Wall clock time and date at job start Wed Apr 1 2020 04:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 119.99719 * 2 1 4 4 C 1.50708 * 109.46982 * 275.00011 * 3 2 1 5 5 H 1.07998 * 119.99550 * 0.02562 * 4 3 2 6 6 C 1.37868 * 119.99771 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00695 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99814 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47378 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47071 * 119.99985 * 8 6 4 11 11 H 1.48494 * 109.47106 * 239.99698 * 8 6 4 12 12 S 1.65600 * 120.00148 * 180.02562 * 2 1 3 13 13 O 1.42102 * 106.40136 * 336.45613 * 12 2 1 14 14 O 1.42104 * 106.40272 * 203.53793 * 12 2 1 15 15 N 1.65606 * 107.21727 * 89.99735 * 12 2 1 16 16 C 1.46961 * 120.59225 * 90.00008 * 15 12 2 17 17 C 1.53367 * 108.63648 * 235.20309 * 16 15 12 18 18 N 1.46972 * 108.63258 * 310.57909 * 17 16 15 19 19 C 1.34770 * 120.59057 * 235.20239 * 18 17 16 20 20 O 1.21282 * 120.00041 * 174.54609 * 19 18 17 21 21 C 1.50705 * 120.00508 * 354.54542 * 19 18 17 22 22 C 1.52997 * 109.47108 * 186.94701 * 21 19 18 23 23 C 1.53001 * 109.46910 * 306.94814 * 21 19 18 24 24 C 1.53003 * 109.46896 * 66.94758 * 21 19 18 25 25 C 1.46961 * 118.81167 * 55.22636 * 18 17 16 26 26 C 1.46960 * 120.59024 * 269.97570 * 15 12 2 27 27 H 1.09005 * 109.46911 * 270.00105 * 1 2 3 28 28 H 1.08997 * 109.47272 * 29.99646 * 1 2 3 29 29 H 1.09005 * 109.47333 * 150.00335 * 1 2 3 30 30 H 1.08993 * 109.47375 * 35.00018 * 3 2 1 31 31 H 1.09003 * 109.47110 * 155.00615 * 3 2 1 32 32 H 0.96989 * 120.00560 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.61118 * 354.94753 * 16 15 12 34 34 H 1.09004 * 109.61085 * 115.46172 * 16 15 12 35 35 H 1.09004 * 109.61070 * 70.32048 * 17 16 15 36 36 H 1.09003 * 109.61469 * 190.83671 * 17 16 15 37 37 H 1.09003 * 109.46827 * 60.00458 * 22 21 19 38 38 H 1.09008 * 109.46776 * 179.97438 * 22 21 19 39 39 H 1.08997 * 109.47473 * 300.00088 * 22 21 19 40 40 H 1.09005 * 109.47081 * 65.03519 * 23 21 19 41 41 H 1.08995 * 109.47160 * 185.02854 * 23 21 19 42 42 H 1.08997 * 109.47349 * 305.03254 * 23 21 19 43 43 H 1.09001 * 109.46956 * 55.44144 * 24 21 19 44 44 H 1.09000 * 109.46673 * 175.44502 * 24 21 19 45 45 H 1.08999 * 109.47112 * 295.44597 * 24 21 19 46 46 H 1.08999 * 109.60776 * 185.02924 * 25 18 17 47 47 H 1.08996 * 109.61563 * 64.51798 * 25 18 17 48 48 H 1.08999 * 109.61158 * 244.53821 * 26 15 12 49 49 H 1.08999 * 109.61786 * 4.88345 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 -1.4155 5 1 1.9281 1.1938 -2.2331 6 6 3.0004 2.9504 -1.6665 7 7 3.5032 3.6471 -0.6707 8 14 3.1782 3.5667 -3.4209 9 1 2.5288 2.6080 -4.3506 10 1 2.5275 4.8957 -3.5470 11 1 4.6189 3.6869 -3.7598 12 16 2.2930 -1.4341 -0.0006 13 8 1.4114 -2.4067 0.5435 14 8 3.5760 -1.1570 0.5439 15 7 2.5381 -1.8580 -1.5827 16 6 3.7443 -1.4168 -2.2969 17 6 3.3167 -0.6761 -3.5700 18 7 2.3320 -1.5006 -4.2846 19 6 2.5314 -1.8455 -5.5721 20 8 1.7636 -2.6064 -6.1220 21 6 3.7085 -1.2857 -6.3286 22 6 3.6084 -1.6912 -7.8004 23 6 3.7063 0.2403 -6.2187 24 6 5.0059 -1.8380 -5.7345 25 6 1.1257 -1.9416 -3.5703 26 6 1.5534 -2.6824 -2.2972 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6501 2.0043 0.5894 31 1 3.1858 1.1178 0.4342 32 1 3.9666 4.4806 -0.8473 33 1 4.3219 -0.7466 -1.6603 34 1 4.3490 -2.2836 -2.5637 35 1 2.8679 0.2808 -3.3033 36 1 4.1859 -0.5106 -4.2065 37 1 2.6841 -1.2977 -8.2236 38 1 4.4596 -1.2859 -8.3477 39 1 3.6099 -2.7784 -7.8788 40 1 3.8674 0.5301 -5.1803 41 1 4.5040 0.6504 -6.8381 42 1 2.7462 0.6278 -6.5593 43 1 4.9725 -2.9275 -5.7389 44 1 5.8523 -1.4979 -6.3312 45 1 5.1169 -1.4820 -4.7103 46 1 0.5482 -2.6119 -4.2069 47 1 0.5210 -1.0750 -3.3036 48 1 2.0021 -3.6392 -2.5640 49 1 0.6854 -2.8505 -1.6597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130840431.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:33 Heat of formation + Delta-G solvation = -87.072565 kcal Electronic energy + Delta-G solvation = -32371.470630 eV Core-core repulsion = 28268.458957 eV Total energy + Delta-G solvation = -4103.011673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.62897 -37.54359 -36.82001 -35.92050 -35.55917 -35.31134 -33.60668 -32.62159 -31.25162 -27.89412 -27.48237 -27.33999 -27.16438 -25.17743 -23.87029 -23.12928 -22.36638 -20.78246 -19.34828 -18.08220 -17.28691 -16.93195 -16.59610 -16.16505 -16.07133 -15.87423 -15.36495 -14.87262 -14.75559 -14.49542 -14.16713 -14.03294 -13.73536 -13.52220 -13.35886 -12.76834 -12.49351 -12.43945 -12.40463 -12.28042 -12.24930 -12.20090 -11.99889 -11.80247 -11.77209 -11.64388 -11.36632 -11.27385 -11.23431 -11.12192 -11.02639 -10.93552 -10.79489 -10.63635 -10.46996 -10.09732 -9.85039 -9.50029 -9.23859 -8.63170 -8.25045 -8.07677 -6.23516 -4.30819 1.13816 2.71445 3.02363 3.10813 3.19561 3.22225 3.39227 4.02568 4.22262 4.35921 4.68502 4.76733 4.78078 4.82586 5.03481 5.10091 5.13514 5.24699 5.37055 5.41138 5.44862 5.47416 5.50597 5.56515 5.64465 5.68247 5.74301 5.76436 5.77581 5.89771 5.94355 6.00837 6.04229 6.12432 6.15438 6.21607 6.24793 6.36133 6.46500 6.59525 6.76053 7.25871 7.33911 7.51400 7.54587 7.73892 8.03992 8.25733 8.74111 9.34660 10.84382 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009797 B = 0.006173 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.186541 B = 4534.942393 C = 6388.358702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.996 5.996 3 C 0.243 3.757 4 C -0.541 4.541 5 H 0.068 0.932 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.879 3.121 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.279 1.279 12 S 2.785 3.215 13 O -0.997 6.997 14 O -0.975 6.975 15 N -1.003 6.003 16 C 0.116 3.884 17 C 0.052 3.948 18 N -0.599 5.599 19 C 0.526 3.474 20 O -0.551 6.551 21 C -0.086 4.086 22 C -0.123 4.123 23 C -0.164 4.164 24 C -0.154 4.154 25 C 0.097 3.903 26 C 0.112 3.888 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.265 0.735 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 -8.092 -8.349 11.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.838 5.838 3 C 0.121 3.879 4 C -0.581 4.581 5 H 0.086 0.914 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.706 3.294 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.205 1.205 12 S 2.794 3.206 13 O -0.981 6.981 14 O -0.959 6.959 15 N -0.841 5.841 16 C -0.010 4.010 17 C -0.071 4.071 18 N -0.332 5.332 19 C 0.314 3.686 20 O -0.429 6.429 21 C -0.089 4.089 22 C -0.181 4.181 23 C -0.221 4.221 24 C -0.211 4.211 25 C -0.027 4.027 26 C -0.015 4.015 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.054 -8.810 -7.793 11.762 hybrid contribution -0.065 0.913 -1.275 1.569 sum -0.011 -7.898 -9.068 12.025 Atomic orbital electron populations 1.21220 0.80086 1.02000 1.00689 1.57672 1.14217 1.23469 1.88485 1.19236 0.92210 0.78909 0.97555 1.21628 1.36667 1.06846 0.92917 0.91418 1.24930 0.95305 0.96474 0.96908 1.69926 1.36479 1.15087 1.30776 0.86768 0.78214 0.79435 0.84997 1.19105 1.20916 1.20508 1.01848 0.73176 0.72699 0.72881 1.93534 1.67357 1.60391 1.76811 1.93573 1.40762 1.85263 1.76280 1.58196 1.29273 1.64885 1.31787 1.21709 0.86236 0.99016 0.94087 1.23318 0.93809 0.96191 0.93774 1.47897 1.22216 1.52068 1.10972 1.20570 0.86324 0.80306 0.81365 1.90639 1.47890 1.36082 1.68259 1.20767 0.94222 0.97133 0.96827 1.21623 1.01849 1.02009 0.92574 1.22356 1.02962 0.92524 1.04230 1.22168 0.95468 1.01530 1.01887 1.21975 0.87308 1.00086 0.93325 1.21688 0.92410 0.93699 0.93681 0.93711 0.90787 0.93035 0.94412 0.93087 0.92516 0.87183 0.91717 0.87267 0.86995 0.92237 0.92150 0.91959 0.90103 0.91389 0.92046 0.92016 0.91217 0.90687 0.88386 0.90605 0.91150 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.72 10.31 59.85 0.62 2.33 16 2 N -1.00 -19.20 3.23 -123.05 -0.40 -19.60 16 3 C 0.24 5.57 5.41 -5.19 -0.03 5.54 16 4 C -0.54 -12.58 8.77 -34.44 -0.30 -12.89 16 5 H 0.07 1.49 5.56 -52.49 -0.29 1.20 16 6 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 7 N -0.88 -23.52 13.29 55.43 0.74 -22.78 16 8 Si 0.88 18.54 29.54 -169.99 -5.02 13.52 16 9 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 12 S 2.79 52.57 6.07 -107.50 -0.65 51.92 16 13 O -1.00 -19.57 15.90 -57.17 -0.91 -20.47 16 14 O -0.97 -21.30 15.38 -57.17 -0.88 -22.18 16 15 N -1.00 -15.90 3.32 -113.26 -0.38 -16.28 16 16 C 0.12 1.74 6.46 -3.60 -0.02 1.71 16 17 C 0.05 0.76 4.30 -3.59 -0.02 0.74 16 18 N -0.60 -8.68 2.93 -172.48 -0.51 -9.19 16 19 C 0.53 7.80 6.48 -10.99 -0.07 7.73 16 20 O -0.55 -9.59 15.39 5.56 0.09 -9.50 16 21 C -0.09 -1.04 0.75 -155.66 -0.12 -1.16 16 22 C -0.12 -1.36 7.79 37.16 0.29 -1.07 16 23 C -0.16 -1.99 8.05 37.16 0.30 -1.69 16 24 C -0.15 -1.55 8.20 37.16 0.30 -1.25 16 25 C 0.10 1.34 6.60 -3.60 -0.02 1.31 16 26 C 0.11 1.52 6.55 -3.60 -0.02 1.50 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 29 H 0.05 0.72 7.79 -51.93 -0.40 0.31 16 30 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.05 1.29 6.92 -51.93 -0.36 0.93 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.11 1.82 7.09 -51.93 -0.37 1.45 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.11 1.88 5.03 -51.93 -0.26 1.61 16 36 H 0.11 1.42 2.29 -51.93 -0.12 1.30 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.06 0.72 8.02 -51.93 -0.42 0.30 16 40 H 0.08 1.06 4.54 -51.93 -0.24 0.83 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.76 5.00 -51.93 -0.26 0.50 16 46 H 0.10 1.32 6.99 -51.93 -0.36 0.96 16 47 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.10 1.23 7.09 -51.93 -0.37 0.86 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -30.49 383.74 -8.98 -39.46 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.65 Total: 4.93 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 0.81 Total: 4.38 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -0.54 Total: -67.84 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -1.70 Total: -52.15 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Atomic # 16 Polarization: 52.57 SS G_CDS: -0.65 Total: 51.92 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.49 -8.98 -39.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130840431.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.608 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds