Wall clock time and date at job start Wed Apr 1 2020 04:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34687 * 117.00041 * 2 1 4 4 O 1.21431 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.48055 * 120.00168 * 179.97438 * 3 2 1 6 6 C 1.39234 * 119.68315 * 180.02562 * 5 3 2 7 7 C 1.38754 * 119.19937 * 180.02562 * 6 5 3 8 8 C 1.38349 * 118.57163 * 0.02562 * 7 6 5 9 9 C 1.39374 * 119.30154 * 0.02562 * 8 7 6 10 10 N 1.39398 * 119.62318 * 180.02562 * 9 8 7 11 11 C 1.34781 * 119.99877 * 185.74778 * 10 9 8 12 12 O 1.21270 * 120.00058 * 4.85795 * 11 10 9 13 13 C 1.50703 * 119.99938 * 184.85436 * 11 10 9 14 14 N 1.46895 * 109.47064 * 180.02562 * 13 11 10 15 15 C 1.46905 * 110.99912 * 190.00401 * 14 13 11 16 16 C 1.50695 * 109.47404 * 75.55183 * 15 14 13 17 17 H 1.07998 * 120.00130 * 355.31437 * 16 15 14 18 18 C 1.37880 * 120.00148 * 175.30863 * 16 15 14 19 19 N 1.31514 * 120.00068 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99794 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47557 * 89.99709 * 20 18 16 22 22 H 1.48497 * 109.47290 * 210.00056 * 20 18 16 23 23 H 1.48504 * 109.47018 * 329.99914 * 20 18 16 24 24 C 1.46897 * 111.00180 * 66.04437 * 14 13 11 25 25 C 1.53001 * 109.47033 * 187.91426 * 24 14 13 26 26 C 1.52998 * 117.49963 * 243.30262 * 25 24 14 27 27 C 1.52994 * 117.50093 * 174.67717 * 25 24 14 28 28 N 1.32006 * 120.75167 * 0.27261 * 9 8 7 29 29 H 1.08997 * 109.47576 * 59.99948 * 1 2 3 30 30 H 1.09006 * 109.46706 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47136 * 299.99506 * 1 2 3 32 32 H 1.07997 * 120.40056 * 0.04414 * 6 5 3 33 33 H 1.07994 * 120.71119 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.34459 * 180.02562 * 8 7 6 35 35 H 0.96999 * 120.00059 * 5.74260 * 10 9 8 36 36 H 1.09003 * 109.46839 * 60.00214 * 13 11 10 37 37 H 1.09004 * 109.46917 * 300.00068 * 13 11 10 38 38 H 1.09001 * 109.47149 * 195.55696 * 15 14 13 39 39 H 1.09005 * 109.46755 * 315.55486 * 15 14 13 40 40 H 0.96995 * 119.99569 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.47442 * 307.91272 * 24 14 13 42 42 H 1.09003 * 109.46713 * 67.91741 * 24 14 13 43 43 H 1.09004 * 115.54897 * 29.00687 * 25 24 14 44 44 H 1.09007 * 117.50062 * 359.97438 * 26 25 24 45 45 H 1.09003 * 117.50145 * 145.02269 * 26 25 24 46 46 H 1.08992 * 117.50207 * 214.97641 * 27 25 24 47 47 H 1.09003 * 117.49902 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4020 2.2185 0.0005 5 6 3.5419 1.2776 0.0006 6 6 4.1671 2.5217 0.0011 7 6 5.5533 2.5826 0.0011 8 6 6.2677 1.3978 0.0000 9 6 5.5791 0.1861 -0.0016 10 7 6.2922 -1.0117 -0.0021 11 6 5.6391 -2.1847 -0.1206 12 8 4.4421 -2.1954 -0.3149 13 6 6.3964 -3.4831 -0.0115 14 7 5.4658 -4.6079 -0.1751 15 6 6.1164 -5.8822 0.1583 16 6 6.2413 -6.0060 1.6549 17 1 5.9438 -5.1858 2.2914 18 6 6.7353 -7.1666 2.2118 19 7 6.8438 -7.2749 3.5179 20 14 7.2503 -8.5851 1.1109 21 1 8.6846 -8.4397 0.7545 22 1 7.0465 -9.8686 1.8294 23 1 6.4293 -8.5748 -0.1265 24 6 4.9120 -4.6395 -1.5353 25 6 3.8066 -5.6947 -1.6115 26 6 4.0280 -6.8832 -2.5492 27 6 3.0159 -5.7964 -2.9173 28 7 4.2593 0.1598 -0.0075 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.5802 3.4282 0.0018 33 1 6.0636 3.5344 0.0011 34 1 7.3476 1.4119 0.0004 35 1 7.2584 -1.0009 0.0826 36 1 6.8729 -3.5447 0.9668 37 1 7.1580 -3.5260 -0.7901 38 1 5.5170 -6.7076 -0.2259 39 1 7.1082 -5.9126 -0.2929 40 1 7.1910 -8.0915 3.9096 41 1 4.4984 -3.6617 -1.7820 42 1 5.7021 -4.8891 -2.2435 43 1 3.2688 -5.8801 -0.6817 44 1 4.9610 -6.9132 -3.1121 45 1 3.6359 -7.8509 -2.2364 46 1 1.9581 -6.0492 -2.8467 47 1 3.2834 -5.1119 -3.7223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346431294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:06 Heat of formation + Delta-G solvation = -43.333358 kcal Electronic energy + Delta-G solvation = -30480.877727 eV Core-core repulsion = 26244.318777 eV Total energy + Delta-G solvation = -4236.558950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.11658 -41.30868 -40.22114 -38.87797 -37.63199 -36.78304 -35.90031 -34.52738 -33.68496 -31.81753 -30.25265 -29.25293 -28.79799 -26.14478 -25.81358 -24.40447 -23.21625 -22.77378 -22.47079 -21.44714 -21.01908 -19.65031 -18.94497 -18.63565 -18.11979 -17.54260 -17.52498 -17.03022 -16.91917 -16.61630 -16.39487 -16.17946 -15.81545 -15.27367 -15.16072 -14.92093 -14.89708 -14.67646 -14.30102 -14.18348 -14.12511 -13.62926 -13.45531 -13.21272 -13.04793 -13.03040 -12.54301 -12.47466 -12.33426 -12.18459 -12.09201 -11.86016 -11.83610 -11.76422 -11.47439 -11.21099 -11.12165 -10.95401 -10.75779 -10.65161 -10.11392 -9.42356 -8.96379 -8.23538 -6.26207 -0.57477 0.21476 1.22782 1.36981 1.40847 1.51158 1.57270 1.70754 1.83294 2.38496 2.81667 2.90599 3.01238 3.10380 3.26075 3.72816 3.77238 3.91797 3.94755 4.07369 4.08692 4.16780 4.18673 4.24243 4.26859 4.35720 4.40224 4.48170 4.55733 4.62695 4.70160 4.76769 4.85358 4.89307 4.96590 5.03662 5.06967 5.11247 5.19256 5.21781 5.26700 5.39864 5.60891 5.67084 5.99124 6.06156 6.35046 6.52543 6.67433 6.79688 6.92768 7.33812 7.37256 8.93264 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.002963 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.035638 B = 9449.061706 C =10555.435633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.521 3.479 4 O -0.519 6.519 5 C 0.083 3.917 6 C -0.132 4.132 7 C -0.042 4.042 8 C -0.151 4.151 9 C 0.338 3.662 10 N -0.652 5.652 11 C 0.503 3.497 12 O -0.488 6.488 13 C 0.049 3.951 14 N -0.534 5.534 15 C 0.176 3.824 16 C -0.511 4.511 17 H 0.033 0.967 18 C 0.010 3.990 19 N -0.950 5.950 20 Si 0.942 3.058 21 H -0.262 1.262 22 H -0.288 1.288 23 H -0.246 1.246 24 C 0.092 3.908 25 C -0.160 4.160 26 C -0.181 4.181 27 C -0.159 4.159 28 N -0.479 5.479 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.163 0.837 33 H 0.199 0.801 34 H 0.191 0.809 35 H 0.438 0.562 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.038 0.962 39 H -0.003 1.003 40 H 0.265 0.735 41 H 0.077 0.923 42 H 0.032 0.968 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.102 0.898 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 19.113 -13.474 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.365 3.635 4 O -0.409 6.409 5 C -0.053 4.053 6 C -0.154 4.154 7 C -0.067 4.067 8 C -0.174 4.174 9 C 0.104 3.896 10 N -0.302 5.302 11 C 0.289 3.711 12 O -0.357 6.357 13 C -0.082 4.082 14 N -0.258 5.258 15 C 0.050 3.950 16 C -0.549 4.549 17 H 0.051 0.949 18 C -0.187 4.187 19 N -0.591 5.591 20 Si 0.765 3.235 21 H -0.187 1.187 22 H -0.214 1.214 23 H -0.170 1.170 24 C -0.035 4.035 25 C -0.178 4.178 26 C -0.218 4.218 27 C -0.196 4.196 28 N -0.197 5.197 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.088 0.912 32 H 0.181 0.819 33 H 0.217 0.783 34 H 0.208 0.792 35 H 0.279 0.721 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.056 0.944 39 H 0.014 0.986 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.111 0.889 46 H 0.120 0.880 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.743 18.396 -13.161 22.686 hybrid contribution 1.146 -0.443 -0.004 1.228 sum -0.597 17.953 -13.165 22.271 Atomic orbital electron populations 1.23599 0.74502 1.05453 1.03034 1.86804 1.25076 1.31916 1.82606 1.21229 0.88766 0.81531 0.71971 1.90784 1.66392 1.36312 1.47364 1.19972 0.90217 0.90446 1.04636 1.22278 0.97003 0.96944 0.99166 1.21942 0.91725 1.00292 0.92779 1.22311 1.03810 0.89705 1.01577 1.18874 0.87744 0.87398 0.95609 1.43577 1.11802 1.02805 1.72048 1.21216 0.88344 0.85512 0.76026 1.90789 1.15513 1.86622 1.42741 1.21881 0.94006 0.87853 1.04488 1.61429 1.35804 1.03038 1.25541 1.19973 0.92358 0.88077 0.94604 1.21259 1.40960 1.00980 0.91704 0.94857 1.25793 0.95502 1.01221 0.96184 1.70059 1.48199 1.28659 1.12165 0.85789 0.79713 0.78202 0.79747 1.18717 1.21351 1.16998 1.21698 0.94820 0.98798 0.88212 1.22121 1.01422 0.99443 0.94841 1.23097 1.01407 0.93983 1.03337 1.22972 0.97529 1.01639 0.97471 1.67364 1.07701 1.31218 1.13415 0.90903 0.86267 0.91219 0.81947 0.78347 0.79179 0.72127 0.87878 0.89637 0.94409 0.98565 0.92587 0.90451 0.94968 0.89918 0.88384 0.88931 0.87993 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.82 16 2 O -0.35 -11.57 10.38 -55.96 -0.58 -12.15 16 3 C 0.52 16.25 7.95 70.43 0.56 16.81 16 4 O -0.52 -16.05 16.10 20.06 0.32 -15.72 16 5 C 0.08 2.37 6.74 41.84 0.28 2.65 16 6 C -0.13 -2.43 9.63 22.63 0.22 -2.21 16 7 C -0.04 -0.46 10.16 22.42 0.23 -0.23 16 8 C -0.15 -1.96 9.94 22.57 0.22 -1.73 16 9 C 0.34 8.22 7.41 133.10 0.99 9.21 16 10 N -0.65 -15.30 5.39 -308.42 -1.66 -16.97 16 11 C 0.50 16.87 7.43 87.66 0.65 17.53 16 12 O -0.49 -20.66 12.67 -3.00 -0.04 -20.70 16 13 C 0.05 1.68 5.28 85.56 0.45 2.14 16 14 N -0.53 -22.51 4.18 -905.36 -3.78 -26.29 16 15 C 0.18 8.24 3.71 85.55 0.32 8.55 16 16 C -0.51 -29.12 9.16 25.60 0.23 -28.88 16 17 H 0.03 2.15 7.89 -2.91 -0.02 2.13 16 18 C 0.01 0.58 5.47 84.66 0.46 1.04 16 19 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 20 Si 0.94 43.12 27.56 68.60 1.89 45.01 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.25 -10.51 6.41 99.48 0.64 -9.87 16 24 C 0.09 3.36 4.88 86.30 0.42 3.78 16 25 C -0.16 -5.67 4.56 -10.80 -0.05 -5.72 16 26 C -0.18 -5.35 9.93 30.59 0.30 -5.05 16 27 C -0.16 -4.35 10.25 30.59 0.31 -4.04 16 28 N -0.48 -15.55 7.68 -182.19 -1.40 -16.95 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.16 2.47 7.63 -2.91 -0.02 2.44 16 33 H 0.20 0.22 8.06 -2.91 -0.02 0.19 16 34 H 0.19 0.69 8.06 -2.91 -0.02 0.66 16 35 H 0.44 6.02 8.70 -92.71 -0.81 5.21 16 36 H 0.10 3.84 7.31 -2.39 -0.02 3.83 16 37 H 0.09 2.33 8.12 -2.38 -0.02 2.31 16 38 H 0.04 1.80 5.27 -2.39 -0.01 1.79 16 39 H 0.00 -0.14 7.66 -2.38 -0.02 -0.16 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.08 2.94 5.79 -2.39 -0.01 2.92 16 42 H 0.03 1.06 7.87 -2.39 -0.02 1.04 16 43 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 44 H 0.10 2.68 8.03 -2.38 -0.02 2.66 16 45 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.10 2.50 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -85.83 397.30 1.98 -83.85 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.13 Total: 23.04 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 6.80 Total: 15.66 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -6.54 Total: -118.99 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -0.30 Total: -48.58 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.89 Total: 45.01 kcal Total: -85.83 1.98 -83.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346431294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.518 kcal (2) G-P(sol) polarization free energy of solvation -85.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds