Wall clock time and date at job start Wed Apr 1 2020 04:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42900 * 114.00158 * 2 1 4 4 C 1.50700 * 109.47133 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00466 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99798 * 179.97438 * 4 3 2 7 7 C 1.46532 * 124.98229 * 359.97438 * 6 4 3 8 8 C 1.53746 * 105.18556 * 180.02562 * 7 6 4 9 9 C 1.51208 * 104.56811 * 0.02562 * 8 7 6 10 10 C 1.38473 * 108.59021 * 359.97438 * 9 8 7 11 11 C 1.39653 * 119.08376 * 180.02562 * 10 9 8 12 12 C 1.37920 * 120.43245 * 359.97438 * 11 10 9 13 13 C 1.38133 * 120.30410 * 359.83229 * 12 11 10 14 14 C 1.38765 * 130.97971 * 180.02562 * 9 8 7 15 15 N 1.39941 * 119.99612 * 359.95696 * 14 9 8 16 16 C 1.34775 * 119.99575 * 214.92608 * 15 14 9 17 17 O 1.21589 * 120.00309 * 355.81886 * 16 15 14 18 18 N 1.34779 * 119.99943 * 175.82053 * 16 15 14 19 19 C 1.46504 * 120.00229 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.47122 * 180.02562 * 19 18 16 21 21 C 1.50699 * 109.46816 * 180.02562 * 20 19 18 22 22 H 1.07996 * 120.00272 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99694 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00310 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99901 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47143 * 59.99916 * 25 23 21 27 27 H 1.48506 * 109.47072 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46869 * 299.99756 * 25 23 21 29 29 H 1.08997 * 109.47610 * 59.99670 * 1 2 3 30 30 H 1.09001 * 109.47315 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47238 * 299.99998 * 1 2 3 32 32 H 1.09003 * 109.47188 * 60.00217 * 3 2 1 33 33 H 1.08995 * 109.47174 * 300.00107 * 3 2 1 34 34 H 1.08999 * 110.30075 * 298.94554 * 7 6 4 35 35 H 1.09001 * 110.30114 * 60.99521 * 7 6 4 36 36 H 1.08995 * 110.41768 * 241.22509 * 8 7 6 37 37 H 1.09007 * 110.41320 * 118.77263 * 8 7 6 38 38 H 1.08000 * 119.78062 * 180.02562 * 11 10 9 39 39 H 1.08002 * 119.85043 * 180.02562 * 12 11 10 40 40 H 1.07995 * 120.12990 * 180.21331 * 13 12 11 41 41 H 0.97004 * 120.00349 * 35.20851 * 15 14 9 42 42 H 0.96999 * 119.99740 * 0.02562 * 18 16 15 43 43 H 1.09010 * 109.46841 * 299.99819 * 19 18 16 44 44 H 1.08995 * 109.46803 * 59.99769 * 19 18 16 45 45 H 1.08997 * 109.46855 * 299.99832 * 20 19 18 46 46 H 1.08995 * 109.47625 * 60.00083 * 20 19 18 47 47 H 0.96999 * 120.00274 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2764 2.2968 0.0002 7 6 3.7635 3.6694 -0.0014 8 6 5.0124 4.5660 -0.0019 9 6 6.1749 3.5990 -0.0012 10 6 5.6749 2.3077 0.0003 11 6 6.5679 1.2340 0.0017 12 6 7.9289 1.4573 0.0012 13 6 8.4236 2.7470 -0.0043 14 6 7.5444 3.8224 -0.0008 15 7 8.0398 5.1312 -0.0019 16 6 9.1737 5.4218 -0.6700 17 8 9.8070 4.5341 -1.2078 18 7 9.6056 6.6965 -0.7418 19 6 10.8379 7.0126 -1.4685 20 6 11.1004 8.5181 -1.3966 21 6 12.3676 8.8433 -2.1446 22 1 12.9297 8.0550 -2.6230 23 6 12.8093 10.1473 -2.2181 24 7 12.1246 11.1074 -1.6360 25 14 14.3805 10.5503 -3.1447 26 1 14.2371 10.1395 -4.5645 27 1 14.6353 12.0117 -3.0750 28 1 15.5185 9.8202 -2.5306 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.1683 3.8497 -0.8965 35 1 3.1661 3.8509 0.8921 36 1 5.0343 5.1881 0.8928 37 1 5.0348 5.1863 -0.8980 38 1 6.1902 0.2222 0.0024 39 1 8.6110 0.6199 0.0019 40 1 9.4898 2.9185 -0.0082 41 1 7.5694 5.8283 0.4814 42 1 9.1006 7.4046 -0.3124 43 1 11.6732 6.4765 -1.0177 44 1 10.7326 6.7111 -2.5106 45 1 10.2652 9.0545 -1.8470 46 1 11.2058 8.8193 -0.3544 47 1 12.4352 12.0249 -1.6881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350826952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:08 Heat of formation + Delta-G solvation = -94.803011 kcal Electronic energy + Delta-G solvation = -29218.799742 eV Core-core repulsion = 24980.008901 eV Total energy + Delta-G solvation = -4238.790842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.39042 -41.35777 -39.91980 -38.42666 -37.63189 -36.58103 -35.75992 -34.80577 -33.05947 -31.75880 -30.89675 -29.60995 -29.18080 -26.87356 -26.69486 -24.53488 -24.22934 -22.93021 -22.55844 -22.18646 -20.66196 -19.64073 -18.87409 -18.41922 -17.77468 -17.70177 -17.50877 -16.87585 -16.62992 -16.60959 -16.49364 -16.48609 -16.02784 -15.69365 -15.33780 -15.25406 -15.09607 -14.82735 -14.33726 -14.25925 -13.76519 -13.71295 -13.39501 -13.27446 -13.20391 -12.92633 -12.87617 -12.85260 -12.52764 -12.37725 -12.32376 -12.22993 -11.67003 -11.62953 -11.48620 -11.25155 -11.03228 -10.84256 -10.78920 -10.57968 -10.07555 -9.16305 -8.80962 -8.22290 -6.31971 0.18542 0.25001 1.36000 1.43841 1.44577 1.45471 1.53131 1.64926 2.05346 2.42565 2.77985 2.82749 3.12941 3.21676 3.33828 3.53373 3.68104 4.05409 4.11224 4.13623 4.17856 4.29342 4.35718 4.41370 4.47188 4.50110 4.53443 4.54811 4.58552 4.65021 4.88497 4.89015 4.98530 5.01400 5.09881 5.21310 5.26615 5.29475 5.44164 5.50142 5.57260 5.61956 5.80258 5.97198 5.97901 6.05362 6.18836 6.25709 6.80767 6.86356 7.00541 7.37129 7.47395 8.89104 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.001659 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.322840 B =16874.607382 C =17559.099967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.055 3.945 4 C 0.512 3.488 5 O -0.551 6.551 6 N -0.552 5.552 7 C 0.094 3.906 8 C -0.080 4.080 9 C -0.160 4.160 10 C 0.146 3.854 11 C -0.163 4.163 12 C -0.080 4.080 13 C -0.158 4.158 14 C 0.199 3.801 15 N -0.668 5.668 16 C 0.699 3.301 17 O -0.616 6.616 18 N -0.723 5.723 19 C 0.160 3.840 20 C 0.024 3.976 21 C -0.548 4.548 22 H 0.058 0.942 23 C 0.010 3.990 24 N -0.924 5.924 25 Si 0.962 3.038 26 H -0.270 1.270 27 H -0.281 1.281 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.142 0.858 40 H 0.125 0.875 41 H 0.424 0.576 42 H 0.410 0.590 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.012 0.988 46 H 0.011 0.989 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.181 -13.705 7.405 32.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.024 4.024 4 C 0.303 3.697 5 O -0.427 6.427 6 N -0.277 5.277 7 C -0.026 4.026 8 C -0.117 4.117 9 C -0.166 4.166 10 C 0.051 3.949 11 C -0.185 4.185 12 C -0.099 4.099 13 C -0.179 4.179 14 C 0.103 3.897 15 N -0.317 5.317 16 C 0.399 3.601 17 O -0.496 6.496 18 N -0.378 5.378 19 C 0.036 3.964 20 C -0.014 4.014 21 C -0.586 4.586 22 H 0.076 0.924 23 C -0.189 4.189 24 N -0.564 5.564 25 Si 0.786 3.214 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.195 1.195 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.143 0.857 41 H 0.263 0.737 42 H 0.247 0.753 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.030 0.970 46 H 0.029 0.971 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.372 -15.036 6.923 31.989 hybrid contribution 0.735 0.922 -0.105 1.184 sum -26.637 -14.114 6.818 30.907 Atomic orbital electron populations 1.23051 0.77822 1.04239 1.01930 1.87960 1.22491 1.26623 1.95858 1.22342 0.86994 0.87052 1.06007 1.21141 0.90681 0.82481 0.75422 1.90702 1.75513 1.27912 1.48620 1.45983 1.03389 1.08797 1.69500 1.22656 0.97336 0.76372 1.06267 1.21212 0.88189 0.96436 1.05868 1.19811 0.92578 0.94950 1.09284 1.18168 0.83709 0.94053 0.98989 1.20912 0.92578 0.98610 1.06381 1.20932 0.94522 0.96827 0.97580 1.21261 1.00370 0.92049 1.04225 1.16806 0.90179 0.83533 0.99199 1.42284 1.25945 1.09673 1.53777 1.16086 0.81123 0.83442 0.79406 1.90893 1.58691 1.46971 1.53081 1.45192 1.28126 1.06511 1.57944 1.21135 0.83725 0.97133 0.94454 1.19129 0.96162 0.89481 0.96607 1.21437 1.09332 0.93538 1.34316 0.92373 1.25806 1.00538 0.96201 0.96337 1.70035 1.40671 1.00806 1.44867 0.85553 0.79496 0.77100 0.79222 1.19461 1.20608 1.19491 0.91996 0.88935 0.91814 0.86317 0.86644 0.86917 0.86096 0.86416 0.87916 0.85842 0.84000 0.85686 0.73722 0.75348 0.93566 0.93617 0.97016 0.97065 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.41 -6.78 10.24 -129.95 -1.33 -8.11 16 3 C 0.05 0.55 5.56 71.24 0.40 0.95 16 4 C 0.51 10.23 7.87 87.66 0.69 10.92 16 5 O -0.55 -16.88 14.66 15.98 0.23 -16.65 16 6 N -0.55 -9.35 3.13 -629.52 -1.97 -11.32 16 7 C 0.09 0.56 6.67 86.62 0.58 1.14 16 8 C -0.08 -0.74 6.85 30.26 0.21 -0.53 16 9 C -0.16 -3.25 6.18 -19.52 -0.12 -3.37 16 10 C 0.15 3.43 6.62 38.26 0.25 3.68 16 11 C -0.16 -4.48 9.45 22.54 0.21 -4.27 16 12 C -0.08 -2.15 10.01 22.17 0.22 -1.93 16 13 C -0.16 -4.69 8.70 22.40 0.19 -4.50 16 14 C 0.20 5.11 6.30 38.13 0.24 5.35 16 15 N -0.67 -15.83 5.29 -317.23 -1.68 -17.50 16 16 C 0.70 23.00 8.41 179.05 1.51 24.51 16 17 O -0.62 -25.62 13.76 -4.00 -0.05 -25.68 16 18 N -0.72 -23.53 5.56 -478.52 -2.66 -26.19 16 19 C 0.16 6.63 5.61 86.38 0.48 7.11 16 20 C 0.02 1.15 5.09 29.85 0.15 1.30 16 21 C -0.55 -29.95 9.11 25.60 0.23 -29.72 16 22 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 23 C 0.01 0.56 5.46 84.66 0.46 1.02 16 24 N -0.92 -52.90 13.29 21.45 0.28 -52.62 16 25 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.12 3.70 6.27 -2.91 -0.02 3.68 16 39 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 40 H 0.13 4.28 6.21 -2.91 -0.02 4.27 16 41 H 0.42 6.52 8.81 -92.71 -0.82 5.71 16 42 H 0.41 10.77 8.49 -92.71 -0.79 9.98 16 43 H 0.05 2.01 8.14 -2.38 -0.02 2.00 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -83.16 395.41 1.22 -81.93 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -0.59 Total: 18.06 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 6.96 Total: 13.08 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -6.02 Total: -107.63 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -1.15 Total: -50.43 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -83.16 1.22 -81.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350826952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.868 kcal (2) G-P(sol) polarization free energy of solvation -83.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds