Wall clock time and date at job start Wed Apr 1 2020 04:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34222 * 117.00054 * 2 1 4 4 O 1.20826 * 120.00564 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99785 * 179.72151 * 3 2 1 6 6 C 1.52998 * 109.46997 * 174.35817 * 5 3 2 7 7 C 1.52995 * 109.47509 * 302.86845 * 6 5 3 8 8 N 1.46502 * 109.47169 * 304.96481 * 7 6 5 9 9 S 1.65603 * 119.99747 * 163.64459 * 8 7 6 10 10 O 1.42104 * 104.27450 * 181.07044 * 9 8 7 11 11 O 1.42098 * 104.28272 * 308.93471 * 9 8 7 12 12 C 1.81409 * 104.44709 * 65.00647 * 9 8 7 13 13 C 1.52998 * 109.46918 * 179.97438 * 12 9 8 14 14 C 1.50697 * 109.46713 * 179.97438 * 13 12 9 15 15 H 1.08002 * 120.00374 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99931 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99923 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99934 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47670 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47265 * 120.00258 * 18 16 14 21 21 H 1.48504 * 109.47298 * 239.99782 * 18 16 14 22 22 C 1.53001 * 109.46872 * 182.86905 * 6 5 3 23 23 C 1.53003 * 109.47180 * 300.00259 * 22 6 5 24 24 C 1.53004 * 109.47129 * 299.99748 * 23 22 6 25 25 C 1.53004 * 109.46630 * 60.00343 * 24 23 22 26 26 C 1.52998 * 109.46925 * 62.87251 * 6 5 3 27 27 H 1.08999 * 109.46725 * 300.00255 * 1 2 3 28 28 H 1.09006 * 109.46616 * 59.99869 * 1 2 3 29 29 H 1.08992 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47018 * 294.36159 * 5 3 2 31 31 H 1.09001 * 109.46850 * 54.35867 * 5 3 2 32 32 H 1.09007 * 109.46841 * 64.96451 * 7 6 5 33 33 H 1.09003 * 109.47366 * 184.96556 * 7 6 5 34 34 H 0.96994 * 119.99695 * 343.65327 * 8 7 6 35 35 H 1.08995 * 109.46811 * 299.99451 * 12 9 8 36 36 H 1.09000 * 109.47274 * 59.99489 * 12 9 8 37 37 H 1.08995 * 109.47079 * 299.99468 * 13 12 9 38 38 H 1.09000 * 109.47417 * 59.99758 * 13 12 9 39 39 H 0.96994 * 119.99732 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.47299 * 60.00439 * 22 6 5 41 41 H 1.09007 * 109.47411 * 180.02562 * 22 6 5 42 42 H 1.09001 * 109.46998 * 180.02562 * 23 22 6 43 43 H 1.08999 * 109.47389 * 59.99933 * 23 22 6 44 44 H 1.08999 * 109.47136 * 300.00341 * 24 23 22 45 45 H 1.08994 * 109.47211 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.46795 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.47791 * 59.99817 * 25 24 23 48 48 H 1.09008 * 109.46951 * 179.97438 * 26 6 5 49 49 H 1.08998 * 109.47045 * 299.99605 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0063 6 6 4.0012 2.7346 -0.1368 7 6 3.4071 3.3204 -1.4193 8 7 3.7875 2.4838 -2.5602 9 16 2.9766 2.6249 -3.9972 10 8 3.5903 1.6611 -4.8420 11 8 1.6059 2.5177 -3.6382 12 6 3.3556 4.3047 -4.5677 13 6 2.6556 4.5595 -5.9041 14 6 2.9700 5.9551 -6.3776 15 1 3.6052 6.5964 -5.7846 16 6 2.4468 6.4134 -7.5681 17 7 1.6737 5.6324 -8.2906 18 14 2.8371 8.1431 -8.1555 19 1 3.7225 8.8130 -7.1693 20 1 3.5223 8.0763 -9.4713 21 1 1.5763 8.9157 -8.2928 22 6 5.5281 2.8079 -0.2023 23 6 6.1222 2.2221 1.0802 24 6 5.6245 3.0230 2.2851 25 6 4.0976 2.9497 2.3506 26 6 3.5034 3.5355 1.0681 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9473 0.8725 0.9450 31 1 3.9641 0.6939 -0.8258 32 1 2.3206 3.3494 -1.3361 33 1 3.7873 4.3312 -1.5672 34 1 4.5142 1.8472 -2.4738 35 1 3.0051 5.0266 -3.8301 36 1 4.4329 4.4104 -4.6962 37 1 3.0065 3.8376 -6.6414 38 1 1.5784 4.4537 -5.7760 39 1 1.3053 5.9550 -9.1279 40 1 5.8827 2.2374 -1.0606 41 1 5.8380 3.8480 -0.3038 42 1 7.2100 2.2747 1.0338 43 1 5.8124 1.1820 1.1822 44 1 5.9343 4.0630 2.1831 45 1 6.0474 2.6054 3.1988 46 1 3.7429 3.5206 3.2087 47 1 3.7877 1.9097 2.4525 48 1 3.8136 4.5755 0.9663 49 1 2.4157 3.4833 1.1147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185193360.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:21 Heat of formation + Delta-G solvation = -210.528371 kcal Electronic energy + Delta-G solvation = -30536.157152 eV Core-core repulsion = 26395.499282 eV Total energy + Delta-G solvation = -4140.657870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.06823 -40.08582 -38.16159 -37.39854 -37.03312 -36.14036 -35.90923 -33.14309 -32.70376 -31.56917 -30.09517 -27.82599 -27.59934 -26.35796 -23.71316 -23.42435 -22.56755 -21.86835 -20.32623 -19.49602 -19.11350 -18.61069 -18.38447 -17.68653 -17.55201 -17.05894 -16.93603 -16.55306 -16.28065 -15.99766 -15.41325 -15.32427 -15.11218 -14.75987 -14.48563 -14.35259 -14.11360 -13.86211 -13.80374 -13.66379 -13.21940 -13.19115 -13.11221 -12.96850 -12.95895 -12.89141 -12.78317 -12.67435 -12.30359 -12.23990 -12.14790 -12.10883 -11.90371 -11.76167 -11.67744 -11.56118 -11.17062 -11.05471 -10.92154 -10.66792 -10.60904 -10.26281 -8.27148 -6.41307 -0.68295 1.24897 1.40189 1.41068 1.54458 1.81722 1.86903 2.37255 2.78454 3.06286 3.25071 3.51812 3.60701 3.73100 3.98271 4.05729 4.11471 4.14041 4.27332 4.29721 4.31844 4.33611 4.38867 4.46187 4.55116 4.65724 4.68828 4.71122 4.71979 4.75389 4.80160 4.88439 5.06755 5.12320 5.24534 5.26046 5.26187 5.28783 5.33900 5.37174 5.44024 5.51442 5.65833 5.67349 5.70887 6.04733 6.15322 6.72523 6.80452 7.28940 8.85526 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013372 B = 0.003084 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.465791 B = 9078.276049 C =10113.376639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.450 3.550 4 O -0.518 6.518 5 C -0.111 4.111 6 C -0.038 4.038 7 C 0.099 3.901 8 N -1.105 6.105 9 S 2.616 3.384 10 O -0.997 6.997 11 O -0.999 6.999 12 C -0.587 4.587 13 C 0.020 3.980 14 C -0.538 4.538 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.976 3.024 19 H -0.255 1.255 20 H -0.277 1.277 21 H -0.279 1.279 22 C -0.110 4.110 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.123 4.123 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.424 0.576 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.007 0.993 38 H 0.003 0.997 39 H 0.267 0.733 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.165 -8.897 25.736 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.295 3.705 4 O -0.407 6.407 5 C -0.148 4.148 6 C -0.040 4.040 7 C -0.027 4.027 8 N -0.868 5.868 9 S 2.712 3.288 10 O -0.988 6.988 11 O -0.988 6.988 12 C -0.719 4.719 13 C -0.019 4.019 14 C -0.577 4.577 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.574 5.574 18 Si 0.799 3.201 19 H -0.178 1.178 20 H -0.203 1.203 21 H -0.204 1.204 22 C -0.148 4.148 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.161 4.161 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.262 0.738 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.025 0.975 38 H 0.022 0.978 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.148 -9.203 25.192 28.031 hybrid contribution -0.181 1.084 -0.824 1.374 sum 7.968 -8.119 24.368 26.892 Atomic orbital electron populations 1.23455 0.75539 1.05365 1.02108 1.86469 1.24460 1.33724 1.84033 1.24412 0.93403 0.81081 0.71644 1.90575 1.68094 1.36476 1.45579 1.21802 0.85761 0.99638 1.07565 1.20526 0.97009 0.92609 0.93852 1.21917 1.01506 0.94334 0.84909 1.55292 1.52074 1.53076 1.26404 1.04525 0.73604 0.77418 0.73223 1.93502 1.77871 1.59475 1.67902 1.93513 1.35798 1.86936 1.82595 1.30324 1.11725 1.21732 1.08156 1.18823 0.94577 0.98630 0.89881 1.21546 1.31018 0.98844 1.06276 0.90531 1.26147 0.94600 1.02800 0.96817 1.70112 1.33923 1.38673 1.14740 0.85239 0.78285 0.78145 0.78425 1.17828 1.20255 1.20429 1.21665 0.91036 1.02964 0.99087 1.21611 1.00704 0.99916 0.93586 1.21546 0.94681 1.00801 0.98483 1.21561 0.96219 1.00977 0.96693 1.21792 1.01555 0.99456 0.93254 0.91286 0.93613 0.85278 0.84345 0.86785 0.90391 0.89787 0.73787 0.84344 0.83586 0.97498 0.97825 0.92389 0.90574 0.90441 0.90757 0.90926 0.91942 0.91213 0.91761 0.91986 0.91082 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.37 -8.66 10.57 -51.34 -0.54 -9.20 16 3 C 0.45 10.86 7.37 71.24 0.52 11.39 16 4 O -0.52 -15.31 11.15 21.96 0.24 -15.07 16 5 C -0.11 -1.79 3.91 29.85 0.12 -1.67 16 6 C -0.04 -0.62 0.28 -52.18 -0.01 -0.64 16 7 C 0.10 2.26 4.62 86.38 0.40 2.66 16 8 N -1.11 -27.22 5.22 -187.48 -0.98 -28.20 16 9 S 2.62 96.25 5.46 -56.49 -0.31 95.94 16 10 O -1.00 -42.04 18.08 -127.65 -2.31 -44.35 16 11 O -1.00 -44.32 17.48 -127.65 -2.23 -46.55 16 12 C -0.59 -22.73 6.01 71.98 0.43 -22.29 16 13 C 0.02 1.06 4.98 29.85 0.15 1.21 16 14 C -0.54 -30.26 9.11 25.60 0.23 -30.02 16 15 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 16 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 17 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 18 Si 0.98 43.73 29.54 68.60 2.03 45.75 16 19 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 C -0.11 -1.25 4.60 30.60 0.14 -1.11 16 23 C -0.12 -1.03 5.65 30.60 0.17 -0.85 16 24 C -0.12 -1.08 5.92 30.60 0.18 -0.90 16 25 C -0.12 -1.40 5.65 30.60 0.17 -1.23 16 26 C -0.12 -2.01 4.47 30.59 0.14 -1.87 16 27 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 28 H 0.04 1.13 8.13 -2.38 -0.02 1.11 16 29 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.14 1.48 4.81 -2.39 -0.01 1.47 16 31 H 0.11 1.64 7.02 -2.39 -0.02 1.62 16 32 H 0.08 2.31 5.17 -2.38 -0.01 2.30 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.42 7.92 6.48 -96.75 -0.63 7.30 16 35 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 36 H 0.15 4.85 8.14 -2.39 -0.02 4.83 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.08 0.77 6.87 -2.39 -0.02 0.75 16 41 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.07 0.51 6.49 -2.39 -0.02 0.49 16 44 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 0.70 6.37 -2.39 -0.02 0.69 16 48 H 0.07 1.10 8.14 -2.38 -0.02 1.09 16 49 H 0.07 1.50 5.56 -2.39 -0.01 1.48 16 Total: -1.00 -81.44 389.47 0.82 -80.62 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.33 Total: 21.84 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 4.30 Total: -43.41 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -0.69 Total: -85.58 kcal Atomic # 8 Polarization: -110.34 SS G_CDS: -4.84 Total: -115.18 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 96.25 SS G_CDS: -0.31 Total: 95.94 kcal Total: -81.44 0.82 -80.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185193360.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.905 kcal (2) G-P(sol) polarization free energy of solvation -81.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds