Wall clock time and date at job start Wed Apr 1 2020 04:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47226 * 2 1 4 4 C 1.53005 * 109.47003 * 239.99826 * 2 1 3 5 5 C 1.52997 * 109.47048 * 120.00009 * 2 1 3 6 6 H 1.08994 * 109.47586 * 298.48839 * 5 2 1 7 7 N 1.46506 * 109.47132 * 58.49184 * 5 2 1 8 8 S 1.65607 * 119.99680 * 239.47156 * 7 5 2 9 9 C 1.81403 * 104.44823 * 62.93462 * 8 7 5 10 10 O 1.42101 * 104.27530 * 306.86382 * 8 7 5 11 11 O 1.42095 * 104.27304 * 179.00757 * 8 7 5 12 12 C 1.50701 * 109.47239 * 178.48696 * 5 2 1 13 13 O 1.21285 * 119.99948 * 269.16869 * 12 5 2 14 14 N 1.34771 * 119.99922 * 89.16538 * 12 5 2 15 15 C 1.46967 * 120.59729 * 5.52334 * 14 12 5 16 16 C 1.53814 * 108.39464 * 124.75522 * 15 14 12 17 17 N 1.46968 * 108.58033 * 49.64678 * 16 15 14 18 18 C 1.36931 * 120.59345 * 124.66458 * 17 16 15 19 19 H 1.08003 * 119.99942 * 211.54490 * 18 17 16 20 20 C 1.38807 * 120.00615 * 31.54379 * 18 17 16 21 21 N 1.31626 * 119.99608 * 11.55749 * 20 18 17 22 22 Si 1.86803 * 120.00551 * 191.55561 * 20 18 17 23 23 H 1.48502 * 109.46876 * 90.00031 * 22 20 18 24 24 H 1.48496 * 109.47027 * 210.00040 * 22 20 18 25 25 H 1.48501 * 109.46834 * 330.00440 * 22 20 18 26 26 C 1.46962 * 118.80873 * 304.64315 * 17 16 15 27 27 C 1.46968 * 120.59637 * 185.80655 * 14 12 5 28 28 H 1.08999 * 109.46926 * 302.50812 * 1 2 3 29 29 H 1.09002 * 109.46754 * 62.50283 * 1 2 3 30 30 H 1.08996 * 109.47104 * 182.50300 * 1 2 3 31 31 H 1.09000 * 109.47219 * 183.58937 * 3 2 1 32 32 H 1.08997 * 109.47061 * 303.58622 * 3 2 1 33 33 H 1.09001 * 109.47363 * 63.58970 * 3 2 1 34 34 H 1.09001 * 109.47470 * 300.00096 * 4 2 1 35 35 H 1.09000 * 109.46975 * 60.00480 * 4 2 1 36 36 H 1.09005 * 109.47200 * 179.97438 * 4 2 1 37 37 H 0.96994 * 120.00544 * 59.46694 * 7 5 2 38 38 H 1.08994 * 109.47062 * 307.87423 * 9 8 7 39 39 H 1.09004 * 109.46767 * 187.87220 * 9 8 7 40 40 H 1.08996 * 109.46678 * 67.87639 * 9 8 7 41 41 H 1.08996 * 109.61367 * 244.54236 * 15 14 12 42 42 H 1.09000 * 109.60593 * 5.05807 * 15 14 12 43 43 H 1.08999 * 109.74735 * 289.85281 * 16 15 14 44 44 H 1.09009 * 109.52993 * 169.30603 * 16 15 14 45 45 H 0.96998 * 120.00139 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.61151 * 295.48105 * 26 17 16 47 47 H 1.08994 * 109.61004 * 174.97155 * 26 17 16 48 48 H 1.09000 * 109.60818 * 354.94745 * 27 14 12 49 49 H 1.08999 * 109.61075 * 115.45621 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.6990 -0.1921 2.1390 7 7 1.5221 -2.0916 1.2675 8 16 0.5851 -2.6058 2.5325 9 6 -0.8894 -1.5515 2.4613 10 8 1.3581 -2.3048 3.6862 11 8 0.2551 -3.9476 2.2013 12 6 3.5465 -0.7538 1.2307 13 8 4.1266 -1.6883 0.7195 14 7 4.2492 0.2554 1.7820 15 6 3.5648 1.3331 2.5101 16 6 4.1709 1.4268 3.9207 17 7 5.6348 1.4728 3.7993 18 6 6.3487 2.4983 4.3594 19 1 7.2645 2.8349 3.8962 20 6 5.8955 3.1053 5.5226 21 7 4.9160 2.5589 6.2114 22 14 6.6756 4.6976 6.1103 23 1 5.9499 5.8514 5.5208 24 1 6.5990 4.7691 7.5916 25 1 8.0980 4.7382 5.6856 26 6 6.3188 0.3982 3.0662 27 6 5.7131 0.3014 1.6605 28 1 -0.3633 0.5523 0.8666 29 1 -0.3633 0.4745 -0.9116 30 1 -0.3633 -1.0266 0.0449 31 1 3.1281 1.4431 -0.0643 32 1 1.6252 1.9745 -0.8561 33 1 1.7302 1.9374 0.9204 34 1 1.6766 -1.7490 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.7281 -2.6977 0.5388 38 1 -0.5865 -0.5049 2.4299 39 1 -1.5036 -1.7257 3.3448 40 1 -1.4640 -1.7904 1.5665 41 1 3.7067 2.2773 1.9845 42 1 2.5008 1.1077 2.5818 43 1 3.8796 0.5543 4.5055 44 1 3.8158 2.3337 4.4104 45 1 4.5990 2.9832 7.0240 46 1 6.1803 -0.5476 3.5901 47 1 7.3821 0.6257 2.9916 48 1 6.0682 -0.6054 1.1709 49 1 6.0045 1.1739 1.0758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126441874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:54 Heat of formation + Delta-G solvation = -98.587969 kcal Electronic energy + Delta-G solvation = -31822.724821 eV Core-core repulsion = 27719.213802 eV Total energy + Delta-G solvation = -4103.511018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.74101 -38.95929 -38.20366 -37.94948 -37.05968 -35.64671 -34.31474 -33.26000 -31.90850 -30.62002 -29.19752 -28.17280 -27.87304 -27.39430 -25.31964 -24.38736 -22.38985 -20.79444 -20.56489 -19.82329 -19.20017 -18.40643 -17.72735 -17.70212 -17.13986 -16.84965 -16.73507 -16.47163 -15.93895 -15.46845 -15.25557 -15.15091 -15.00623 -14.84777 -14.63566 -14.07796 -13.98822 -13.91441 -13.74058 -13.42270 -13.24603 -13.20993 -13.13104 -13.11206 -12.85539 -12.78628 -12.68266 -12.46361 -12.39300 -12.33061 -12.20265 -12.02617 -11.97114 -11.87671 -11.67101 -11.65685 -11.57394 -11.06797 -10.59016 -10.23040 -9.77871 -8.59713 -7.85558 -5.40281 -0.74783 1.46613 1.50781 1.51746 1.60627 1.73581 2.08169 2.52328 2.83033 3.23247 3.28754 3.37946 3.49267 3.64241 3.70430 3.92550 4.09683 4.14822 4.18881 4.24703 4.27822 4.37449 4.47623 4.55325 4.60068 4.65503 4.77269 4.81173 4.84542 4.87283 4.94107 4.98079 5.07340 5.10477 5.12885 5.18468 5.24519 5.38666 5.48909 5.53307 5.57548 5.63431 5.67905 5.96704 6.39422 6.50444 7.13356 7.16321 7.79040 8.35108 9.19094 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.003709 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.155443 B = 7546.784668 C = 8087.149591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.062 4.062 3 C -0.157 4.157 4 C -0.141 4.141 5 C 0.143 3.857 6 H 0.118 0.882 7 N -1.096 6.096 8 S 2.597 3.403 9 C -0.647 4.647 10 O -1.007 7.007 11 O -0.994 6.994 12 C 0.505 3.495 13 O -0.575 6.575 14 N -0.598 5.598 15 C 0.093 3.907 16 C 0.159 3.841 17 N -0.606 5.606 18 C -0.266 4.266 19 H 0.069 0.931 20 C -0.043 4.043 21 N -0.936 5.936 22 Si 0.972 3.028 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.272 1.272 26 C 0.130 3.870 27 C 0.107 3.893 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.425 0.575 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.166 0.834 41 H 0.085 0.915 42 H 0.103 0.897 43 H -0.010 1.010 44 H 0.080 0.920 45 H 0.252 0.748 46 H -0.003 1.003 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.204 -1.531 -15.409 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.065 4.065 3 C -0.214 4.214 4 C -0.199 4.199 5 C 0.031 3.969 6 H 0.135 0.865 7 N -0.854 5.854 8 S 2.695 3.305 9 C -0.802 4.802 10 O -0.997 6.997 11 O -0.984 6.984 12 C 0.293 3.707 13 O -0.455 6.455 14 N -0.330 5.330 15 C -0.030 4.030 16 C 0.033 3.967 17 N -0.330 5.330 18 C -0.396 4.396 19 H 0.087 0.913 20 C -0.239 4.239 21 N -0.581 5.581 22 Si 0.800 3.200 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.197 1.197 26 C 0.004 3.996 27 C -0.018 4.018 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.261 0.739 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.184 0.816 41 H 0.103 0.897 42 H 0.120 0.880 43 H 0.008 0.992 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.015 0.985 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.730 -2.579 -14.751 21.718 hybrid contribution 0.828 0.546 0.521 1.120 sum -14.901 -2.033 -14.231 20.705 Atomic orbital electron populations 1.22239 0.90914 1.03396 1.04565 1.20830 0.98371 0.95124 0.92150 1.22193 1.00916 0.94284 1.04041 1.21872 1.00199 1.00734 0.97047 1.21013 0.89559 0.83758 1.02559 0.86464 1.55282 1.67320 1.20467 1.42377 1.05035 0.77740 0.75196 0.72569 1.30529 1.18230 1.16766 1.14681 1.93634 1.69256 1.85997 1.50833 1.93561 1.85774 1.35474 1.83635 1.21316 0.91124 0.81111 0.77194 1.90605 1.72348 1.34590 1.47995 1.48133 1.07471 1.24485 1.52896 1.22815 0.96719 0.90100 0.93381 1.21166 0.83473 0.99635 0.92457 1.44185 1.02132 1.23891 1.62755 1.19522 1.07292 1.09013 1.03754 0.91313 1.25926 0.99626 1.02782 0.95587 1.70143 1.31114 1.40114 1.16736 0.85206 0.78559 0.79745 0.76490 1.20389 1.22509 1.19659 1.21363 0.96722 0.90191 0.91363 1.21981 0.79910 1.02207 0.97653 0.90158 0.89891 0.91098 0.93890 0.89825 0.90765 0.91939 0.90471 0.94800 0.73868 0.82796 0.82883 0.81573 0.89666 0.87952 0.99234 0.90175 0.93862 0.98453 0.90933 0.89982 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.08 71.98 0.51 -0.71 16 2 C -0.06 -0.97 0.62 -52.18 -0.03 -1.00 16 3 C -0.16 -2.46 6.79 71.98 0.49 -1.97 16 4 C -0.14 -2.45 7.89 71.98 0.57 -1.88 16 5 C 0.14 3.26 1.39 44.24 0.06 3.32 16 6 H 0.12 2.43 5.12 -2.39 -0.01 2.42 16 7 N -1.10 -23.91 3.94 -172.52 -0.68 -24.59 16 8 S 2.60 57.31 5.95 -56.49 -0.34 56.97 16 9 C -0.65 -5.33 9.20 113.37 1.04 -4.28 16 10 O -1.01 -34.22 17.75 -127.65 -2.27 -36.48 16 11 O -0.99 -27.87 18.08 -127.65 -2.31 -30.18 16 12 C 0.51 16.56 5.22 87.66 0.46 17.02 16 13 O -0.58 -22.15 15.06 -3.04 -0.05 -22.19 16 14 N -0.60 -20.61 2.33 -817.15 -1.90 -22.51 16 15 C 0.09 3.08 4.37 86.56 0.38 3.46 16 16 C 0.16 7.37 5.48 86.56 0.47 7.84 16 17 N -0.61 -30.08 2.96 -697.34 -2.06 -32.15 16 18 C -0.27 -14.15 9.57 84.03 0.80 -13.35 16 19 H 0.07 3.55 7.86 -2.91 -0.02 3.53 16 20 C -0.04 -2.34 5.03 84.86 0.43 -1.91 16 21 N -0.94 -53.83 11.08 21.65 0.24 -53.59 16 22 Si 0.97 43.18 29.57 68.60 2.03 45.21 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 C 0.13 5.69 6.67 86.42 0.58 6.26 16 27 C 0.11 3.88 6.60 86.41 0.57 4.45 16 28 H 0.08 0.37 6.66 -2.39 -0.02 0.35 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.41 5.76 -2.39 -0.01 0.40 16 31 H 0.04 0.90 6.36 -2.39 -0.02 0.88 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.04 6.50 -2.39 -0.02 1.02 16 34 H 0.06 1.02 6.89 -2.39 -0.02 1.00 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.03 0.80 6.64 -2.38 -0.02 0.79 16 37 H 0.42 9.00 7.49 -96.75 -0.72 8.28 16 38 H 0.15 0.77 5.90 -2.39 -0.01 0.75 16 39 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.17 0.40 7.22 -2.39 -0.02 0.38 16 41 H 0.09 2.58 7.66 -2.39 -0.02 2.56 16 42 H 0.10 2.64 4.35 -2.39 -0.01 2.63 16 43 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 44 H 0.08 4.04 6.06 -2.38 -0.01 4.03 16 45 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 47 H 0.07 2.99 7.93 -2.39 -0.02 2.98 16 48 H 0.08 2.98 6.99 -2.39 -0.02 2.96 16 49 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -83.12 374.63 -0.76 -83.87 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.25 Total: 18.40 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 6.33 Total: 17.24 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -4.41 Total: -132.84 kcal Atomic # 8 Polarization: -84.24 SS G_CDS: -4.62 Total: -88.86 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 57.31 SS G_CDS: -0.34 Total: 56.97 kcal Total: -83.12 -0.76 -83.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126441874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.714 kcal (2) G-P(sol) polarization free energy of solvation -83.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds