Wall clock time and date at job start Wed Apr 1 2020 04:13:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.42901 * 113.99875 * 2 1
4 4 C 1.52993 * 109.46940 * 180.02562 * 3 2 1
5 5 N 1.46499 * 109.47263 * 65.00037 * 4 3 2
6 6 C 1.46500 * 119.99985 * 269.99826 * 5 4 3
7 7 C 1.50696 * 109.47280 * 269.99674 * 6 5 4
8 8 H 1.07998 * 120.00194 * 0.02562 * 7 6 5
9 9 C 1.37879 * 119.99964 * 179.97438 * 7 6 5
10 10 N 1.31517 * 119.99690 * 180.02562 * 9 7 6
11 11 Si 1.86793 * 119.99999 * 0.02562 * 9 7 6
12 12 H 1.48500 * 109.47158 * 90.00095 * 11 9 7
13 13 H 1.48504 * 109.47138 * 209.99590 * 11 9 7
14 14 H 1.48495 * 109.47361 * 330.00049 * 11 9 7
15 15 C 1.34780 * 119.99887 * 89.99923 * 5 4 3
16 16 O 1.21282 * 119.99670 * 180.02562 * 15 5 4
17 17 C 1.50695 * 120.00258 * 0.02562 * 15 5 4
18 18 C 1.52995 * 109.47367 * 179.97438 * 17 15 5
19 19 S 1.81397 * 109.47346 * 179.97438 * 18 17 15
20 20 O 1.42099 * 108.57771 * 65.51586 * 19 18 17
21 21 O 1.42103 * 108.57985 * 294.48973 * 19 18 17
22 22 C 1.81398 * 101.92179 * 180.02562 * 19 18 17
23 23 C 1.54961 * 110.92525 * 66.54120 * 22 19 18
24 24 C 1.54270 * 104.16191 * 156.29525 * 23 22 19
25 25 C 1.53869 * 106.63967 * 336.44607 * 24 23 22
26 26 C 1.54268 * 106.60115 * 359.97438 * 25 24 23
27 27 H 1.08998 * 109.46741 * 59.99781 * 1 2 3
28 28 H 1.08997 * 109.46836 * 180.02562 * 1 2 3
29 29 H 1.08999 * 109.46596 * 299.99970 * 1 2 3
30 30 H 1.09004 * 109.47068 * 60.00272 * 3 2 1
31 31 H 1.08997 * 109.47296 * 300.00192 * 3 2 1
32 32 H 1.08999 * 109.47075 * 304.99765 * 4 3 2
33 33 H 1.09004 * 109.47302 * 185.00063 * 4 3 2
34 34 H 1.08996 * 109.46999 * 30.00009 * 6 5 4
35 35 H 1.08997 * 109.47203 * 149.99804 * 6 5 4
36 36 H 0.97003 * 119.99504 * 180.02562 * 10 9 7
37 37 H 1.09001 * 109.47198 * 60.00225 * 17 15 5
38 38 H 1.08997 * 109.47177 * 300.00012 * 17 15 5
39 39 H 1.09007 * 109.47009 * 59.99657 * 18 17 15
40 40 H 1.09003 * 109.47325 * 300.00505 * 18 17 15
41 41 H 1.09001 * 110.67506 * 303.23275 * 22 19 18
42 42 H 1.08997 * 110.47708 * 37.64123 * 23 22 19
43 43 H 1.09002 * 110.53308 * 274.97515 * 23 22 19
44 44 H 1.09002 * 110.03399 * 217.13605 * 24 23 22
45 45 H 1.08995 * 110.02943 * 95.75505 * 24 23 22
46 46 H 1.08999 * 110.03405 * 119.26051 * 25 24 23
47 47 H 1.09001 * 110.03705 * 240.64196 * 25 24 23
48 48 H 1.08997 * 110.48788 * 142.28685 * 26 25 24
49 49 H 1.09000 * 110.48806 * 264.79985 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 7 3.9757 0.5644 -1.2527
6 6 4.1052 -0.8920 -1.3428
7 6 5.5010 -1.2978 -0.9450
8 1 6.2196 -0.5460 -0.6538
9 6 5.8603 -2.6289 -0.9518
10 7 7.0783 -2.9830 -0.6042
11 14 4.6172 -3.9293 -1.4547
12 1 4.7025 -4.1552 -2.9200
13 1 4.9113 -5.1977 -0.7405
14 1 3.2498 -3.4690 -1.1036
15 6 4.2615 1.3338 -2.3218
16 8 4.6255 0.8203 -3.3585
17 6 4.1288 2.8320 -2.2291
18 6 4.5111 3.4619 -3.5699
19 16 4.3506 5.2653 -3.4585
20 8 5.3109 5.7487 -2.5293
21 8 2.9794 5.5871 -3.2698
22 6 4.8426 5.7889 -5.1241
23 6 3.8149 5.3107 -6.1807
24 6 4.0004 6.2902 -7.3581
25 6 4.6126 7.5740 -6.7709
26 6 4.7776 7.3309 -5.2564
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3632 0.5138 0.8900
30 1 1.6887 1.8464 0.8900
31 1 1.6886 1.8464 -0.8899
32 1 3.8514 0.5682 0.8409
33 1 3.9786 2.1765 0.0889
34 1 3.3853 -1.3629 -0.6734
35 1 3.9120 -1.2114 -2.3668
36 1 7.3312 -3.9194 -0.6093
37 1 4.7914 3.2079 -1.4495
38 1 3.0983 3.0912 -1.9861
39 1 3.8488 3.0860 -4.3499
40 1 5.5417 3.2027 -3.8125
41 1 5.8408 5.4225 -5.3636
42 1 2.8016 5.3778 -5.7848
43 1 4.0360 4.2906 -6.4948
44 1 3.0359 6.5117 -7.8151
45 1 4.6743 5.8601 -8.0989
46 1 5.5841 7.7665 -7.2262
47 1 3.9457 8.4186 -6.9437
48 1 5.7010 7.7839 -4.8957
49 1 3.9210 7.7268 -4.7109
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000103215620.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:13:10
Heat of formation + Delta-G solvation = -188.454364 kcal
Electronic energy + Delta-G solvation = -29580.727038 eV
Core-core repulsion = 25441.026369 eV
Total energy + Delta-G solvation = -4139.700669 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.165 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-40.92844 -38.90098 -38.78431 -38.02371 -37.12463 -36.63867 -34.89506 -34.12424
-31.39140 -30.19828 -29.81270 -29.51692 -27.09394 -26.42707 -24.11247 -23.66730
-22.25689 -21.25397 -20.04778 -19.80295 -19.12803 -18.66336 -17.94286 -17.43475
-17.32109 -17.10848 -16.84765 -16.57195 -16.51161 -16.13948 -15.97886 -15.63490
-15.02429 -14.87736 -14.60345 -14.48236 -14.28804 -14.01763 -13.81882 -13.75143
-13.27924 -13.20383 -13.10538 -13.09478 -12.93517 -12.71928 -12.57033 -12.52994
-12.42838 -12.22276 -12.09573 -12.02950 -12.01218 -11.94444 -11.83776 -11.73430
-11.28926 -11.26886 -10.82197 -10.73036 -10.54351 -9.43669 -8.33751 -6.37508
-1.05211 1.32479 1.34452 1.45940 1.70504 1.72173 2.18481 2.31531
2.58090 2.93441 2.94231 3.01808 3.32797 3.36565 3.49700 3.65177
3.78405 3.89261 4.10207 4.14378 4.31984 4.33964 4.37127 4.39473
4.40527 4.48182 4.51564 4.54898 4.57034 4.62182 4.74165 4.78309
4.84774 4.87075 4.93284 4.97385 5.00326 5.01910 5.06612 5.20530
5.23187 5.43501 5.46931 5.60419 6.23725 6.30736 6.63337 6.67942
7.20933 7.35659 8.83140
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.013082 B = 0.002869 C = 0.002607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2139.759926 B = 9758.772261 C =10736.752382
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.416 6.416
3 C 0.042 3.958
4 C 0.097 3.903
5 N -0.593 5.593
6 C 0.234 3.766
7 C -0.534 4.534
8 H 0.031 0.969
9 C 0.013 3.987
10 N -0.945 5.945
11 Si 0.944 3.056
12 H -0.274 1.274
13 H -0.274 1.274
14 H -0.243 1.243
15 C 0.504 3.496
16 O -0.584 6.584
17 C -0.135 4.135
18 C -0.596 4.596
19 S 2.432 3.568
20 O -0.971 6.971
21 O -0.959 6.959
22 C -0.565 4.565
23 C -0.120 4.120
24 C -0.121 4.121
25 C -0.118 4.118
26 C -0.115 4.115
27 H 0.046 0.954
28 H 0.084 0.916
29 H 0.060 0.940
30 H 0.094 0.906
31 H 0.059 0.941
32 H 0.080 0.920
33 H 0.121 0.879
34 H 0.050 0.950
35 H 0.014 0.986
36 H 0.268 0.732
37 H 0.121 0.879
38 H 0.130 0.870
39 H 0.151 0.849
40 H 0.142 0.858
41 H 0.164 0.836
42 H 0.086 0.914
43 H 0.096 0.904
44 H 0.078 0.922
45 H 0.076 0.924
46 H 0.078 0.922
47 H 0.079 0.921
48 H 0.092 0.908
49 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.681 21.617 -8.533 26.475
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.336 6.336
3 C -0.035 4.035
4 C -0.026 4.026
5 N -0.323 5.323
6 C 0.111 3.889
7 C -0.573 4.573
8 H 0.050 0.950
9 C -0.185 4.185
10 N -0.586 5.586
11 Si 0.767 3.233
12 H -0.200 1.200
13 H -0.199 1.199
14 H -0.167 1.167
15 C 0.292 3.708
16 O -0.464 6.464
17 C -0.176 4.176
18 C -0.724 4.724
19 S 2.619 3.381
20 O -0.968 6.968
21 O -0.956 6.956
22 C -0.677 4.677
23 C -0.158 4.158
24 C -0.159 4.159
25 C -0.156 4.156
26 C -0.154 4.154
27 H 0.064 0.936
28 H 0.103 0.897
29 H 0.078 0.922
30 H 0.112 0.888
31 H 0.077 0.923
32 H 0.099 0.901
33 H 0.139 0.861
34 H 0.068 0.932
35 H 0.032 0.968
36 H 0.077 0.923
37 H 0.139 0.861
38 H 0.148 0.852
39 H 0.169 0.831
40 H 0.160 0.840
41 H 0.181 0.819
42 H 0.104 0.896
43 H 0.114 0.886
44 H 0.096 0.904
45 H 0.095 0.905
46 H 0.096 0.904
47 H 0.097 0.903
48 H 0.110 0.890
49 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -12.552 21.535 -8.244 26.254
hybrid contribution 0.348 -1.410 -0.577 1.563
sum -12.204 20.125 -8.820 25.135
Atomic orbital electron populations
1.22885 0.79881 1.03264 1.00935 1.87988 1.21236 1.28747 1.95580
1.23207 0.92924 0.85061 1.02318 1.21983 0.93630 1.00463 0.86523
1.47908 1.64592 1.07515 1.12244 1.19244 0.95072 0.78072 0.96462
1.21608 0.97474 0.92992 1.45236 0.95024 1.25783 0.97271 1.00929
0.94542 1.70048 1.20428 1.18081 1.49994 0.85762 0.80523 0.78355
0.78655 1.19982 1.19947 1.16673 1.20879 0.76829 0.89931 0.83137
1.90623 1.48568 1.76104 1.31155 1.21543 1.06514 0.91704 0.97820
1.30167 1.13295 1.23714 1.05259 1.07584 0.74682 0.77355 0.78484
1.93544 1.63680 1.78675 1.60917 1.93530 1.33978 1.82504 1.85596
1.31148 1.11645 1.06921 1.17991 1.22471 0.97310 1.01487 0.94569
1.22134 1.02074 0.94651 0.97085 1.22136 1.02191 0.98449 0.92861
1.22348 1.03789 0.89418 0.99824 0.93563 0.89716 0.92171 0.88849
0.92291 0.90101 0.86127 0.93224 0.96830 0.92308 0.86118 0.85228
0.83112 0.83991 0.81859 0.89583 0.88554 0.90377 0.90520 0.90353
0.90253 0.88981 0.90581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.56 11.01 113.37 1.25 1.81 16
2 O -0.42 -12.63 9.53 -148.98 -1.42 -14.04 16
3 C 0.04 1.03 6.28 71.98 0.45 1.48 16
4 C 0.10 2.94 5.62 86.38 0.49 3.42 16
5 N -0.59 -24.41 2.42 -826.18 -2.00 -26.41 16
6 C 0.23 11.85 4.05 85.63 0.35 12.20 16
7 C -0.53 -32.17 9.94 25.60 0.25 -31.91 16
8 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16
9 C 0.01 0.76 5.47 84.65 0.46 1.23 16
10 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16
11 Si 0.94 46.04 27.47 68.60 1.88 47.93 16
12 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16
13 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16
14 H -0.24 -11.05 6.54 99.48 0.65 -10.40 16
15 C 0.50 19.92 7.67 87.65 0.67 20.59 16
16 O -0.58 -28.01 15.56 -3.04 -0.05 -28.06 16
17 C -0.14 -3.61 4.26 29.84 0.13 -3.48 16
18 C -0.60 -13.15 4.94 71.98 0.36 -12.80 16
19 S 2.43 47.93 4.32 -56.49 -0.24 47.68 16
20 O -0.97 -25.64 18.10 -127.37 -2.31 -27.94 16
21 O -0.96 -22.89 17.45 -127.37 -2.22 -25.11 16
22 C -0.56 -7.65 3.29 31.91 0.11 -7.54 16
23 C -0.12 -1.46 6.05 31.70 0.19 -1.27 16
24 C -0.12 -1.22 6.80 31.32 0.21 -1.01 16
25 C -0.12 -1.16 6.80 31.32 0.21 -0.95 16
26 C -0.12 -1.48 6.28 31.67 0.20 -1.28 16
27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16
28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
30 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16
31 H 0.06 1.30 7.30 -2.39 -0.02 1.28 16
32 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16
33 H 0.12 2.75 6.44 -2.39 -0.02 2.73 16
34 H 0.05 2.46 6.17 -2.39 -0.01 2.44 16
35 H 0.01 0.74 6.85 -2.39 -0.02 0.72 16
36 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16
37 H 0.12 2.84 7.40 -2.39 -0.02 2.82 16
38 H 0.13 2.67 7.26 -2.39 -0.02 2.65 16
39 H 0.15 2.94 8.02 -2.39 -0.02 2.92 16
40 H 0.14 3.12 8.10 -2.39 -0.02 3.10 16
41 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16
42 H 0.09 1.09 7.50 -2.39 -0.02 1.07 16
43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16
44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16
46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16
47 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16
48 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16
49 H 0.08 1.02 8.05 -2.39 -0.02 1.00 16
Total: -1.00 -89.07 405.12 0.14 -88.94
By element:
Atomic # 1 Polarization: 16.07 SS G_CDS: 0.86 Total: 16.93 kcal
Atomic # 6 Polarization: -24.85 SS G_CDS: 5.33 Total: -19.52 kcal
Atomic # 7 Polarization: -85.10 SS G_CDS: -1.70 Total: -86.80 kcal
Atomic # 8 Polarization: -89.16 SS G_CDS: -5.99 Total: -95.16 kcal
Atomic # 14 Polarization: 46.04 SS G_CDS: 1.88 Total: 47.93 kcal
Atomic # 16 Polarization: 47.93 SS G_CDS: -0.24 Total: 47.68 kcal
Total: -89.07 0.14 -88.94 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000103215620.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -99.516 kcal
(2) G-P(sol) polarization free energy of solvation -89.074 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.590 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.938 kcal
(6) G-S(sol) free energy of system = (1) + (5) -188.454 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds