Wall clock time and date at job start Wed Apr 1 2020 04:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34222 * 117.00054 * 2 1 4 4 O 1.20826 * 120.00564 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99785 * 179.72151 * 3 2 1 6 6 C 1.52998 * 109.46997 * 174.35817 * 5 3 2 7 7 C 1.52995 * 109.47509 * 302.86845 * 6 5 3 8 8 N 1.46502 * 109.47169 * 304.96481 * 7 6 5 9 9 S 1.65603 * 119.99747 * 163.64459 * 8 7 6 10 10 O 1.42104 * 104.27450 * 181.07044 * 9 8 7 11 11 O 1.42098 * 104.28272 * 308.93471 * 9 8 7 12 12 C 1.81409 * 104.44709 * 65.00647 * 9 8 7 13 13 C 1.52998 * 109.46918 * 179.97438 * 12 9 8 14 14 C 1.50697 * 109.46713 * 179.97438 * 13 12 9 15 15 H 1.08002 * 120.00374 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99931 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99923 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99934 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47670 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47265 * 120.00258 * 18 16 14 21 21 H 1.48504 * 109.47298 * 239.99782 * 18 16 14 22 22 C 1.53001 * 109.46872 * 182.86905 * 6 5 3 23 23 C 1.53003 * 109.47180 * 300.00259 * 22 6 5 24 24 C 1.53004 * 109.47129 * 299.99748 * 23 22 6 25 25 C 1.53004 * 109.46630 * 60.00343 * 24 23 22 26 26 C 1.52998 * 109.46925 * 62.87251 * 6 5 3 27 27 H 1.08999 * 109.46725 * 300.00255 * 1 2 3 28 28 H 1.09006 * 109.46616 * 59.99869 * 1 2 3 29 29 H 1.08992 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47018 * 294.36159 * 5 3 2 31 31 H 1.09001 * 109.46850 * 54.35867 * 5 3 2 32 32 H 1.09007 * 109.46841 * 64.96451 * 7 6 5 33 33 H 1.09003 * 109.47366 * 184.96556 * 7 6 5 34 34 H 0.96994 * 119.99695 * 343.65327 * 8 7 6 35 35 H 1.08995 * 109.46811 * 299.99451 * 12 9 8 36 36 H 1.09000 * 109.47274 * 59.99489 * 12 9 8 37 37 H 1.08995 * 109.47079 * 299.99468 * 13 12 9 38 38 H 1.09000 * 109.47417 * 59.99758 * 13 12 9 39 39 H 0.96994 * 119.99732 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.47299 * 60.00439 * 22 6 5 41 41 H 1.09007 * 109.47411 * 180.02562 * 22 6 5 42 42 H 1.09001 * 109.46998 * 180.02562 * 23 22 6 43 43 H 1.08999 * 109.47389 * 59.99933 * 23 22 6 44 44 H 1.08999 * 109.47136 * 300.00341 * 24 23 22 45 45 H 1.08994 * 109.47211 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.46795 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.47791 * 59.99817 * 25 24 23 48 48 H 1.09008 * 109.46951 * 179.97438 * 26 6 5 49 49 H 1.08998 * 109.47045 * 299.99605 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0063 6 6 4.0012 2.7346 -0.1368 7 6 3.4071 3.3204 -1.4193 8 7 3.7875 2.4838 -2.5602 9 16 2.9766 2.6249 -3.9972 10 8 3.5903 1.6611 -4.8420 11 8 1.6059 2.5177 -3.6382 12 6 3.3556 4.3047 -4.5677 13 6 2.6556 4.5595 -5.9041 14 6 2.9700 5.9551 -6.3776 15 1 3.6052 6.5964 -5.7846 16 6 2.4468 6.4134 -7.5681 17 7 1.6737 5.6324 -8.2906 18 14 2.8371 8.1431 -8.1555 19 1 3.7225 8.8130 -7.1693 20 1 3.5223 8.0763 -9.4713 21 1 1.5763 8.9157 -8.2928 22 6 5.5281 2.8079 -0.2023 23 6 6.1222 2.2221 1.0802 24 6 5.6245 3.0230 2.2851 25 6 4.0976 2.9497 2.3506 26 6 3.5034 3.5355 1.0681 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9473 0.8725 0.9450 31 1 3.9641 0.6939 -0.8258 32 1 2.3206 3.3494 -1.3361 33 1 3.7873 4.3312 -1.5672 34 1 4.5142 1.8472 -2.4738 35 1 3.0051 5.0266 -3.8301 36 1 4.4329 4.4104 -4.6962 37 1 3.0065 3.8376 -6.6414 38 1 1.5784 4.4537 -5.7760 39 1 1.3053 5.9550 -9.1279 40 1 5.8827 2.2374 -1.0606 41 1 5.8380 3.8480 -0.3038 42 1 7.2100 2.2747 1.0338 43 1 5.8124 1.1820 1.1822 44 1 5.9343 4.0630 2.1831 45 1 6.0474 2.6054 3.1988 46 1 3.7429 3.5206 3.2087 47 1 3.7877 1.9097 2.4525 48 1 3.8136 4.5755 0.9663 49 1 2.4157 3.4833 1.1147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185193360.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:22 Heat of formation + Delta-G solvation = -184.935304 kcal Electronic energy + Delta-G solvation = -30535.047353 eV Core-core repulsion = 26395.499282 eV Total energy + Delta-G solvation = -4139.548071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.22856 -39.30806 -36.56435 -36.46310 -35.43566 -35.14741 -33.86913 -31.89773 -31.13936 -30.99459 -29.30637 -27.03216 -25.57819 -25.49819 -22.95077 -21.76117 -21.59668 -21.20276 -18.91713 -18.76567 -17.71071 -17.50109 -16.87505 -16.62924 -16.34816 -15.84903 -15.59786 -15.26361 -14.88283 -14.68016 -14.52344 -14.47917 -14.07593 -13.69219 -13.37745 -13.30106 -13.02868 -12.85518 -12.50183 -12.45598 -12.16374 -12.09841 -11.81597 -11.72266 -11.56081 -11.50024 -11.44313 -11.41170 -11.29833 -11.07923 -10.93358 -10.81694 -10.74975 -10.49613 -10.38380 -10.36202 -10.28652 -9.91152 -9.72125 -9.38196 -8.95622 -8.49123 -6.10959 -4.16249 0.84599 2.16442 2.64265 3.20056 3.26341 3.33491 3.37054 4.18975 4.25820 4.35814 4.38271 4.42219 4.63906 4.77302 4.83595 4.91025 4.94644 5.01347 5.03376 5.13496 5.15586 5.21907 5.24329 5.25198 5.36088 5.39829 5.46381 5.50457 5.60439 5.65609 5.72073 5.77761 5.80059 5.83483 5.89692 5.96584 6.00508 6.10257 6.14565 6.20787 6.50634 6.52011 7.12637 7.32441 7.38730 7.71645 7.82391 8.19533 8.87378 9.48386 11.00207 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013372 B = 0.003084 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.465791 B = 9078.276049 C =10113.376639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.460 3.540 4 O -0.490 6.490 5 C -0.110 4.110 6 C -0.045 4.045 7 C 0.108 3.892 8 N -1.129 6.129 9 S 2.590 3.410 10 O -0.970 6.970 11 O -0.963 6.963 12 C -0.589 4.589 13 C 0.027 3.973 14 C -0.519 4.519 15 H 0.062 0.938 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.111 4.111 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.124 4.124 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.408 0.592 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.643 -9.410 23.855 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.280 6.280 3 C 0.304 3.696 4 O -0.377 6.377 5 C -0.147 4.147 6 C -0.047 4.047 7 C -0.018 4.018 8 N -0.888 5.888 9 S 2.688 3.312 10 O -0.960 6.960 11 O -0.953 6.953 12 C -0.722 4.722 13 C -0.012 4.012 14 C -0.558 4.558 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.149 4.149 23 C -0.160 4.160 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.162 4.162 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.242 0.758 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.607 -9.702 23.305 25.859 hybrid contribution 0.657 1.289 -0.313 1.480 sum 6.264 -8.414 22.992 25.272 Atomic orbital electron populations 1.23284 0.76175 1.03553 1.02939 1.86466 1.23661 1.33687 1.84207 1.23677 0.92089 0.81434 0.72450 1.90570 1.67205 1.35658 1.44313 1.21611 0.88017 0.99351 1.05743 1.20543 0.95699 0.92804 0.95620 1.21716 1.02623 0.93329 0.84121 1.55876 1.52083 1.52610 1.28185 1.05588 0.74353 0.78535 0.72744 1.93548 1.77569 1.58762 1.66147 1.93552 1.33193 1.86764 1.81815 1.30431 1.10803 1.19872 1.11134 1.18962 0.95696 0.99542 0.86954 1.21045 1.31035 0.97885 1.05855 0.91995 1.25075 0.94919 0.98001 0.96554 1.69966 1.32569 1.36231 1.14102 0.86414 0.78222 0.83946 0.78700 1.19643 1.20809 1.20802 1.21642 0.92949 1.02395 0.97884 1.21606 1.00177 0.99640 0.94623 1.21560 0.95730 1.00655 0.97839 1.21586 0.95409 1.00988 0.97824 1.21844 1.02907 0.99101 0.92334 0.92041 0.91181 0.88341 0.87079 0.87742 0.87673 0.91532 0.75773 0.86314 0.86158 0.94897 0.94852 0.92606 0.91329 0.90703 0.91774 0.91801 0.91825 0.92266 0.91894 0.92279 0.91300 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.33 10.57 -39.24 -0.41 -4.74 16 3 C 0.46 5.64 7.37 36.01 0.27 5.90 16 4 O -0.49 -7.06 11.15 -18.75 -0.21 -7.27 16 5 C -0.11 -0.99 3.91 -27.88 -0.11 -1.10 16 6 C -0.05 -0.41 0.28 -154.51 -0.04 -0.45 16 7 C 0.11 1.30 4.62 -4.04 -0.02 1.28 16 8 N -1.13 -14.65 5.22 -10.61 -0.06 -14.71 16 9 S 2.59 47.40 5.46 -107.50 -0.59 46.81 16 10 O -0.97 -20.34 18.08 -57.54 -1.04 -21.38 16 11 O -0.96 -20.70 17.48 -57.54 -1.01 -21.71 16 12 C -0.59 -11.49 6.01 37.16 0.22 -11.27 16 13 C 0.03 0.71 4.98 -27.89 -0.14 0.58 16 14 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 18 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.11 -0.81 4.60 -26.73 -0.12 -0.94 16 23 C -0.12 -0.75 5.65 -26.73 -0.15 -0.90 16 24 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 25 C -0.12 -0.85 5.65 -26.73 -0.15 -1.00 16 26 C -0.12 -1.10 4.47 -26.73 -0.12 -1.22 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.11 0.76 4.81 -51.93 -0.25 0.51 16 31 H 0.10 0.88 7.02 -51.93 -0.36 0.51 16 32 H 0.11 1.54 5.17 -51.93 -0.27 1.27 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.41 4.27 6.48 -34.48 -0.22 4.05 16 35 H 0.12 2.10 8.14 -51.93 -0.42 1.67 16 36 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.07 0.47 6.87 -51.93 -0.36 0.12 16 41 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.36 6.49 -51.93 -0.34 0.02 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.41 6.37 -51.93 -0.33 0.08 16 48 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 49 H 0.09 1.00 5.56 -51.93 -0.29 0.71 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -36.44 389.47 -9.47 -45.91 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.88 Total: 2.79 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 0.13 Total: -21.92 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.68 Total: -40.74 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -2.67 Total: -55.09 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 47.40 SS G_CDS: -0.59 Total: 46.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.44 -9.47 -45.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185193360.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.026 kcal (2) G-P(sol) polarization free energy of solvation -36.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds