Wall clock time and date at job start Wed Apr 1 2020 04:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99872 * 2 1 4 4 H 1.48498 * 109.47349 * 270.00181 * 3 2 1 5 5 H 1.48500 * 109.47375 * 30.00498 * 3 2 1 6 6 H 1.48504 * 109.47023 * 150.00293 * 3 2 1 7 7 C 1.37880 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99982 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99986 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47309 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.47173 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54381 * 68.37418 * 11 10 9 13 13 O 1.42103 * 110.54083 * 291.61993 * 11 10 9 14 14 N 1.65601 * 104.44884 * 179.97438 * 11 10 9 15 15 C 1.46507 * 119.99944 * 64.99946 * 14 11 10 16 16 C 1.53000 * 109.46914 * 164.99996 * 15 14 11 17 17 C 1.53008 * 109.46899 * 179.97438 * 16 15 14 18 18 N 1.46897 * 109.46633 * 180.02562 * 17 16 15 19 19 C 1.46848 * 111.00171 * 293.95015 * 18 17 16 20 20 C 1.53039 * 109.51997 * 174.16537 * 19 18 17 21 21 C 1.53119 * 109.28129 * 59.18522 * 20 19 18 22 22 C 1.53119 * 109.15731 * 302.34211 * 21 20 19 23 23 H 1.09002 * 109.50244 * 297.71261 * 22 21 20 24 24 C 1.50695 * 109.50187 * 177.63352 * 22 21 20 25 25 N 1.34780 * 120.00041 * 60.08113 * 24 22 21 26 26 O 1.21284 * 120.00296 * 240.07788 * 24 22 21 27 27 C 1.46855 * 110.99462 * 169.74510 * 18 17 16 28 28 H 0.96992 * 120.00511 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46545 * 59.99813 * 9 7 2 30 30 H 1.09000 * 109.46798 * 300.00213 * 9 7 2 31 31 H 1.09000 * 109.46932 * 59.99940 * 10 9 7 32 32 H 1.09002 * 109.47056 * 300.00308 * 10 9 7 33 33 H 0.96997 * 120.00008 * 244.99966 * 14 11 10 34 34 H 1.08996 * 109.47150 * 44.99534 * 15 14 11 35 35 H 1.09002 * 109.46872 * 285.00120 * 15 14 11 36 36 H 1.08997 * 109.47305 * 60.00276 * 16 15 14 37 37 H 1.08992 * 109.47353 * 299.99638 * 16 15 14 38 38 H 1.08997 * 109.46725 * 60.00156 * 17 16 15 39 39 H 1.09002 * 109.47072 * 300.00238 * 17 16 15 40 40 H 1.09001 * 109.45994 * 54.14761 * 19 18 17 41 41 H 1.09003 * 109.46354 * 294.18321 * 19 18 17 42 42 H 1.08998 * 109.50346 * 299.23617 * 20 19 18 43 43 H 1.09004 * 109.49572 * 179.12222 * 20 19 18 44 44 H 1.08999 * 109.52354 * 182.43479 * 21 20 19 45 45 H 1.09000 * 109.52348 * 62.24713 * 21 20 19 46 46 H 0.96998 * 119.99957 * 359.97438 * 25 24 22 47 47 H 0.96993 * 120.00210 * 179.97438 * 25 24 22 48 48 H 1.09003 * 109.46449 * 65.82226 * 27 18 17 49 49 H 1.08992 * 109.46444 * 305.85442 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 16 5.8355 -2.6365 -0.0022 12 8 6.3341 -2.1471 1.2351 13 8 6.3342 -2.1452 -1.2389 14 7 6.2488 -4.2401 -0.0028 15 6 5.9123 -5.0828 -1.1530 16 6 6.7091 -6.3870 -1.0801 17 6 6.3573 -7.2674 -2.2811 18 7 7.1218 -8.5197 -2.2107 19 6 8.5597 -8.2682 -2.3713 20 6 9.3344 -9.5691 -2.1482 21 6 8.8645 -10.6173 -3.1606 22 6 7.3555 -10.8252 -3.0050 23 1 7.1419 -11.2083 -2.0071 24 6 6.8747 -11.8127 -4.0367 25 7 7.3738 -13.0646 -4.0554 26 8 6.0385 -11.4811 -4.8503 27 6 6.6381 -9.4880 -3.2032 28 1 -0.4850 0.8399 0.0004 29 1 3.8751 -0.6804 0.8889 30 1 3.8745 -0.6800 -0.8911 31 1 3.6579 -3.1497 -0.8925 32 1 3.6585 -3.1510 0.8875 33 1 6.7135 -4.6215 0.7584 34 1 6.1609 -4.5562 -2.0744 35 1 4.8458 -5.3074 -1.1393 36 1 6.4605 -6.9137 -0.1588 37 1 7.7756 -6.1624 -1.0939 38 1 6.6056 -6.7409 -3.2026 39 1 5.2907 -7.4919 -2.2669 40 1 8.8818 -7.5241 -1.6427 41 1 8.7535 -7.8981 -3.3781 42 1 9.1520 -9.9324 -1.1369 43 1 10.4003 -9.3853 -2.2828 44 1 9.3827 -11.5586 -2.9775 45 1 9.0823 -10.2712 -4.1710 46 1 8.0427 -13.3297 -3.4050 47 1 7.0640 -13.7003 -4.7192 48 1 6.8409 -9.1122 -4.2061 49 1 5.5646 -9.6298 -3.0790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111337733.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:33 Heat of formation + Delta-G solvation = -164.230015 kcal Electronic energy + Delta-G solvation = -28120.707487 eV Core-core repulsion = 24014.350016 eV Total energy + Delta-G solvation = -4106.357471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.16279 -39.36635 -38.16412 -37.16928 -36.94949 -35.87626 -35.16264 -34.21221 -33.45563 -31.99084 -31.21162 -27.86580 -26.51902 -25.34974 -23.85003 -23.20400 -22.56695 -21.42238 -20.55939 -20.25075 -19.35330 -18.44679 -18.32331 -17.77548 -17.43003 -17.05344 -16.67884 -16.49073 -16.34569 -16.06916 -15.77409 -15.43494 -15.27845 -15.12528 -14.96525 -14.80734 -14.41703 -14.06593 -13.80755 -13.70508 -13.60332 -13.27274 -13.18139 -13.10987 -13.04871 -12.91920 -12.53957 -12.42236 -12.32074 -12.20307 -12.02902 -11.92923 -11.70943 -11.64092 -11.55240 -11.34598 -11.23406 -10.83769 -10.83342 -10.64610 -10.31195 -9.32948 -8.35836 -6.41430 -0.66545 1.32595 1.34277 1.44521 1.62081 1.84245 2.30153 2.45624 2.79712 2.98213 3.04479 3.30326 3.63985 3.79239 3.88336 3.92275 4.04136 4.07124 4.12013 4.15021 4.28000 4.29484 4.41951 4.53329 4.58906 4.59615 4.66254 4.72139 4.75021 4.78218 4.89031 4.97143 5.00060 5.10128 5.11776 5.14175 5.18202 5.24644 5.36133 5.43726 5.48794 5.89979 6.05296 6.12782 6.17669 6.18912 6.46317 6.64896 7.22892 7.35072 8.79706 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.001805 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.450133 B =15510.224543 C =16596.507633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.012 3.988 3 Si 0.926 3.074 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.527 4.527 8 H 0.049 0.951 9 C -0.019 4.019 10 C -0.590 4.590 11 S 2.628 3.372 12 O -0.994 6.994 13 O -0.993 6.993 14 N -1.106 6.106 15 C 0.104 3.896 16 C -0.109 4.109 17 C 0.053 3.947 18 N -0.535 5.535 19 C 0.040 3.960 20 C -0.110 4.110 21 C -0.107 4.107 22 C -0.098 4.098 23 H 0.124 0.876 24 C 0.519 3.481 25 N -0.835 5.835 26 O -0.598 6.598 27 C 0.075 3.925 28 H 0.269 0.731 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.426 0.574 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.053 0.947 46 H 0.419 0.581 47 H 0.406 0.594 48 H 0.021 0.979 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.132 -28.538 -3.921 36.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.187 4.187 3 Si 0.749 3.251 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.172 1.172 7 C -0.566 4.566 8 H 0.067 0.933 9 C -0.058 4.058 10 C -0.721 4.721 11 S 2.723 3.277 12 O -0.984 6.984 13 O -0.983 6.983 14 N -0.868 5.868 15 C -0.023 4.023 16 C -0.149 4.149 17 C -0.076 4.076 18 N -0.259 5.259 19 C -0.088 4.088 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.120 4.120 23 H 0.142 0.858 24 C 0.304 3.696 25 N -0.398 5.398 26 O -0.478 6.478 27 C -0.053 4.053 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.263 0.737 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.043 0.957 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.117 0.883 45 H 0.072 0.928 46 H 0.250 0.750 47 H 0.238 0.762 48 H 0.040 0.960 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.942 -27.467 -4.044 36.016 hybrid contribution -0.634 0.404 -0.709 1.033 sum 22.309 -27.063 -4.753 35.393 Atomic orbital electron populations 1.70007 1.07904 1.28358 1.51752 1.25894 0.95652 1.03083 0.94041 0.86006 0.79928 0.79349 0.79827 1.18605 1.19979 1.17218 1.21202 0.90383 0.93835 1.51205 0.93270 1.19380 0.97112 0.91393 0.97887 1.30299 1.23467 1.05887 1.12495 1.04231 0.77525 0.73158 0.72777 1.93518 1.79244 1.79372 1.46300 1.93514 1.78406 1.79435 1.46939 1.55214 1.74427 1.28572 1.28634 1.21492 1.00782 0.92284 0.87715 1.21651 1.00561 0.93021 0.99626 1.22061 0.98997 0.89454 0.97089 1.61919 1.03926 1.10738 1.49323 1.22347 0.87295 0.99164 0.99965 1.21575 0.99650 0.93477 1.00110 1.21600 0.91759 1.01409 0.99764 1.21293 0.97719 0.93495 0.99443 0.85789 1.20931 0.80112 0.84021 0.84513 1.43723 1.45586 1.12507 1.38013 1.90755 1.35122 1.79372 1.42577 1.21737 0.99257 0.91580 0.92734 0.92167 0.94911 0.95041 0.84255 0.84113 0.73689 0.90945 0.90100 0.89221 0.90561 0.94812 0.90037 0.89513 0.95744 0.89926 0.89594 0.88308 0.92810 0.74963 0.76249 0.96039 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.12 13.96 21.45 0.30 -57.83 16 2 C 0.01 0.68 5.47 84.66 0.46 1.15 16 3 Si 0.93 44.08 27.47 68.60 1.88 45.96 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 7 C -0.53 -29.85 9.66 25.60 0.25 -29.60 16 8 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 9 C -0.02 -0.87 4.05 29.85 0.12 -0.75 16 10 C -0.59 -20.51 6.01 71.98 0.43 -20.08 16 11 S 2.63 81.95 5.46 -56.49 -0.31 81.64 16 12 O -0.99 -36.65 18.08 -127.65 -2.31 -38.96 16 13 O -0.99 -36.78 17.50 -127.65 -2.23 -39.01 16 14 N -1.11 -23.15 5.89 -187.48 -1.10 -24.25 16 15 C 0.10 1.87 6.13 86.38 0.53 2.40 16 16 C -0.11 -1.52 5.29 30.60 0.16 -1.35 16 17 C 0.05 0.80 4.96 86.31 0.43 1.22 16 18 N -0.53 -7.52 4.66 -896.32 -4.17 -11.69 16 19 C 0.04 0.46 5.29 86.33 0.46 0.92 16 20 C -0.11 -0.73 6.09 30.65 0.19 -0.54 16 21 C -0.11 -0.67 5.16 30.67 0.16 -0.51 16 22 C -0.10 -1.01 2.69 -11.49 -0.03 -1.04 16 23 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 24 C 0.52 7.22 7.43 87.66 0.65 7.87 16 25 N -0.83 -4.17 8.78 -173.53 -1.52 -5.69 16 26 O -0.60 -14.87 16.82 -3.04 -0.05 -14.93 16 27 C 0.08 1.21 4.04 86.32 0.35 1.56 16 28 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.03 1.51 7.20 -2.39 -0.02 1.50 16 30 H 0.03 1.43 7.57 -2.39 -0.02 1.42 16 31 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 32 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 33 H 0.43 6.98 8.62 -96.75 -0.83 6.15 16 34 H 0.07 1.44 7.70 -2.39 -0.02 1.43 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.00 6.44 -2.39 -0.02 0.99 16 38 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 39 H 0.08 1.23 7.98 -2.39 -0.02 1.22 16 40 H 0.09 0.93 6.22 -2.39 -0.01 0.91 16 41 H 0.02 0.33 8.14 -2.39 -0.02 0.32 16 42 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 44 H 0.10 0.06 7.65 -2.39 -0.02 0.04 16 45 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.42 -0.82 8.30 -92.71 -0.77 -1.59 16 47 H 0.41 1.70 8.93 -92.71 -0.83 0.88 16 48 H 0.02 0.43 8.08 -2.39 -0.02 0.41 16 49 H 0.07 1.30 7.99 -2.39 -0.02 1.28 16 Total: -1.00 -83.91 402.00 -6.88 -90.79 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -1.51 Total: 12.72 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 4.15 Total: -38.75 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -6.50 Total: -99.46 kcal Atomic # 8 Polarization: -88.30 SS G_CDS: -4.59 Total: -92.89 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Atomic # 16 Polarization: 81.95 SS G_CDS: -0.31 Total: 81.64 kcal Total: -83.91 -6.88 -90.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111337733.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.441 kcal (2) G-P(sol) polarization free energy of solvation -83.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds