Wall clock time and date at job start Wed Apr 1 2020 04:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99872 * 2 1 4 4 H 1.48498 * 109.47349 * 270.00181 * 3 2 1 5 5 H 1.48500 * 109.47375 * 30.00498 * 3 2 1 6 6 H 1.48504 * 109.47023 * 150.00293 * 3 2 1 7 7 C 1.37880 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99982 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99986 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47309 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.47173 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54381 * 68.37418 * 11 10 9 13 13 O 1.42103 * 110.54083 * 291.61993 * 11 10 9 14 14 N 1.65601 * 104.44884 * 179.97438 * 11 10 9 15 15 C 1.46507 * 119.99944 * 64.99946 * 14 11 10 16 16 C 1.53000 * 109.46914 * 164.99996 * 15 14 11 17 17 C 1.53008 * 109.46899 * 179.97438 * 16 15 14 18 18 N 1.46897 * 109.46633 * 180.02562 * 17 16 15 19 19 C 1.46848 * 111.00171 * 293.95015 * 18 17 16 20 20 C 1.53039 * 109.51997 * 174.16537 * 19 18 17 21 21 C 1.53119 * 109.28129 * 59.18522 * 20 19 18 22 22 C 1.53119 * 109.15731 * 302.34211 * 21 20 19 23 23 H 1.09002 * 109.50244 * 297.71261 * 22 21 20 24 24 C 1.50695 * 109.50187 * 177.63352 * 22 21 20 25 25 N 1.34780 * 120.00041 * 60.08113 * 24 22 21 26 26 O 1.21284 * 120.00296 * 240.07788 * 24 22 21 27 27 C 1.46855 * 110.99462 * 169.74510 * 18 17 16 28 28 H 0.96992 * 120.00511 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46545 * 59.99813 * 9 7 2 30 30 H 1.09000 * 109.46798 * 300.00213 * 9 7 2 31 31 H 1.09000 * 109.46932 * 59.99940 * 10 9 7 32 32 H 1.09002 * 109.47056 * 300.00308 * 10 9 7 33 33 H 0.96997 * 120.00008 * 244.99966 * 14 11 10 34 34 H 1.08996 * 109.47150 * 44.99534 * 15 14 11 35 35 H 1.09002 * 109.46872 * 285.00120 * 15 14 11 36 36 H 1.08997 * 109.47305 * 60.00276 * 16 15 14 37 37 H 1.08992 * 109.47353 * 299.99638 * 16 15 14 38 38 H 1.08997 * 109.46725 * 60.00156 * 17 16 15 39 39 H 1.09002 * 109.47072 * 300.00238 * 17 16 15 40 40 H 1.09001 * 109.45994 * 54.14761 * 19 18 17 41 41 H 1.09003 * 109.46354 * 294.18321 * 19 18 17 42 42 H 1.08998 * 109.50346 * 299.23617 * 20 19 18 43 43 H 1.09004 * 109.49572 * 179.12222 * 20 19 18 44 44 H 1.08999 * 109.52354 * 182.43479 * 21 20 19 45 45 H 1.09000 * 109.52348 * 62.24713 * 21 20 19 46 46 H 0.96998 * 119.99957 * 359.97438 * 25 24 22 47 47 H 0.96993 * 120.00210 * 179.97438 * 25 24 22 48 48 H 1.09003 * 109.46449 * 65.82226 * 27 18 17 49 49 H 1.08992 * 109.46444 * 305.85442 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 16 5.8355 -2.6365 -0.0022 12 8 6.3341 -2.1471 1.2351 13 8 6.3342 -2.1452 -1.2389 14 7 6.2488 -4.2401 -0.0028 15 6 5.9123 -5.0828 -1.1530 16 6 6.7091 -6.3870 -1.0801 17 6 6.3573 -7.2674 -2.2811 18 7 7.1218 -8.5197 -2.2107 19 6 8.5597 -8.2682 -2.3713 20 6 9.3344 -9.5691 -2.1482 21 6 8.8645 -10.6173 -3.1606 22 6 7.3555 -10.8252 -3.0050 23 1 7.1419 -11.2083 -2.0071 24 6 6.8747 -11.8127 -4.0367 25 7 7.3738 -13.0646 -4.0554 26 8 6.0385 -11.4811 -4.8503 27 6 6.6381 -9.4880 -3.2032 28 1 -0.4850 0.8399 0.0004 29 1 3.8751 -0.6804 0.8889 30 1 3.8745 -0.6800 -0.8911 31 1 3.6579 -3.1497 -0.8925 32 1 3.6585 -3.1510 0.8875 33 1 6.7135 -4.6215 0.7584 34 1 6.1609 -4.5562 -2.0744 35 1 4.8458 -5.3074 -1.1393 36 1 6.4605 -6.9137 -0.1588 37 1 7.7756 -6.1624 -1.0939 38 1 6.6056 -6.7409 -3.2026 39 1 5.2907 -7.4919 -2.2669 40 1 8.8818 -7.5241 -1.6427 41 1 8.7535 -7.8981 -3.3781 42 1 9.1520 -9.9324 -1.1369 43 1 10.4003 -9.3853 -2.2828 44 1 9.3827 -11.5586 -2.9775 45 1 9.0823 -10.2712 -4.1710 46 1 8.0427 -13.3297 -3.4050 47 1 7.0640 -13.7003 -4.7192 48 1 6.8409 -9.1122 -4.2061 49 1 5.5646 -9.6298 -3.0790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111337733.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:34 Heat of formation + Delta-G solvation = -130.733691 kcal Electronic energy + Delta-G solvation = -28119.254977 eV Core-core repulsion = 24014.350016 eV Total energy + Delta-G solvation = -4104.904961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.61452 -38.77129 -36.77390 -36.27660 -35.54214 -34.54822 -33.93581 -33.67663 -31.49278 -31.47030 -30.50365 -25.96485 -25.86314 -24.79585 -23.25006 -22.01814 -21.30148 -20.80748 -20.07470 -18.96933 -17.98120 -17.55937 -17.24144 -16.85080 -16.47883 -15.98964 -15.81882 -15.47913 -15.36597 -14.94901 -14.69026 -14.60633 -14.43394 -14.25286 -13.87877 -13.59462 -13.47952 -13.15250 -12.82363 -12.65527 -12.54117 -12.01037 -11.88555 -11.80602 -11.71341 -11.60700 -11.52336 -11.36937 -11.23855 -11.17653 -11.17176 -10.93343 -10.84485 -10.43824 -10.25151 -10.18290 -10.13655 -9.79472 -9.47863 -9.14281 -8.70862 -8.65317 -6.15516 -4.16727 0.69022 2.16709 2.89299 3.05588 3.27482 3.34802 3.39005 3.58133 4.10410 4.15020 4.23885 4.33124 4.36810 4.54879 4.64272 4.69951 4.75032 4.80165 4.84744 4.95524 5.03745 5.14440 5.16360 5.19656 5.32602 5.37376 5.38759 5.42627 5.46258 5.53241 5.56152 5.58761 5.63457 5.73313 5.80513 5.90342 6.08613 6.26850 6.30006 6.67008 6.69128 6.81343 6.83211 6.93990 7.05962 7.56024 7.77607 8.37642 8.85740 9.44146 10.96869 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.001805 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.450133 B =15510.224543 C =16596.507633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.870 3.130 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.583 4.583 11 S 2.593 3.407 12 O -0.968 6.968 13 O -0.968 6.968 14 N -1.125 6.125 15 C 0.114 3.886 16 C -0.121 4.121 17 C 0.055 3.945 18 N -0.538 5.538 19 C 0.046 3.954 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.105 4.105 23 H 0.108 0.892 24 C 0.522 3.478 25 N -0.856 5.856 26 O -0.541 6.541 27 C 0.075 3.925 28 H 0.266 0.734 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.413 0.587 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.035 0.965 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.401 0.599 47 H 0.401 0.599 48 H 0.043 0.957 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.431 -27.151 -4.721 34.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.696 3.304 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.558 4.558 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.716 4.716 11 S 2.690 3.310 12 O -0.958 6.958 13 O -0.958 6.958 14 N -0.883 5.883 15 C -0.013 4.013 16 C -0.160 4.160 17 C -0.073 4.073 18 N -0.262 5.262 19 C -0.082 4.082 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.127 4.127 23 H 0.126 0.874 24 C 0.307 3.693 25 N -0.420 5.420 26 O -0.417 6.417 27 C -0.054 4.054 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.246 0.754 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.230 0.770 47 H 0.232 0.768 48 H 0.062 0.938 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 20.203 -26.038 -4.879 33.316 hybrid contribution 0.207 0.136 -0.440 0.505 sum 20.410 -25.902 -5.318 33.403 Atomic orbital electron populations 1.69877 1.06206 1.27246 1.50023 1.24991 0.94826 0.99176 0.94158 0.86918 0.80692 0.83686 0.79102 1.19694 1.20780 1.18624 1.20857 0.87858 0.94902 1.52228 0.90411 1.19410 0.99891 0.87530 0.97862 1.30286 1.21283 1.09113 1.10901 1.05496 0.79012 0.72396 0.74110 1.93558 1.79200 1.77916 1.45169 1.93544 1.78419 1.78049 1.45740 1.55692 1.74995 1.30110 1.27519 1.21242 0.99446 0.91800 0.88817 1.21758 1.00650 0.94243 0.99370 1.22058 0.98821 0.89115 0.97326 1.61865 1.03305 1.11189 1.49888 1.22227 0.87816 0.97716 1.00451 1.21578 0.99246 0.94667 0.99790 1.21589 0.92957 0.99999 1.00442 1.21331 0.96910 0.95164 0.99285 0.87387 1.20646 0.80780 0.82938 0.84971 1.43885 1.46256 1.13781 1.38040 1.90776 1.32426 1.78201 1.40300 1.21804 0.99699 0.90133 0.93731 0.92392 0.94923 0.95369 0.85754 0.85491 0.75368 0.90300 0.91429 0.90193 0.91095 0.94062 0.89917 0.89915 0.94646 0.90642 0.90976 0.91262 0.91569 0.77029 0.76818 0.93845 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 10 C -0.58 -10.46 6.01 37.16 0.22 -10.24 16 11 S 2.59 42.62 5.46 -107.50 -0.59 42.03 16 12 O -0.97 -18.69 18.08 -57.54 -1.04 -19.73 16 13 O -0.97 -18.62 17.50 -57.54 -1.01 -19.63 16 14 N -1.13 -13.08 5.89 -10.61 -0.06 -13.14 16 15 C 0.11 1.14 6.13 -4.04 -0.02 1.11 16 16 C -0.12 -0.96 5.29 -26.73 -0.14 -1.10 16 17 C 0.06 0.44 4.96 -3.82 -0.02 0.42 16 18 N -0.54 -4.04 4.66 -234.66 -1.09 -5.13 16 19 C 0.05 0.30 5.29 -3.83 -0.02 0.28 16 20 C -0.12 -0.53 6.09 -26.65 -0.16 -0.69 16 21 C -0.11 -0.48 5.16 -26.61 -0.14 -0.61 16 22 C -0.11 -0.61 2.69 -91.69 -0.25 -0.86 16 23 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 24 C 0.52 3.80 7.43 -10.99 -0.08 3.72 16 25 N -0.86 -2.91 8.78 31.22 0.27 -2.64 16 26 O -0.54 -6.50 16.82 5.55 0.09 -6.41 16 27 C 0.07 0.60 4.04 -3.83 -0.02 0.58 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 30 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 31 H 0.12 2.01 8.14 -51.92 -0.42 1.58 16 32 H 0.13 2.08 8.14 -51.92 -0.42 1.66 16 33 H 0.41 3.97 8.62 -34.47 -0.30 3.67 16 34 H 0.08 0.84 7.70 -51.93 -0.40 0.44 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 38 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 39 H 0.08 0.64 7.98 -51.93 -0.41 0.23 16 40 H 0.08 0.53 6.22 -51.93 -0.32 0.20 16 41 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.15 7.65 -51.93 -0.40 -0.25 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.40 0.19 8.30 -40.82 -0.34 -0.15 16 47 H 0.40 1.14 8.93 -40.82 -0.36 0.78 16 48 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 49 H 0.08 0.75 7.99 -51.93 -0.41 0.34 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -38.12 402.00 -10.71 -48.83 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.28 Total: -0.20 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -1.17 Total: -20.58 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.11 Total: -47.27 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -1.95 Total: -45.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Atomic # 16 Polarization: 42.62 SS G_CDS: -0.59 Total: 42.03 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.12 -10.71 -48.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111337733.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.907 kcal (2) G-P(sol) polarization free energy of solvation -38.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds