Wall clock time and date at job start Wed Apr 1 2020 04:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99875 * 2 1 4 4 C 1.52993 * 109.46940 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47263 * 65.00037 * 4 3 2 6 6 C 1.46500 * 119.99985 * 269.99826 * 5 4 3 7 7 C 1.50696 * 109.47280 * 269.99674 * 6 5 4 8 8 H 1.07998 * 120.00194 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99964 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99690 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 119.99999 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47158 * 90.00095 * 11 9 7 13 13 H 1.48504 * 109.47138 * 209.99590 * 11 9 7 14 14 H 1.48495 * 109.47361 * 330.00049 * 11 9 7 15 15 C 1.34780 * 119.99887 * 89.99923 * 5 4 3 16 16 O 1.21282 * 119.99670 * 180.02562 * 15 5 4 17 17 C 1.50695 * 120.00258 * 0.02562 * 15 5 4 18 18 C 1.52995 * 109.47367 * 179.97438 * 17 15 5 19 19 S 1.81397 * 109.47346 * 179.97438 * 18 17 15 20 20 O 1.42099 * 108.57771 * 65.51586 * 19 18 17 21 21 O 1.42103 * 108.57985 * 294.48973 * 19 18 17 22 22 C 1.81398 * 101.92179 * 180.02562 * 19 18 17 23 23 C 1.54961 * 110.92525 * 66.54120 * 22 19 18 24 24 C 1.54270 * 104.16191 * 156.29525 * 23 22 19 25 25 C 1.53869 * 106.63967 * 336.44607 * 24 23 22 26 26 C 1.54268 * 106.60115 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46741 * 59.99781 * 1 2 3 28 28 H 1.08997 * 109.46836 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46596 * 299.99970 * 1 2 3 30 30 H 1.09004 * 109.47068 * 60.00272 * 3 2 1 31 31 H 1.08997 * 109.47296 * 300.00192 * 3 2 1 32 32 H 1.08999 * 109.47075 * 304.99765 * 4 3 2 33 33 H 1.09004 * 109.47302 * 185.00063 * 4 3 2 34 34 H 1.08996 * 109.46999 * 30.00009 * 6 5 4 35 35 H 1.08997 * 109.47203 * 149.99804 * 6 5 4 36 36 H 0.97003 * 119.99504 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.47198 * 60.00225 * 17 15 5 38 38 H 1.08997 * 109.47177 * 300.00012 * 17 15 5 39 39 H 1.09007 * 109.47009 * 59.99657 * 18 17 15 40 40 H 1.09003 * 109.47325 * 300.00505 * 18 17 15 41 41 H 1.09001 * 110.67506 * 303.23275 * 22 19 18 42 42 H 1.08997 * 110.47708 * 37.64123 * 23 22 19 43 43 H 1.09002 * 110.53308 * 274.97515 * 23 22 19 44 44 H 1.09002 * 110.03399 * 217.13605 * 24 23 22 45 45 H 1.08995 * 110.02943 * 95.75505 * 24 23 22 46 46 H 1.08999 * 110.03405 * 119.26051 * 25 24 23 47 47 H 1.09001 * 110.03705 * 240.64196 * 25 24 23 48 48 H 1.08997 * 110.48788 * 142.28685 * 26 25 24 49 49 H 1.09000 * 110.48806 * 264.79985 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8920 -1.3428 7 6 5.5010 -1.2978 -0.9450 8 1 6.2196 -0.5460 -0.6538 9 6 5.8603 -2.6289 -0.9518 10 7 7.0783 -2.9830 -0.6042 11 14 4.6172 -3.9293 -1.4547 12 1 4.7025 -4.1552 -2.9200 13 1 4.9113 -5.1977 -0.7405 14 1 3.2498 -3.4690 -1.1036 15 6 4.2615 1.3338 -2.3218 16 8 4.6255 0.8203 -3.3585 17 6 4.1288 2.8320 -2.2291 18 6 4.5111 3.4619 -3.5699 19 16 4.3506 5.2653 -3.4585 20 8 5.3109 5.7487 -2.5293 21 8 2.9794 5.5871 -3.2698 22 6 4.8426 5.7889 -5.1241 23 6 3.8149 5.3107 -6.1807 24 6 4.0004 6.2902 -7.3581 25 6 4.6126 7.5740 -6.7709 26 6 4.7776 7.3309 -5.2564 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9786 2.1765 0.0889 34 1 3.3853 -1.3629 -0.6734 35 1 3.9120 -1.2114 -2.3668 36 1 7.3312 -3.9194 -0.6093 37 1 4.7914 3.2079 -1.4495 38 1 3.0983 3.0912 -1.9861 39 1 3.8488 3.0860 -4.3499 40 1 5.5417 3.2027 -3.8125 41 1 5.8408 5.4225 -5.3636 42 1 2.8016 5.3778 -5.7848 43 1 4.0360 4.2906 -6.4948 44 1 3.0359 6.5117 -7.8151 45 1 4.6743 5.8601 -8.0989 46 1 5.5841 7.7665 -7.2262 47 1 3.9457 8.4186 -6.9437 48 1 5.7010 7.7839 -4.8957 49 1 3.9210 7.7268 -4.7109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103215620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:10 Heat of formation + Delta-G solvation = -188.454364 kcal Electronic energy + Delta-G solvation = -29580.727038 eV Core-core repulsion = 25441.026369 eV Total energy + Delta-G solvation = -4139.700669 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.92844 -38.90098 -38.78431 -38.02371 -37.12463 -36.63867 -34.89506 -34.12424 -31.39140 -30.19828 -29.81270 -29.51692 -27.09394 -26.42707 -24.11247 -23.66730 -22.25689 -21.25397 -20.04778 -19.80295 -19.12803 -18.66336 -17.94286 -17.43475 -17.32109 -17.10848 -16.84765 -16.57195 -16.51161 -16.13948 -15.97886 -15.63490 -15.02429 -14.87736 -14.60345 -14.48236 -14.28804 -14.01763 -13.81882 -13.75143 -13.27924 -13.20383 -13.10538 -13.09478 -12.93517 -12.71928 -12.57033 -12.52994 -12.42838 -12.22276 -12.09573 -12.02950 -12.01218 -11.94444 -11.83776 -11.73430 -11.28926 -11.26886 -10.82197 -10.73036 -10.54351 -9.43669 -8.33751 -6.37508 -1.05211 1.32479 1.34452 1.45940 1.70504 1.72173 2.18481 2.31531 2.58090 2.93441 2.94231 3.01808 3.32797 3.36565 3.49700 3.65177 3.78405 3.89261 4.10207 4.14378 4.31984 4.33964 4.37127 4.39473 4.40527 4.48182 4.51564 4.54898 4.57034 4.62182 4.74165 4.78309 4.84774 4.87075 4.93284 4.97385 5.00326 5.01910 5.06612 5.20530 5.23187 5.43501 5.46931 5.60419 6.23725 6.30736 6.63337 6.67942 7.20933 7.35659 8.83140 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.002869 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.759926 B = 9758.772261 C =10736.752382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.042 3.958 4 C 0.097 3.903 5 N -0.593 5.593 6 C 0.234 3.766 7 C -0.534 4.534 8 H 0.031 0.969 9 C 0.013 3.987 10 N -0.945 5.945 11 Si 0.944 3.056 12 H -0.274 1.274 13 H -0.274 1.274 14 H -0.243 1.243 15 C 0.504 3.496 16 O -0.584 6.584 17 C -0.135 4.135 18 C -0.596 4.596 19 S 2.432 3.568 20 O -0.971 6.971 21 O -0.959 6.959 22 C -0.565 4.565 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.115 4.115 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.050 0.950 35 H 0.014 0.986 36 H 0.268 0.732 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.164 0.836 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.681 21.617 -8.533 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.035 4.035 4 C -0.026 4.026 5 N -0.323 5.323 6 C 0.111 3.889 7 C -0.573 4.573 8 H 0.050 0.950 9 C -0.185 4.185 10 N -0.586 5.586 11 Si 0.767 3.233 12 H -0.200 1.200 13 H -0.199 1.199 14 H -0.167 1.167 15 C 0.292 3.708 16 O -0.464 6.464 17 C -0.176 4.176 18 C -0.724 4.724 19 S 2.619 3.381 20 O -0.968 6.968 21 O -0.956 6.956 22 C -0.677 4.677 23 C -0.158 4.158 24 C -0.159 4.159 25 C -0.156 4.156 26 C -0.154 4.154 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.139 0.861 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.169 0.831 40 H 0.160 0.840 41 H 0.181 0.819 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.110 0.890 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.552 21.535 -8.244 26.254 hybrid contribution 0.348 -1.410 -0.577 1.563 sum -12.204 20.125 -8.820 25.135 Atomic orbital electron populations 1.22885 0.79881 1.03264 1.00935 1.87988 1.21236 1.28747 1.95580 1.23207 0.92924 0.85061 1.02318 1.21983 0.93630 1.00463 0.86523 1.47908 1.64592 1.07515 1.12244 1.19244 0.95072 0.78072 0.96462 1.21608 0.97474 0.92992 1.45236 0.95024 1.25783 0.97271 1.00929 0.94542 1.70048 1.20428 1.18081 1.49994 0.85762 0.80523 0.78355 0.78655 1.19982 1.19947 1.16673 1.20879 0.76829 0.89931 0.83137 1.90623 1.48568 1.76104 1.31155 1.21543 1.06514 0.91704 0.97820 1.30167 1.13295 1.23714 1.05259 1.07584 0.74682 0.77355 0.78484 1.93544 1.63680 1.78675 1.60917 1.93530 1.33978 1.82504 1.85596 1.31148 1.11645 1.06921 1.17991 1.22471 0.97310 1.01487 0.94569 1.22134 1.02074 0.94651 0.97085 1.22136 1.02191 0.98449 0.92861 1.22348 1.03789 0.89418 0.99824 0.93563 0.89716 0.92171 0.88849 0.92291 0.90101 0.86127 0.93224 0.96830 0.92308 0.86118 0.85228 0.83112 0.83991 0.81859 0.89583 0.88554 0.90377 0.90520 0.90353 0.90253 0.88981 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.42 -12.63 9.53 -148.98 -1.42 -14.04 16 3 C 0.04 1.03 6.28 71.98 0.45 1.48 16 4 C 0.10 2.94 5.62 86.38 0.49 3.42 16 5 N -0.59 -24.41 2.42 -826.18 -2.00 -26.41 16 6 C 0.23 11.85 4.05 85.63 0.35 12.20 16 7 C -0.53 -32.17 9.94 25.60 0.25 -31.91 16 8 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 9 C 0.01 0.76 5.47 84.65 0.46 1.23 16 10 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 11 Si 0.94 46.04 27.47 68.60 1.88 47.93 16 12 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.24 -11.05 6.54 99.48 0.65 -10.40 16 15 C 0.50 19.92 7.67 87.65 0.67 20.59 16 16 O -0.58 -28.01 15.56 -3.04 -0.05 -28.06 16 17 C -0.14 -3.61 4.26 29.84 0.13 -3.48 16 18 C -0.60 -13.15 4.94 71.98 0.36 -12.80 16 19 S 2.43 47.93 4.32 -56.49 -0.24 47.68 16 20 O -0.97 -25.64 18.10 -127.37 -2.31 -27.94 16 21 O -0.96 -22.89 17.45 -127.37 -2.22 -25.11 16 22 C -0.56 -7.65 3.29 31.91 0.11 -7.54 16 23 C -0.12 -1.46 6.05 31.70 0.19 -1.27 16 24 C -0.12 -1.22 6.80 31.32 0.21 -1.01 16 25 C -0.12 -1.16 6.80 31.32 0.21 -0.95 16 26 C -0.12 -1.48 6.28 31.67 0.20 -1.28 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.06 1.30 7.30 -2.39 -0.02 1.28 16 32 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 33 H 0.12 2.75 6.44 -2.39 -0.02 2.73 16 34 H 0.05 2.46 6.17 -2.39 -0.01 2.44 16 35 H 0.01 0.74 6.85 -2.39 -0.02 0.72 16 36 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 37 H 0.12 2.84 7.40 -2.39 -0.02 2.82 16 38 H 0.13 2.67 7.26 -2.39 -0.02 2.65 16 39 H 0.15 2.94 8.02 -2.39 -0.02 2.92 16 40 H 0.14 3.12 8.10 -2.39 -0.02 3.10 16 41 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.09 1.09 7.50 -2.39 -0.02 1.07 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.08 1.02 8.05 -2.39 -0.02 1.00 16 Total: -1.00 -89.07 405.12 0.14 -88.94 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.86 Total: 16.93 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 5.33 Total: -19.52 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -1.70 Total: -86.80 kcal Atomic # 8 Polarization: -89.16 SS G_CDS: -5.99 Total: -95.16 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.88 Total: 47.93 kcal Atomic # 16 Polarization: 47.93 SS G_CDS: -0.24 Total: 47.68 kcal Total: -89.07 0.14 -88.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.516 kcal (2) G-P(sol) polarization free energy of solvation -89.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds