.118 4.118 20 C -0.132 4.132 21 C 0.128 3.872 22 C -0.099 4.099 23 C -0.099 4.099 24 C -0.068 4.068 25 C -0.133 4.133 26 C 0.515 3.485 27 O -0.579 6.579 28 N -0.658 5.658 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.053 0.947 37 H 0.011 0.989 38 H 0.267 0.733 39 H 0.420 0.580 40 H 0.109 0.891 41 H 0.135 0.865 42 H 0.171 0.829 43 H 0.128 0.872 44 H 0.090 0.910 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.761 21.908 -0.346 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.031 4.031 4 C -0.020 4.020 5 N -0.335 5.335 6 C 0.129 3.871 7 C -0.569 4.569 8 H 0.049 0.951 9 C -0.185 4.185 10 N -0.587 5.587 11 Si 0.765 3.235 12 H -0.204 1.204 13 H -0.201 1.201 14 H -0.164 1.164 15 C 0.397 3.603 16 O -0.498 6.498 17 N -0.325 5.325 18 C 0.045 3.955 19 C -0.140 4.140 20 C -0.153 4.153 21 C 0.032 3.968 22 C -0.102 4.102 23 C -0.120 4.120 24 C -0.105 4.105 25 C -0.172 4.172 26 C 0.306 3.694 27 O -0.459 6.459 28 N -0.301 5.301 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.260 0.740 40 H 0.127 0.873 41 H 0.153 0.847 42 H 0.189 0.811 43 H 0.146 0.854 44 H 0.108 0.892 45 H 0.137 0.863 46 H 0.143 0.857 47 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -15.323 21.642 -1.379 26.553 hybrid contribution 0.620 -1.367 -0.375 1.547 sum -14.703 20.276 -1.754 25.107 Atomic orbital electron populations 1.22859 0.79925 1.03161 1.00852 1.87994 1.21164 1.28894 1.95564 1.23174 0.92764 0.85009 1.02117 1.21875 0.93635 0.99911 0.86598 1.47060 1.68242 1.07119 1.11102 1.19130 0.94932 0.76638 0.96369 1.21623 0.97556 0.92834 1.44917 0.95086 1.25752 0.97190 1.00918 0.94631 1.70043 1.20442 1.18003 1.50195 0.85797 0.80745 0.78456 0.78482 1.20362 1.20060 1.16354 1.16113 0.78547 0.81737 0.83924 1.90859 1.54382 1.73560 1.31039 1.42526 1.74116 1.03541 1.12269 1.17718 0.96119 0.92931 0.88776 1.21109 0.97842 0.99673 0.95328 1.20744 1.00852 0.95024 0.98686 1.17649 0.97600 0.92648 0.88878 1.19525 0.97260 0.99208 0.94190 1.20777 0.99017 0.93618 0.98555 1.20513 0.96552 0.89462 1.04003 1.21768 1.01257 0.99888 0.94275 1.21509 0.77130 0.80567 0.90224 1.90757 1.58220 1.60818 1.36110 1.43646 1.57766 1.12053 1.16681 0.89972 0.92016 0.93742 0.88647 0.92585 0.89997 0.86618 0.92910 0.97117 0.92405 0.73997 0.87333 0.84741 0.81149 0.85397 0.89185 0.86268 0.85727 0.75123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.42 -11.67 9.53 -148.98 -1.42 -13.08 16 3 C 0.05 0.97 6.28 71.98 0.45 1.43 16 4 C 0.10 2.76 5.62 86.38 0.49 3.25 16 5 N -0.60 -23.77 2.42 -844.19 -2.04 -25.81 16 6 C 0.25 12.49 4.05 85.63 0.35 12.84 16 7 C -0.53 -31.40 9.94 25.60 0.25 -31.14 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 9 C 0.01 0.77 5.47 84.66 0.46 1.23 16 10 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 11 Si 0.94 45.68 27.47 68.60 1.88 47.56 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.24 -10.73 6.54 99.48 0.65 -10.08 16 15 C 0.69 27.53 8.12 179.05 1.45 28.99 16 16 O -0.62 -30.84 13.35 -3.98 -0.05 -30.89 16 17 N -0.67 -18.17 5.22 -317.04 -1.66 -19.83 16 18 C 0.14 3.60 6.30 38.12 0.24 3.84 16 19 C -0.12 -3.66 8.69 22.38 0.19 -3.47 16 20 C -0.13 -3.27 9.92 22.41 0.22 -3.05 16 21 C 0.13 2.58 6.51 38.14 0.25 2.83 16 22 C -0.10 -1.55 5.65 -19.81 -0.11 -1.66 16 23 C -0.10 -1.61 9.60 22.37 0.21 -1.39 16 24 C -0.07 -0.56 5.99 29.81 0.18 -0.38 16 25 C -0.13 -1.37 6.08 29.75 0.18 -1.19 16 26 C 0.51 10.06 7.72 87.63 0.68 10.74 16 27 O -0.58 -15.93 17.91 -3.06 -0.05 -15.99 16 28 N -0.66 -12.50 5.37 -303.92 -1.63 -14.13 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 2.51 8.07 -2.38 -0.02 2.49 16 35 H 0.12 2.13 6.30 -2.39 -0.02 2.12 16 36 H 0.05 2.53 6.17 -2.39 -0.01 2.52 16 37 H 0.01 0.58 6.85 -2.38 -0.02 0.56 16 38 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.42 7.61 6.52 -92.71 -0.60 7.00 16 40 H 0.11 4.34 6.22 -2.91 -0.02 4.32 16 41 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.13 0.23 8.06 -2.39 -0.02 0.21 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.41 7.31 8.83 -92.71 -0.82 6.49 16 Total: -1.00 -89.17 387.58 1.62 -87.56 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.46 Total: 20.07 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 6.75 Total: 24.65 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -5.03 Total: -119.88 kcal Atomic # 8 Polarization: -58.43 SS G_CDS: -1.53 Total: -59.96 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.56 kcal Total: -89.17 1.62 -87.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078475941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.088 kcal (2) G-P(sol) polarization free energy of solvation -89.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds