Wall clock time and date at job start Wed Apr 1 2020 04:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47226 * 2 1 4 4 C 1.53005 * 109.47003 * 239.99826 * 2 1 3 5 5 C 1.52997 * 109.47048 * 120.00009 * 2 1 3 6 6 H 1.08994 * 109.47586 * 298.48839 * 5 2 1 7 7 N 1.46506 * 109.47132 * 58.49184 * 5 2 1 8 8 S 1.65607 * 119.99680 * 239.47156 * 7 5 2 9 9 C 1.81403 * 104.44823 * 62.93462 * 8 7 5 10 10 O 1.42101 * 104.27530 * 306.86382 * 8 7 5 11 11 O 1.42095 * 104.27304 * 179.00757 * 8 7 5 12 12 C 1.50701 * 109.47239 * 178.48696 * 5 2 1 13 13 O 1.21285 * 119.99948 * 269.16869 * 12 5 2 14 14 N 1.34771 * 119.99922 * 89.16538 * 12 5 2 15 15 C 1.46967 * 120.59729 * 5.52334 * 14 12 5 16 16 C 1.53814 * 108.39464 * 124.75522 * 15 14 12 17 17 N 1.46968 * 108.58033 * 49.64678 * 16 15 14 18 18 C 1.36931 * 120.59345 * 124.66458 * 17 16 15 19 19 H 1.08003 * 119.99942 * 211.54490 * 18 17 16 20 20 C 1.38807 * 120.00615 * 31.54379 * 18 17 16 21 21 N 1.31626 * 119.99608 * 11.55749 * 20 18 17 22 22 Si 1.86803 * 120.00551 * 191.55561 * 20 18 17 23 23 H 1.48502 * 109.46876 * 90.00031 * 22 20 18 24 24 H 1.48496 * 109.47027 * 210.00040 * 22 20 18 25 25 H 1.48501 * 109.46834 * 330.00440 * 22 20 18 26 26 C 1.46962 * 118.80873 * 304.64315 * 17 16 15 27 27 C 1.46968 * 120.59637 * 185.80655 * 14 12 5 28 28 H 1.08999 * 109.46926 * 302.50812 * 1 2 3 29 29 H 1.09002 * 109.46754 * 62.50283 * 1 2 3 30 30 H 1.08996 * 109.47104 * 182.50300 * 1 2 3 31 31 H 1.09000 * 109.47219 * 183.58937 * 3 2 1 32 32 H 1.08997 * 109.47061 * 303.58622 * 3 2 1 33 33 H 1.09001 * 109.47363 * 63.58970 * 3 2 1 34 34 H 1.09001 * 109.47470 * 300.00096 * 4 2 1 35 35 H 1.09000 * 109.46975 * 60.00480 * 4 2 1 36 36 H 1.09005 * 109.47200 * 179.97438 * 4 2 1 37 37 H 0.96994 * 120.00544 * 59.46694 * 7 5 2 38 38 H 1.08994 * 109.47062 * 307.87423 * 9 8 7 39 39 H 1.09004 * 109.46767 * 187.87220 * 9 8 7 40 40 H 1.08996 * 109.46678 * 67.87639 * 9 8 7 41 41 H 1.08996 * 109.61367 * 244.54236 * 15 14 12 42 42 H 1.09000 * 109.60593 * 5.05807 * 15 14 12 43 43 H 1.08999 * 109.74735 * 289.85281 * 16 15 14 44 44 H 1.09009 * 109.52993 * 169.30603 * 16 15 14 45 45 H 0.96998 * 120.00139 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.61151 * 295.48105 * 26 17 16 47 47 H 1.08994 * 109.61004 * 174.97155 * 26 17 16 48 48 H 1.09000 * 109.60818 * 354.94745 * 27 14 12 49 49 H 1.08999 * 109.61075 * 115.45621 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.6990 -0.1921 2.1390 7 7 1.5221 -2.0916 1.2675 8 16 0.5851 -2.6058 2.5325 9 6 -0.8894 -1.5515 2.4613 10 8 1.3581 -2.3048 3.6862 11 8 0.2551 -3.9476 2.2013 12 6 3.5465 -0.7538 1.2307 13 8 4.1266 -1.6883 0.7195 14 7 4.2492 0.2554 1.7820 15 6 3.5648 1.3331 2.5101 16 6 4.1709 1.4268 3.9207 17 7 5.6348 1.4728 3.7993 18 6 6.3487 2.4983 4.3594 19 1 7.2645 2.8349 3.8962 20 6 5.8955 3.1053 5.5226 21 7 4.9160 2.5589 6.2114 22 14 6.6756 4.6976 6.1103 23 1 5.9499 5.8514 5.5208 24 1 6.5990 4.7691 7.5916 25 1 8.0980 4.7382 5.6856 26 6 6.3188 0.3982 3.0662 27 6 5.7131 0.3014 1.6605 28 1 -0.3633 0.5523 0.8666 29 1 -0.3633 0.4745 -0.9116 30 1 -0.3633 -1.0266 0.0449 31 1 3.1281 1.4431 -0.0643 32 1 1.6252 1.9745 -0.8561 33 1 1.7302 1.9374 0.9204 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.7281 -2.6977 0.5388 38 1 -0.5865 -0.5049 2.4299 39 1 -1.5036 -1.7257 3.3448 40 1 -1.4640 -1.7904 1.5665 41 1 3.7067 2.2773 1.9845 42 1 2.5008 1.1077 2.5818 43 1 3.8796 0.5543 4.5055 44 1 3.8158 2.3337 4.4104 45 1 4.5990 2.9832 7.0240 46 1 6.1803 -0.5476 3.5901 47 1 7.3821 0.6257 2.9916 48 1 6.0682 -0.6054 1.1709 49 1 6.0045 1.1739 1.0758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126441874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:55 Heat of formation + Delta-G solvation = -70.563422 kcal Electronic energy + Delta-G solvation = -31821.509585 eV Core-core repulsion = 27719.213802 eV Total energy + Delta-G solvation = -4102.295783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.55793 -37.69695 -37.16171 -36.58891 -36.02188 -33.97180 -33.41912 -31.46187 -30.24543 -30.01006 -27.84494 -27.37824 -27.11649 -26.12266 -23.59100 -22.80239 -20.88025 -19.75898 -19.49476 -18.67957 -17.96041 -17.11110 -16.60047 -16.38978 -15.99042 -15.68338 -15.46363 -15.01771 -14.69066 -14.29476 -13.91052 -13.78777 -13.66566 -13.45389 -13.40014 -13.29480 -13.18179 -12.94108 -12.56154 -12.32228 -12.24203 -12.18010 -12.09095 -11.95846 -11.76318 -11.67026 -11.45261 -11.28228 -11.18762 -10.98629 -10.89848 -10.83300 -10.68286 -10.49123 -10.27960 -10.15492 -9.93733 -9.81914 -9.08243 -8.58434 -8.25474 -6.65475 -5.84255 -3.34282 0.09559 2.46771 2.90945 3.32872 3.37343 3.40804 3.42206 3.65149 4.04317 4.37566 4.43138 4.46821 4.47070 4.57497 4.72601 4.81085 4.92531 5.17144 5.29175 5.32857 5.33316 5.35533 5.40343 5.57231 5.60267 5.69025 5.73874 5.80270 5.83288 5.86413 5.93079 5.96681 6.07541 6.15560 6.19567 6.22230 6.34801 6.43894 6.81714 6.86210 6.94015 7.24152 7.50954 7.71930 7.87154 8.39078 8.49525 9.13693 9.74346 10.33439 11.22958 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.003709 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.155443 B = 7546.784668 C = 8087.149591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 C -0.154 4.154 4 C -0.142 4.142 5 C 0.141 3.859 6 H 0.109 0.891 7 N -1.096 6.096 8 S 2.605 3.395 9 C -0.679 4.679 10 O -0.943 6.943 11 O -0.959 6.959 12 C 0.512 3.488 13 O -0.546 6.546 14 N -0.591 5.591 15 C 0.076 3.924 16 C 0.155 3.845 17 N -0.590 5.590 18 C -0.256 4.256 19 H 0.066 0.934 20 C 0.006 3.994 21 N -0.903 5.903 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.131 3.869 27 C 0.096 3.904 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.423 0.577 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.029 0.971 44 H 0.101 0.899 45 H 0.256 0.744 46 H 0.025 0.975 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.535 -3.337 -13.497 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.072 4.072 3 C -0.212 4.212 4 C -0.200 4.200 5 C 0.029 3.971 6 H 0.127 0.873 7 N -0.856 5.856 8 S 2.696 3.304 9 C -0.829 4.829 10 O -0.932 6.932 11 O -0.949 6.949 12 C 0.298 3.702 13 O -0.424 6.424 14 N -0.323 5.323 15 C -0.048 4.048 16 C 0.028 3.972 17 N -0.313 5.313 18 C -0.385 4.385 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.547 5.547 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.004 3.996 27 C -0.028 4.028 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.260 0.740 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.119 0.881 45 H 0.066 0.934 46 H 0.043 0.957 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.102 -4.342 -12.807 18.829 hybrid contribution -0.004 1.180 -0.064 1.182 sum -13.106 -3.162 -12.871 18.639 Atomic orbital electron populations 1.22151 0.93891 1.01983 1.02721 1.20807 0.96104 0.95921 0.94395 1.22161 1.02378 0.93980 1.02661 1.21880 1.02260 0.99999 0.95814 1.20877 0.92915 0.82862 1.00401 0.87308 1.55398 1.66618 1.20671 1.42863 1.05085 0.76408 0.74989 0.73892 1.30784 1.22492 1.17881 1.11743 1.93705 1.66097 1.85213 1.48223 1.93613 1.85165 1.32540 1.83591 1.20428 0.89094 0.82286 0.78426 1.90626 1.71214 1.33716 1.46887 1.48060 1.07786 1.23915 1.52531 1.23015 0.95433 0.89236 0.97139 1.21330 0.83850 1.02517 0.89497 1.43919 1.01298 1.23545 1.62503 1.19194 1.07068 1.08675 1.03604 0.91608 1.25189 0.98956 0.99750 0.95416 1.69967 1.29631 1.38686 1.16399 0.86242 0.79107 0.83327 0.77754 1.21379 1.21678 1.20395 1.21309 0.96054 0.92233 0.90051 1.22214 0.79043 1.01534 1.00008 0.92045 0.91545 0.92261 0.91425 0.91881 0.91553 0.92286 0.92423 0.91603 0.73991 0.84970 0.85109 0.85008 0.91313 0.91389 0.95302 0.88097 0.93427 0.95709 0.91592 0.90008 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 7.08 37.16 0.26 -0.72 16 2 C -0.07 -0.65 0.62 -154.51 -0.10 -0.75 16 3 C -0.15 -1.46 6.79 37.16 0.25 -1.21 16 4 C -0.14 -1.38 7.89 37.16 0.29 -1.09 16 5 C 0.14 1.72 1.39 -69.08 -0.10 1.63 16 6 H 0.11 1.25 5.12 -51.93 -0.27 0.98 16 7 N -1.10 -12.53 3.94 -5.88 -0.02 -12.56 16 8 S 2.60 29.94 5.95 -107.50 -0.64 29.30 16 9 C -0.68 -4.38 9.20 101.05 0.93 -3.45 16 10 O -0.94 -15.57 17.75 -57.54 -1.02 -16.59 16 11 O -0.96 -13.53 18.08 -57.54 -1.04 -14.57 16 12 C 0.51 8.40 5.22 -10.99 -0.06 8.34 16 13 O -0.55 -10.27 15.06 5.55 0.08 -10.18 16 14 N -0.59 -10.17 2.33 -172.21 -0.40 -10.57 16 15 C 0.08 1.28 4.37 -3.36 -0.01 1.26 16 16 C 0.15 3.48 5.48 -3.36 -0.02 3.46 16 17 N -0.59 -14.25 2.96 -171.77 -0.51 -14.76 16 18 C -0.26 -6.72 9.57 -15.06 -0.14 -6.86 16 19 H 0.07 1.70 7.86 -52.48 -0.41 1.28 16 20 C 0.01 0.16 5.03 -17.43 -0.09 0.07 16 21 N -0.90 -25.29 11.08 55.49 0.61 -24.68 16 22 Si 0.91 20.89 29.57 -169.99 -5.03 15.86 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.13 2.75 6.67 -3.60 -0.02 2.73 16 27 C 0.10 1.72 6.60 -3.60 -0.02 1.70 16 28 H 0.06 0.33 6.66 -51.93 -0.35 -0.01 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.33 5.76 -51.93 -0.30 0.03 16 31 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.59 6.50 -51.93 -0.34 0.26 16 34 H 0.06 0.53 6.89 -51.93 -0.36 0.18 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.80 6.64 -51.93 -0.35 0.46 16 37 H 0.42 4.58 7.49 -34.47 -0.26 4.32 16 38 H 0.13 0.71 5.90 -51.93 -0.31 0.40 16 39 H 0.13 0.68 8.14 -51.92 -0.42 0.25 16 40 H 0.13 0.57 7.22 -51.93 -0.37 0.20 16 41 H 0.07 1.10 7.66 -51.93 -0.40 0.70 16 42 H 0.07 0.94 4.35 -51.93 -0.23 0.71 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 2.47 6.06 -51.92 -0.31 2.16 16 45 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 48 H 0.08 1.45 6.99 -51.93 -0.36 1.08 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -35.76 374.63 -8.58 -44.34 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.44 Total: 3.64 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 1.18 Total: 5.12 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.32 Total: -62.56 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.98 Total: -41.35 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Atomic # 16 Polarization: 29.94 SS G_CDS: -0.64 Total: 29.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.76 -8.58 -44.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126441874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.224 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds