Wall clock time and date at job start Wed Apr 1 2020 04:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99875 * 2 1 4 4 C 1.52993 * 109.46940 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47263 * 65.00037 * 4 3 2 6 6 C 1.46500 * 119.99985 * 269.99826 * 5 4 3 7 7 C 1.50696 * 109.47280 * 269.99674 * 6 5 4 8 8 H 1.07998 * 120.00194 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99964 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99690 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 119.99999 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47158 * 90.00095 * 11 9 7 13 13 H 1.48504 * 109.47138 * 209.99590 * 11 9 7 14 14 H 1.48495 * 109.47361 * 330.00049 * 11 9 7 15 15 C 1.34780 * 119.99887 * 89.99923 * 5 4 3 16 16 O 1.21282 * 119.99670 * 180.02562 * 15 5 4 17 17 C 1.50695 * 120.00258 * 0.02562 * 15 5 4 18 18 C 1.52995 * 109.47367 * 179.97438 * 17 15 5 19 19 S 1.81397 * 109.47346 * 179.97438 * 18 17 15 20 20 O 1.42099 * 108.57771 * 65.51586 * 19 18 17 21 21 O 1.42103 * 108.57985 * 294.48973 * 19 18 17 22 22 C 1.81398 * 101.92179 * 180.02562 * 19 18 17 23 23 C 1.54961 * 110.92525 * 66.54120 * 22 19 18 24 24 C 1.54270 * 104.16191 * 156.29525 * 23 22 19 25 25 C 1.53869 * 106.63967 * 336.44607 * 24 23 22 26 26 C 1.54268 * 106.60115 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46741 * 59.99781 * 1 2 3 28 28 H 1.08997 * 109.46836 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46596 * 299.99970 * 1 2 3 30 30 H 1.09004 * 109.47068 * 60.00272 * 3 2 1 31 31 H 1.08997 * 109.47296 * 300.00192 * 3 2 1 32 32 H 1.08999 * 109.47075 * 304.99765 * 4 3 2 33 33 H 1.09004 * 109.47302 * 185.00063 * 4 3 2 34 34 H 1.08996 * 109.46999 * 30.00009 * 6 5 4 35 35 H 1.08997 * 109.47203 * 149.99804 * 6 5 4 36 36 H 0.97003 * 119.99504 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.47198 * 60.00225 * 17 15 5 38 38 H 1.08997 * 109.47177 * 300.00012 * 17 15 5 39 39 H 1.09007 * 109.47009 * 59.99657 * 18 17 15 40 40 H 1.09003 * 109.47325 * 300.00505 * 18 17 15 41 41 H 1.09001 * 110.67506 * 303.23275 * 22 19 18 42 42 H 1.08997 * 110.47708 * 37.64123 * 23 22 19 43 43 H 1.09002 * 110.53308 * 274.97515 * 23 22 19 44 44 H 1.09002 * 110.03399 * 217.13605 * 24 23 22 45 45 H 1.08995 * 110.02943 * 95.75505 * 24 23 22 46 46 H 1.08999 * 110.03405 * 119.26051 * 25 24 23 47 47 H 1.09001 * 110.03705 * 240.64196 * 25 24 23 48 48 H 1.08997 * 110.48788 * 142.28685 * 26 25 24 49 49 H 1.09000 * 110.48806 * 264.79985 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8920 -1.3428 7 6 5.5010 -1.2978 -0.9450 8 1 6.2196 -0.5460 -0.6538 9 6 5.8603 -2.6289 -0.9518 10 7 7.0783 -2.9830 -0.6042 11 14 4.6172 -3.9293 -1.4547 12 1 4.7025 -4.1552 -2.9200 13 1 4.9113 -5.1977 -0.7405 14 1 3.2498 -3.4690 -1.1036 15 6 4.2615 1.3338 -2.3218 16 8 4.6255 0.8203 -3.3585 17 6 4.1288 2.8320 -2.2291 18 6 4.5111 3.4619 -3.5699 19 16 4.3506 5.2653 -3.4585 20 8 5.3109 5.7487 -2.5293 21 8 2.9794 5.5871 -3.2698 22 6 4.8426 5.7889 -5.1241 23 6 3.8149 5.3107 -6.1807 24 6 4.0004 6.2902 -7.3581 25 6 4.6126 7.5740 -6.7709 26 6 4.7776 7.3309 -5.2564 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9786 2.1765 0.0889 34 1 3.3853 -1.3629 -0.6734 35 1 3.9120 -1.2114 -2.3668 36 1 7.3312 -3.9194 -0.6093 37 1 4.7914 3.2079 -1.4495 38 1 3.0983 3.0912 -1.9861 39 1 3.8488 3.0860 -4.3499 40 1 5.5417 3.2027 -3.8125 41 1 5.8408 5.4225 -5.3636 42 1 2.8016 5.3778 -5.7848 43 1 4.0360 4.2906 -6.4948 44 1 3.0359 6.5117 -7.8151 45 1 4.6743 5.8601 -8.0989 46 1 5.5841 7.7665 -7.2262 47 1 3.9457 8.4186 -6.9437 48 1 5.7010 7.7839 -4.8957 49 1 3.9210 7.7268 -4.7109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103215620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:12 Heat of formation + Delta-G solvation = -158.705042 kcal Electronic energy + Delta-G solvation = -29579.437011 eV Core-core repulsion = 25441.026369 eV Total energy + Delta-G solvation = -4138.410641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.41496 -38.34702 -37.64254 -37.10247 -36.18393 -35.05174 -33.26888 -32.41492 -29.87843 -29.61498 -29.24404 -27.91485 -26.08933 -25.05459 -22.74968 -22.11734 -21.48829 -20.74602 -18.99350 -18.58548 -17.63070 -16.94787 -16.91057 -16.44504 -16.24423 -16.06545 -15.84932 -15.33838 -15.30173 -15.02773 -14.60680 -14.42024 -14.04690 -13.93795 -13.50892 -13.33810 -13.02610 -12.74186 -12.37934 -12.25611 -12.15926 -12.14974 -12.00281 -11.96531 -11.79833 -11.74679 -11.62929 -11.54398 -11.45718 -11.37566 -11.02468 -10.96918 -10.84790 -10.80321 -10.48875 -10.38350 -10.08734 -9.56209 -9.49797 -9.11532 -8.53371 -7.74133 -6.04153 -4.02107 -0.21217 2.53255 3.20895 3.27902 3.34270 3.39921 3.44254 3.65675 3.77801 3.93709 3.98177 4.14338 4.37482 4.44923 4.45439 4.69661 4.82830 4.84823 4.87073 4.92169 5.07844 5.14047 5.21840 5.23399 5.29276 5.30165 5.36130 5.41481 5.45537 5.49145 5.49525 5.56792 5.59272 5.63807 5.65204 5.68563 5.74528 5.76262 5.88564 6.15781 6.88856 7.03726 7.28857 7.33491 7.67834 8.21936 8.50479 8.87242 8.99321 9.56769 11.09255 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.002869 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.759926 B = 9758.772261 C =10736.752382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.040 3.960 4 C 0.106 3.894 5 N -0.582 5.582 6 C 0.219 3.781 7 C -0.528 4.528 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.900 5.900 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.514 3.486 16 O -0.536 6.536 17 C -0.136 4.136 18 C -0.588 4.588 19 S 2.415 3.585 20 O -0.937 6.937 21 O -0.937 6.937 22 C -0.581 4.581 23 C -0.111 4.111 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.104 4.104 27 H 0.037 0.963 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 20.178 -7.700 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C -0.038 4.038 4 C -0.018 4.018 5 N -0.313 5.313 6 C 0.099 3.901 7 C -0.567 4.567 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.539 5.539 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.299 3.701 16 O -0.414 6.414 17 C -0.177 4.177 18 C -0.718 4.718 19 S 2.599 3.401 20 O -0.934 6.934 21 O -0.934 6.934 22 C -0.690 4.690 23 C -0.150 4.150 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.142 4.142 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.103 0.897 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.494 20.074 -7.483 23.856 hybrid contribution -0.339 -1.059 -0.822 1.383 sum -10.833 19.015 -8.305 23.408 Atomic orbital electron populations 1.22717 0.81858 1.02560 0.99431 1.88057 1.18918 1.27176 1.95222 1.23165 0.95145 0.85402 1.00054 1.21629 0.91264 0.99541 0.89365 1.47832 1.64329 1.09023 1.10101 1.19715 0.97786 0.74683 0.97958 1.21365 0.96138 0.93580 1.45582 0.90840 1.24830 0.95169 0.98350 0.94639 1.69905 1.18192 1.17238 1.48529 0.86866 0.82526 0.81349 0.79152 1.20109 1.21188 1.18611 1.19911 0.78338 0.87629 0.84205 1.90662 1.46606 1.74671 1.29421 1.21465 1.04189 0.96317 0.95751 1.30067 1.12946 1.22651 1.06125 1.08173 0.75764 0.78552 0.77623 1.93589 1.63010 1.78462 1.58383 1.93567 1.32791 1.82577 1.84501 1.31276 1.10318 1.06376 1.21033 1.22322 0.97666 1.00503 0.94460 1.22084 1.01374 0.94904 0.97365 1.22100 1.01395 0.98124 0.94038 1.22174 1.03384 0.89994 0.98645 0.94434 0.89859 0.94400 0.92476 0.93459 0.88362 0.89516 0.93755 0.94927 0.92657 0.87606 0.88125 0.84220 0.83970 0.83920 0.89407 0.89560 0.91119 0.91236 0.91250 0.91136 0.89721 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -6.01 9.53 -35.23 -0.34 -6.35 16 3 C 0.04 0.54 6.28 37.15 0.23 0.77 16 4 C 0.11 1.67 5.62 -4.05 -0.02 1.65 16 5 N -0.58 -11.93 2.42 -175.07 -0.42 -12.35 16 6 C 0.22 5.45 4.05 -5.20 -0.02 5.43 16 7 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 8 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 11 Si 0.87 22.02 27.47 -169.99 -4.67 17.36 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 15 C 0.51 10.12 7.67 -10.99 -0.08 10.04 16 16 O -0.54 -12.58 15.56 5.56 0.09 -12.49 16 17 C -0.14 -1.90 4.26 -27.89 -0.12 -2.02 16 18 C -0.59 -6.81 4.94 37.16 0.18 -6.62 16 19 S 2.41 25.49 4.32 -107.50 -0.46 25.03 16 20 O -0.94 -12.83 18.10 -57.83 -1.05 -13.88 16 21 O -0.94 -11.91 17.45 -57.83 -1.01 -12.92 16 22 C -0.58 -4.53 3.29 -24.70 -0.08 -4.61 16 23 C -0.11 -0.80 6.05 -25.03 -0.15 -0.95 16 24 C -0.12 -0.75 6.80 -25.61 -0.17 -0.93 16 25 C -0.12 -0.74 6.80 -25.62 -0.17 -0.91 16 26 C -0.10 -0.77 6.28 -25.07 -0.16 -0.93 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.59 7.30 -51.93 -0.38 0.21 16 32 H 0.10 1.64 8.07 -51.93 -0.42 1.22 16 33 H 0.09 1.07 6.44 -51.93 -0.33 0.73 16 34 H 0.04 1.10 6.17 -51.93 -0.32 0.78 16 35 H 0.03 0.87 6.85 -51.93 -0.36 0.51 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 37 H 0.11 1.32 7.40 -51.93 -0.38 0.93 16 38 H 0.10 1.16 7.26 -51.93 -0.38 0.78 16 39 H 0.14 1.44 8.02 -51.92 -0.42 1.02 16 40 H 0.14 1.59 8.10 -51.92 -0.42 1.17 16 41 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.64 7.50 -51.93 -0.39 0.25 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 LS Contribution 405.12 15.07 6.11 6.11 Total: -1.00 -39.63 405.12 -9.34 -48.97 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.46 Total: -0.96 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 0.10 Total: -11.23 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.35 Total: -39.63 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -2.30 Total: -45.64 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.36 kcal Atomic # 16 Polarization: 25.49 SS G_CDS: -0.46 Total: 25.03 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -39.63 -9.34 -48.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.736 kcal (2) G-P(sol) polarization free energy of solvation -39.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds