Wall clock time and date at job start Wed Apr 1 2020 04:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42900 * 114.00158 * 2 1 4 4 C 1.50700 * 109.47133 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00466 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99798 * 179.97438 * 4 3 2 7 7 C 1.46532 * 124.98229 * 359.97438 * 6 4 3 8 8 C 1.53746 * 105.18556 * 180.02562 * 7 6 4 9 9 C 1.51208 * 104.56811 * 0.02562 * 8 7 6 10 10 C 1.38473 * 108.59021 * 359.97438 * 9 8 7 11 11 C 1.39653 * 119.08376 * 180.02562 * 10 9 8 12 12 C 1.37920 * 120.43245 * 359.97438 * 11 10 9 13 13 C 1.38133 * 120.30410 * 359.83229 * 12 11 10 14 14 C 1.38765 * 130.97971 * 180.02562 * 9 8 7 15 15 N 1.39941 * 119.99612 * 359.95696 * 14 9 8 16 16 C 1.34775 * 119.99575 * 214.92608 * 15 14 9 17 17 O 1.21589 * 120.00309 * 355.81886 * 16 15 14 18 18 N 1.34779 * 119.99943 * 175.82053 * 16 15 14 19 19 C 1.46504 * 120.00229 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.47122 * 180.02562 * 19 18 16 21 21 C 1.50699 * 109.46816 * 180.02562 * 20 19 18 22 22 H 1.07996 * 120.00272 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99694 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00310 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99901 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47143 * 59.99916 * 25 23 21 27 27 H 1.48506 * 109.47072 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46869 * 299.99756 * 25 23 21 29 29 H 1.08997 * 109.47610 * 59.99670 * 1 2 3 30 30 H 1.09001 * 109.47315 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47238 * 299.99998 * 1 2 3 32 32 H 1.09003 * 109.47188 * 60.00217 * 3 2 1 33 33 H 1.08995 * 109.47174 * 300.00107 * 3 2 1 34 34 H 1.08999 * 110.30075 * 298.94554 * 7 6 4 35 35 H 1.09001 * 110.30114 * 60.99521 * 7 6 4 36 36 H 1.08995 * 110.41768 * 241.22509 * 8 7 6 37 37 H 1.09007 * 110.41320 * 118.77263 * 8 7 6 38 38 H 1.08000 * 119.78062 * 180.02562 * 11 10 9 39 39 H 1.08002 * 119.85043 * 180.02562 * 12 11 10 40 40 H 1.07995 * 120.12990 * 180.21331 * 13 12 11 41 41 H 0.97004 * 120.00349 * 35.20851 * 15 14 9 42 42 H 0.96999 * 119.99740 * 0.02562 * 18 16 15 43 43 H 1.09010 * 109.46841 * 299.99819 * 19 18 16 44 44 H 1.08995 * 109.46803 * 59.99769 * 19 18 16 45 45 H 1.08997 * 109.46855 * 299.99832 * 20 19 18 46 46 H 1.08995 * 109.47625 * 60.00083 * 20 19 18 47 47 H 0.96999 * 120.00274 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2764 2.2968 0.0002 7 6 3.7635 3.6694 -0.0014 8 6 5.0124 4.5660 -0.0019 9 6 6.1749 3.5990 -0.0012 10 6 5.6749 2.3077 0.0003 11 6 6.5679 1.2340 0.0017 12 6 7.9289 1.4573 0.0012 13 6 8.4236 2.7470 -0.0043 14 6 7.5444 3.8224 -0.0008 15 7 8.0398 5.1312 -0.0019 16 6 9.1737 5.4218 -0.6700 17 8 9.8070 4.5341 -1.2078 18 7 9.6056 6.6965 -0.7418 19 6 10.8379 7.0126 -1.4685 20 6 11.1004 8.5181 -1.3966 21 6 12.3676 8.8433 -2.1446 22 1 12.9297 8.0550 -2.6230 23 6 12.8093 10.1473 -2.2181 24 7 12.1246 11.1074 -1.6360 25 14 14.3805 10.5503 -3.1447 26 1 14.2371 10.1395 -4.5645 27 1 14.6353 12.0117 -3.0750 28 1 15.5185 9.8202 -2.5306 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.1683 3.8497 -0.8965 35 1 3.1661 3.8509 0.8921 36 1 5.0343 5.1881 0.8928 37 1 5.0348 5.1863 -0.8980 38 1 6.1902 0.2222 0.0024 39 1 8.6110 0.6199 0.0019 40 1 9.4898 2.9185 -0.0082 41 1 7.5694 5.8283 0.4814 42 1 9.1006 7.4046 -0.3124 43 1 11.6732 6.4765 -1.0177 44 1 10.7326 6.7111 -2.5106 45 1 10.2652 9.0545 -1.8470 46 1 11.2058 8.8193 -0.3544 47 1 12.4352 12.0249 -1.6881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350826952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:09 Heat of formation + Delta-G solvation = -69.591022 kcal Electronic energy + Delta-G solvation = -29217.706468 eV Core-core repulsion = 24980.008901 eV Total energy + Delta-G solvation = -4237.697568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55738 -40.20856 -39.04847 -37.77869 -36.71779 -35.05742 -34.53653 -32.90097 -32.24620 -30.51228 -29.69622 -28.92723 -28.21052 -26.43384 -24.86973 -23.84336 -23.24183 -21.66312 -21.36517 -20.82204 -19.74428 -18.44165 -17.96044 -17.19532 -17.00647 -16.84594 -16.37097 -16.12521 -15.75154 -15.69209 -15.36031 -15.08105 -14.61144 -14.54350 -14.46252 -14.30740 -13.70796 -13.65526 -13.32901 -13.01259 -12.95087 -12.77930 -12.71329 -12.30852 -12.26695 -12.06323 -11.90654 -11.44183 -11.24391 -11.07096 -10.75298 -10.67970 -10.38869 -10.36122 -10.25711 -10.10102 -9.80676 -9.59640 -9.31415 -8.65758 -8.43458 -8.22350 -7.83966 -6.12268 -4.15163 1.12597 1.26481 2.04838 2.22221 2.81851 3.28209 3.29914 3.33762 3.34144 3.37439 3.77560 3.87636 4.08588 4.31814 4.35245 4.42014 4.44314 4.50405 4.63319 4.76346 4.81750 4.89522 4.95782 5.07763 5.14440 5.25053 5.31661 5.38621 5.41182 5.52314 5.53742 5.94462 6.13502 6.18924 6.31241 6.32938 6.38100 6.50492 6.57867 6.70490 6.85719 6.95519 7.03878 7.08150 7.50349 7.57565 7.60302 7.86112 8.15199 8.28081 8.77079 8.90775 9.49864 10.99241 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.001659 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.322840 B =16874.607382 C =17559.099967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.050 3.950 4 C 0.522 3.478 5 O -0.494 6.494 6 N -0.553 5.553 7 C 0.100 3.900 8 C -0.080 4.080 9 C -0.172 4.172 10 C 0.158 3.842 11 C -0.149 4.149 12 C -0.076 4.076 13 C -0.137 4.137 14 C 0.215 3.785 15 N -0.691 5.691 16 C 0.697 3.303 17 O -0.577 6.577 18 N -0.732 5.732 19 C 0.139 3.861 20 C 0.013 3.987 21 C -0.523 4.523 22 H 0.060 0.940 23 C 0.060 3.940 24 N -0.894 5.894 25 Si 0.897 3.103 26 H -0.275 1.275 27 H -0.287 1.287 28 H -0.275 1.275 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.148 0.852 41 H 0.404 0.596 42 H 0.395 0.605 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.022 0.978 46 H 0.023 0.977 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.570 -15.206 7.204 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.030 4.030 4 C 0.310 3.690 5 O -0.366 6.366 6 N -0.279 5.279 7 C -0.022 4.022 8 C -0.117 4.117 9 C -0.178 4.178 10 C 0.064 3.936 11 C -0.170 4.170 12 C -0.095 4.095 13 C -0.158 4.158 14 C 0.119 3.881 15 N -0.338 5.338 16 C 0.398 3.602 17 O -0.454 6.454 18 N -0.385 5.385 19 C 0.016 3.984 20 C -0.024 4.024 21 C -0.561 4.561 22 H 0.078 0.922 23 C -0.142 4.142 24 N -0.533 5.533 25 Si 0.725 3.275 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.201 1.201 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.166 0.834 41 H 0.239 0.761 42 H 0.228 0.772 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.681 -16.584 6.685 30.477 hybrid contribution 0.015 1.443 -0.074 1.445 sum -24.666 -15.140 6.611 29.688 Atomic orbital electron populations 1.22870 0.79894 1.03612 1.00285 1.88016 1.20155 1.24842 1.95454 1.22169 0.90497 0.87342 1.02987 1.20180 0.88791 0.83155 0.76850 1.90727 1.74255 1.25688 1.45973 1.45738 1.04586 1.07060 1.70535 1.22206 0.97531 0.79487 1.03013 1.20977 0.89943 0.96761 1.04014 1.19513 0.92505 0.93938 1.11808 1.17908 0.82035 0.94024 0.99636 1.20888 0.92131 0.98502 1.05524 1.20856 0.94218 0.96828 0.97610 1.21354 1.01149 0.90854 1.02413 1.16697 0.89229 0.83962 0.98221 1.42659 1.27316 1.09193 1.54650 1.16046 0.80481 0.84216 0.79486 1.90905 1.57215 1.45921 1.51379 1.45581 1.29052 1.05782 1.58040 1.21677 0.82343 0.99674 0.94692 1.19326 0.97581 0.87548 0.97986 1.21001 1.08070 0.93178 1.33881 0.92226 1.24984 0.97363 0.96309 0.95537 1.69939 1.39116 1.00450 1.43803 0.86566 0.83382 0.77149 0.80405 1.20091 1.21246 1.20080 0.93608 0.88834 0.93624 0.89816 0.89785 0.89705 0.89688 0.89183 0.88974 0.84520 0.85087 0.83404 0.76068 0.77182 0.92478 0.92502 0.95929 0.95905 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.37 -3.31 10.24 -55.14 -0.56 -3.88 16 3 C 0.05 0.33 5.56 36.01 0.20 0.53 16 4 C 0.52 5.56 7.87 -10.98 -0.09 5.47 16 5 O -0.49 -7.33 14.66 -14.36 -0.21 -7.55 16 6 N -0.55 -5.32 3.13 -112.91 -0.35 -5.67 16 7 C 0.10 0.53 6.67 -3.64 -0.02 0.51 16 8 C -0.08 -0.53 6.85 -27.25 -0.19 -0.72 16 9 C -0.17 -1.89 6.18 -104.09 -0.64 -2.54 16 10 C 0.16 1.91 6.62 -83.58 -0.55 1.36 16 11 C -0.15 -1.95 9.45 -39.17 -0.37 -2.32 16 12 C -0.08 -0.96 10.01 -39.74 -0.40 -1.36 16 13 C -0.14 -1.94 8.70 -39.37 -0.34 -2.28 16 14 C 0.22 2.82 6.30 -83.71 -0.53 2.29 16 15 N -0.69 -8.59 5.29 -14.24 -0.08 -8.66 16 16 C 0.70 11.54 8.41 -86.92 -0.73 10.81 16 17 O -0.58 -11.69 13.76 5.29 0.07 -11.62 16 18 N -0.73 -12.07 5.56 -65.22 -0.36 -12.43 16 19 C 0.14 2.85 5.61 -4.04 -0.02 2.82 16 20 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 21 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 22 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 23 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 24 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 25 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 29 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.14 8.14 -51.92 -0.42 -0.29 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.14 1.88 6.27 -52.49 -0.33 1.55 16 39 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.15 2.35 6.21 -52.49 -0.33 2.03 16 41 H 0.40 3.61 8.81 -40.82 -0.36 3.25 16 42 H 0.39 5.43 8.49 -40.82 -0.35 5.08 16 43 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -36.33 395.41 -9.77 -46.10 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.82 Total: 3.53 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -3.13 Total: 3.03 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.05 Total: -51.64 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.70 Total: -23.04 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.33 -9.77 -46.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350826952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.494 kcal (2) G-P(sol) polarization free energy of solvation -36.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds