Wall clock time and date at job start Wed Apr 1 2020 05:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 S 1.81405 * 109.46901 * 294.99764 * 4 2 1 6 6 O 1.42101 * 110.54193 * 291.62561 * 5 4 2 7 7 O 1.42102 * 110.54136 * 68.37249 * 5 4 2 8 8 N 1.65593 * 104.44835 * 179.97438 * 5 4 2 9 9 C 1.46920 * 120.63465 * 269.71904 * 8 5 4 10 10 C 1.52762 * 109.01045 * 233.58794 * 9 8 5 11 11 C 1.53040 * 109.38052 * 305.58601 * 10 9 8 12 12 N 1.46505 * 109.44776 * 181.25560 * 11 10 9 13 13 C 1.34777 * 120.00008 * 84.93728 * 12 11 10 14 14 O 1.21580 * 120.00130 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99702 * 179.97438 * 13 12 11 16 16 C 1.46501 * 119.99535 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46634 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00402 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99712 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00025 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46923 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46889 * 119.99747 * 21 19 17 24 24 H 1.48497 * 109.47581 * 240.00051 * 21 19 17 25 25 C 1.53037 * 109.53826 * 61.24022 * 11 10 9 26 26 C 1.46934 * 120.62943 * 90.00017 * 8 5 4 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 35 35 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 36 36 H 1.09001 * 109.58646 * 353.42283 * 9 8 5 37 37 H 1.09005 * 109.58795 * 113.84502 * 9 8 5 38 38 H 1.09000 * 109.56722 * 185.55470 * 10 9 8 39 39 H 1.08994 * 109.36539 * 65.49692 * 10 9 8 40 40 H 1.09002 * 109.46134 * 301.21535 * 11 10 9 41 41 H 0.97006 * 120.00043 * 264.93612 * 12 11 10 42 42 H 0.96995 * 120.00083 * 0.02562 * 15 13 12 43 43 H 1.09004 * 109.47162 * 299.99960 * 16 15 13 44 44 H 1.08998 * 109.47344 * 60.00167 * 16 15 13 45 45 H 0.96998 * 120.00269 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.49780 * 178.67887 * 25 11 10 47 47 H 1.08995 * 109.49893 * 58.59041 * 25 11 10 48 48 H 1.08992 * 109.58791 * 246.15762 * 26 8 5 49 49 H 1.09002 * 109.58209 * 6.43861 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 1.5602 -2.4691 -1.1767 6 8 2.2660 -3.1373 -0.1400 7 8 0.1520 -2.6055 -1.3100 8 7 2.1672 -3.1225 -2.5719 9 6 1.3589 -3.1517 -3.7984 10 6 1.3073 -4.5842 -4.3264 11 6 2.7329 -5.1132 -4.5000 12 7 2.6856 -6.4763 -5.0347 13 6 2.5864 -6.6758 -6.3639 14 8 2.5365 -5.7245 -7.1193 15 7 2.5434 -7.9299 -6.8557 16 6 2.4361 -8.1467 -8.3007 17 6 2.4065 -9.6262 -8.5857 18 1 2.4625 -10.3342 -7.7721 19 6 2.3090 -10.0760 -9.8854 20 7 2.2413 -9.2139 -10.8763 21 14 2.2731 -11.9099 -10.2389 22 1 2.3617 -12.6620 -8.9615 23 1 1.0048 -12.2561 -10.9296 24 1 3.4233 -12.2696 -11.1064 25 6 3.4443 -5.1212 -3.1451 26 6 3.5222 -3.6898 -2.6052 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6054 -0.2617 -2.1370 35 1 3.1263 -0.6442 -1.2952 36 1 0.3481 -2.8083 -3.5782 37 1 1.8114 -2.5043 -4.5497 38 1 0.7936 -4.6007 -5.2877 39 1 0.7703 -5.2123 -3.6156 40 1 3.2770 -4.4704 -5.1921 41 1 2.7258 -7.2354 -4.4320 42 1 2.5836 -8.6889 -6.2531 43 1 1.5191 -7.6875 -8.6698 44 1 3.2942 -7.6971 -8.8003 45 1 2.1724 -9.5304 -11.7907 46 1 4.4516 -5.5200 -3.2654 47 1 2.8872 -5.7442 -2.4454 48 1 4.1546 -3.0872 -3.2571 49 1 3.9393 -3.6990 -1.5982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426427717.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:19 Heat of formation + Delta-G solvation = -118.533154 kcal Electronic energy + Delta-G solvation = -28944.046658 eV Core-core repulsion = 24839.670751 eV Total energy + Delta-G solvation = -4104.375906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.71136 -38.20552 -37.52554 -36.91087 -36.19656 -34.62306 -33.94162 -32.33833 -31.34961 -30.60109 -28.36401 -27.71155 -27.04619 -24.31214 -23.63584 -22.41553 -21.16184 -20.67663 -20.10366 -19.11828 -18.24879 -17.89803 -17.00407 -16.50278 -16.10984 -15.81967 -15.50957 -14.85761 -14.79503 -14.76533 -14.60357 -14.56732 -13.90779 -13.83264 -13.70165 -13.60652 -13.05562 -13.02820 -12.75751 -12.70120 -12.62056 -12.48455 -12.19821 -11.95768 -11.95154 -11.89525 -11.60621 -11.59594 -11.41859 -11.40305 -11.03337 -10.92356 -10.87393 -10.85605 -10.57554 -10.29017 -9.50740 -9.34069 -9.24931 -8.76346 -8.66874 -7.74513 -6.14491 -4.20736 -0.13031 2.26268 3.24844 3.29487 3.33352 3.38241 3.47626 3.72367 3.91664 3.95454 4.18611 4.31371 4.34511 4.40372 4.66783 4.72183 4.82377 4.88998 4.94809 5.02643 5.04761 5.10948 5.12975 5.17008 5.21793 5.30105 5.33752 5.39256 5.47189 5.53211 5.54911 5.64066 5.66544 5.76114 5.77973 5.94318 6.01258 6.23914 6.35901 6.91313 7.14742 7.53664 7.57482 7.58657 7.92773 8.06339 8.78492 8.96783 9.35381 9.49962 10.95791 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035398 B = 0.001790 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.804663 B =15636.280786 C =15754.950941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.627 4.627 5 S 2.605 3.395 6 O -0.956 6.956 7 O -0.949 6.949 8 N -1.001 6.001 9 C 0.121 3.879 10 C -0.143 4.143 11 C 0.168 3.832 12 N -0.754 5.754 13 C 0.694 3.306 14 O -0.602 6.602 15 N -0.730 5.730 16 C 0.267 3.733 17 C -0.541 4.541 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.886 5.886 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.139 4.139 26 C 0.122 3.878 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.391 0.609 42 H 0.386 0.614 43 H 0.024 0.976 44 H 0.024 0.976 45 H 0.265 0.735 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 19.451 23.890 30.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.105 4.105 3 C -0.199 4.199 4 C -0.756 4.756 5 S 2.700 3.300 6 O -0.946 6.946 7 O -0.939 6.939 8 N -0.839 5.839 9 C -0.005 4.005 10 C -0.184 4.184 11 C 0.062 3.938 12 N -0.410 5.410 13 C 0.393 3.607 14 O -0.481 6.481 15 N -0.382 5.382 16 C 0.146 3.854 17 C -0.580 4.580 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.179 4.179 26 C -0.004 4.004 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.224 0.776 42 H 0.218 0.782 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.616 19.857 23.556 30.815 hybrid contribution 0.370 -1.170 -0.211 1.245 sum 0.986 18.687 23.345 29.919 Atomic orbital electron populations 1.22328 0.93805 1.04315 1.03487 1.20853 0.96736 0.98076 0.94814 1.21796 1.01229 0.94359 1.02470 1.30783 1.12069 1.25508 1.07286 1.05177 0.74534 0.77066 0.73228 1.93587 1.74782 1.71139 1.55079 1.93587 1.29329 1.85713 1.85304 1.57746 1.25016 1.73736 1.27451 1.21416 0.95511 0.98273 0.85279 1.22228 0.98248 0.95475 1.02425 1.20575 0.95420 0.83838 0.93952 1.45246 1.81739 1.07834 1.06225 1.16160 0.78245 0.84682 0.81590 1.90856 1.58779 1.41119 1.57331 1.45732 1.76841 1.04377 1.11251 1.18972 0.97420 0.96142 0.72894 1.21276 1.52575 0.91222 0.92883 0.91909 1.24949 0.94805 0.98411 0.95905 1.69987 1.48850 1.33961 0.99512 0.86359 0.77715 0.84410 0.78378 1.19682 1.20831 1.20835 1.22140 1.01964 0.96978 0.96771 1.21435 0.82123 0.94073 1.02766 0.91352 0.90699 0.91182 0.89855 0.92123 0.91901 0.92242 0.84798 0.84968 0.88623 0.90888 0.89571 0.91347 0.89356 0.77602 0.78186 0.95772 0.95783 0.92543 0.89829 0.90787 0.90853 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 8.88 37.16 0.33 -0.85 16 2 C -0.08 -0.50 2.92 -90.62 -0.26 -0.76 16 3 C -0.14 -0.64 9.19 37.16 0.34 -0.30 16 4 C -0.63 -3.41 5.62 37.16 0.21 -3.20 16 5 S 2.61 23.03 5.11 -107.50 -0.55 22.48 16 6 O -0.96 -11.04 16.59 -57.54 -0.95 -12.00 16 7 O -0.95 -10.96 14.33 -57.54 -0.82 -11.79 16 8 N -1.00 -8.47 3.23 -113.77 -0.37 -8.84 16 9 C 0.12 1.12 6.40 -3.94 -0.03 1.09 16 10 C -0.14 -1.71 5.63 -26.83 -0.15 -1.86 16 11 C 0.17 2.07 2.42 -67.89 -0.16 1.91 16 12 N -0.75 -10.92 5.08 -58.63 -0.30 -11.22 16 13 C 0.69 14.01 8.53 -86.92 -0.74 13.27 16 14 O -0.60 -14.59 16.00 5.30 0.08 -14.51 16 15 N -0.73 -15.56 5.55 -66.41 -0.37 -15.93 16 16 C 0.27 7.15 5.43 -5.19 -0.03 7.12 16 17 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 18 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 21 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.14 -1.26 5.55 -26.61 -0.15 -1.41 16 26 C 0.12 0.93 6.43 -3.71 -0.02 0.91 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.60 5.61 -51.93 -0.29 0.31 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.84 6.85 -51.93 -0.36 0.49 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 41 H 0.39 4.60 8.62 -40.82 -0.35 4.24 16 42 H 0.39 7.06 8.33 -40.82 -0.34 6.72 16 43 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.66 6.86 -51.93 -0.36 0.31 16 LS Contribution 401.80 15.07 6.06 6.06 Total: -1.00 -36.55 401.80 -10.98 -47.52 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.39 Total: 5.27 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -1.08 Total: 2.47 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.30 Total: -61.43 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.69 Total: -38.29 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 23.03 SS G_CDS: -0.55 Total: 22.48 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.55 -10.98 -47.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426427717.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.010 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds