Wall clock time and date at job start Wed Apr 1 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 S 1.81405 * 109.46901 * 294.99764 * 4 2 1 6 6 O 1.42101 * 110.54193 * 291.62561 * 5 4 2 7 7 O 1.42102 * 110.54136 * 68.37249 * 5 4 2 8 8 N 1.65593 * 104.44835 * 179.97438 * 5 4 2 9 9 C 1.46920 * 120.63465 * 269.71904 * 8 5 4 10 10 C 1.52762 * 109.01045 * 233.58794 * 9 8 5 11 11 C 1.53040 * 109.38052 * 305.58601 * 10 9 8 12 12 N 1.46505 * 109.44776 * 181.25560 * 11 10 9 13 13 C 1.34777 * 120.00008 * 84.93728 * 12 11 10 14 14 O 1.21580 * 120.00130 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99702 * 179.97438 * 13 12 11 16 16 C 1.46501 * 119.99535 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46634 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00402 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99712 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00025 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46923 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46889 * 119.99747 * 21 19 17 24 24 H 1.48497 * 109.47581 * 240.00051 * 21 19 17 25 25 C 1.53037 * 109.53826 * 61.24022 * 11 10 9 26 26 C 1.46934 * 120.62943 * 90.00017 * 8 5 4 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 35 35 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 36 36 H 1.09001 * 109.58646 * 353.42283 * 9 8 5 37 37 H 1.09005 * 109.58795 * 113.84502 * 9 8 5 38 38 H 1.09000 * 109.56722 * 185.55470 * 10 9 8 39 39 H 1.08994 * 109.36539 * 65.49692 * 10 9 8 40 40 H 1.09002 * 109.46134 * 301.21535 * 11 10 9 41 41 H 0.97006 * 120.00043 * 264.93612 * 12 11 10 42 42 H 0.96995 * 120.00083 * 0.02562 * 15 13 12 43 43 H 1.09004 * 109.47162 * 299.99960 * 16 15 13 44 44 H 1.08998 * 109.47344 * 60.00167 * 16 15 13 45 45 H 0.96998 * 120.00269 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.49780 * 178.67887 * 25 11 10 47 47 H 1.08995 * 109.49893 * 58.59041 * 25 11 10 48 48 H 1.08992 * 109.58791 * 246.15762 * 26 8 5 49 49 H 1.09002 * 109.58209 * 6.43861 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 1.5602 -2.4691 -1.1767 6 8 2.2660 -3.1373 -0.1400 7 8 0.1520 -2.6055 -1.3100 8 7 2.1672 -3.1225 -2.5719 9 6 1.3589 -3.1517 -3.7984 10 6 1.3073 -4.5842 -4.3264 11 6 2.7329 -5.1132 -4.5000 12 7 2.6856 -6.4763 -5.0347 13 6 2.5864 -6.6758 -6.3639 14 8 2.5365 -5.7245 -7.1193 15 7 2.5434 -7.9299 -6.8557 16 6 2.4361 -8.1467 -8.3007 17 6 2.4065 -9.6262 -8.5857 18 1 2.4625 -10.3342 -7.7721 19 6 2.3090 -10.0760 -9.8854 20 7 2.2413 -9.2139 -10.8763 21 14 2.2731 -11.9099 -10.2389 22 1 2.3617 -12.6620 -8.9615 23 1 1.0048 -12.2561 -10.9296 24 1 3.4233 -12.2696 -11.1064 25 6 3.4443 -5.1212 -3.1451 26 6 3.5222 -3.6898 -2.6052 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6054 -0.2617 -2.1370 35 1 3.1263 -0.6442 -1.2952 36 1 0.3481 -2.8083 -3.5782 37 1 1.8114 -2.5043 -4.5497 38 1 0.7936 -4.6007 -5.2877 39 1 0.7703 -5.2123 -3.6156 40 1 3.2770 -4.4704 -5.1921 41 1 2.7258 -7.2354 -4.4320 42 1 2.5836 -8.6889 -6.2531 43 1 1.5191 -7.6875 -8.6698 44 1 3.2942 -7.6971 -8.8003 45 1 2.1724 -9.5304 -11.7907 46 1 4.4516 -5.5200 -3.2654 47 1 2.8872 -5.7442 -2.4454 48 1 4.1546 -3.0872 -3.2571 49 1 3.9393 -3.6990 -1.5982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426427717.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:18 Heat of formation + Delta-G solvation = -147.118866 kcal Electronic energy + Delta-G solvation = -28945.286227 eV Core-core repulsion = 24839.670751 eV Total energy + Delta-G solvation = -4105.615476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.09906 -39.32583 -38.28616 -37.39991 -36.92283 -36.20475 -35.53040 -34.32632 -32.11618 -31.79145 -29.06626 -28.77536 -28.11044 -25.50834 -24.44281 -24.19766 -21.82298 -21.70417 -21.43653 -19.99056 -19.55074 -18.89870 -17.96023 -17.62410 -17.38346 -17.17480 -16.53718 -16.32505 -16.03565 -15.53054 -15.47252 -15.38397 -15.11965 -15.00548 -14.81326 -14.34388 -14.21910 -14.00994 -13.95614 -13.53939 -13.52434 -13.44620 -13.16842 -13.06166 -12.95204 -12.85396 -12.75414 -12.58437 -12.41788 -12.21143 -12.17042 -12.05756 -11.89971 -11.80744 -11.64894 -11.43281 -11.30789 -11.17131 -10.80253 -10.20145 -10.01876 -9.55963 -8.27721 -6.43730 -0.77827 1.43958 1.45260 1.58376 1.60035 1.92406 2.29243 2.40229 2.85133 3.07321 3.10556 3.42276 3.53143 3.66192 3.72490 3.85597 3.96301 3.99513 4.12903 4.22937 4.32154 4.40102 4.50716 4.57458 4.63859 4.73532 4.78409 4.78507 4.81964 4.85417 4.93486 4.98418 5.08312 5.12587 5.16208 5.18591 5.28089 5.29677 5.31165 5.35142 5.51368 5.59073 5.63912 5.72112 5.87239 6.30680 6.68570 7.25843 7.35173 7.77129 8.84756 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035398 B = 0.001790 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.804663 B =15636.280786 C =15754.950941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.605 4.605 5 S 2.603 3.397 6 O -0.988 6.988 7 O -0.985 6.985 8 N -1.001 6.001 9 C 0.125 3.875 10 C -0.143 4.143 11 C 0.164 3.836 12 N -0.731 5.731 13 C 0.692 3.308 14 O -0.645 6.645 15 N -0.726 5.726 16 C 0.286 3.714 17 C -0.555 4.555 18 H 0.082 0.918 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.986 3.014 22 H -0.255 1.255 23 H -0.279 1.279 24 H -0.278 1.278 25 C -0.133 4.133 26 C 0.117 3.883 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.408 0.592 42 H 0.403 0.597 43 H -0.015 1.015 44 H -0.014 1.014 45 H 0.269 0.731 46 H 0.099 0.901 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 19.588 25.660 32.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.113 4.113 3 C -0.198 4.198 4 C -0.738 4.738 5 S 2.703 3.297 6 O -0.978 6.978 7 O -0.975 6.975 8 N -0.839 5.839 9 C -0.001 4.001 10 C -0.184 4.184 11 C 0.059 3.941 12 N -0.388 5.388 13 C 0.392 3.608 14 O -0.528 6.528 15 N -0.380 5.380 16 C 0.163 3.837 17 C -0.592 4.592 18 H 0.100 0.900 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.809 3.191 22 H -0.178 1.178 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.172 4.172 26 C -0.008 4.008 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.244 0.756 42 H 0.238 0.762 43 H 0.003 0.997 44 H 0.004 0.996 45 H 0.077 0.923 46 H 0.117 0.883 47 H 0.093 0.907 48 H 0.115 0.885 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.768 19.942 25.425 32.361 hybrid contribution -0.003 -1.083 -0.694 1.287 sum 1.766 18.858 24.731 31.151 Atomic orbital electron populations 1.22395 0.94602 1.03253 1.04388 1.20970 0.96231 0.99172 0.94905 1.21809 1.01813 0.93114 1.03078 1.30603 1.13963 1.21034 1.08183 1.05058 0.73536 0.78536 0.72618 1.93541 1.74990 1.73087 1.56196 1.93543 1.31509 1.86900 1.85562 1.57620 1.25141 1.74479 1.26633 1.21347 0.96275 0.96462 0.85982 1.22176 0.97596 0.97618 1.00965 1.20810 0.95941 0.82019 0.95340 1.45086 1.79739 1.09785 1.04143 1.16310 0.77781 0.83570 0.83119 1.90824 1.60537 1.42314 1.59077 1.45332 1.77420 1.05709 1.09491 1.18390 0.93828 0.95949 0.75577 1.21642 1.52418 0.91397 0.93792 0.89964 1.26052 0.93935 1.04000 0.95598 1.70144 1.49782 1.36770 1.00170 0.85100 0.77672 0.77570 0.78767 1.17802 1.20510 1.20375 1.22130 1.02244 0.98525 0.94347 1.21625 0.82002 0.93245 1.03939 0.90744 0.92694 0.90168 0.89899 0.91608 0.91341 0.91331 0.82797 0.82229 0.88363 0.89219 0.92464 0.91686 0.90752 0.75605 0.76171 0.99735 0.99555 0.92255 0.88291 0.90738 0.88501 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 8.88 71.98 0.64 -1.58 16 2 C -0.09 -0.88 2.92 -10.79 -0.03 -0.91 16 3 C -0.14 -0.87 9.19 71.98 0.66 -0.20 16 4 C -0.61 -4.88 5.62 71.98 0.40 -4.47 16 5 S 2.60 42.98 5.11 -56.49 -0.29 42.69 16 6 O -0.99 -21.91 16.59 -127.65 -2.12 -24.03 16 7 O -0.98 -22.76 14.33 -127.65 -1.83 -24.59 16 8 N -1.00 -15.32 3.23 -513.84 -1.66 -16.98 16 9 C 0.13 2.22 6.40 86.22 0.55 2.77 16 10 C -0.14 -3.46 5.63 30.53 0.17 -3.28 16 11 C 0.16 3.95 2.42 45.02 0.11 4.06 16 12 N -0.73 -20.92 5.08 -457.68 -2.33 -23.24 16 13 C 0.69 28.62 8.53 179.05 1.53 30.14 16 14 O -0.64 -32.62 16.00 -3.97 -0.06 -32.69 16 15 N -0.73 -31.52 5.55 -482.29 -2.68 -34.19 16 16 C 0.29 15.97 5.43 85.63 0.46 16.43 16 17 C -0.55 -30.49 9.28 25.60 0.24 -30.25 16 18 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 19 C 0.00 0.21 5.46 84.66 0.46 0.67 16 20 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 21 Si 0.99 42.61 29.54 68.60 2.03 44.63 16 22 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 25 C -0.13 -2.17 5.55 30.67 0.17 -2.00 16 26 C 0.12 1.51 6.43 86.36 0.56 2.07 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.88 5.61 -2.39 -0.01 0.87 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.10 1.71 6.85 -2.39 -0.02 1.69 16 37 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16 41 H 0.41 9.05 8.62 -92.70 -0.80 8.25 16 42 H 0.40 14.52 8.33 -92.71 -0.77 13.75 16 43 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 44 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 45 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 46 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.11 1.21 6.86 -2.39 -0.02 1.19 16 Total: -1.00 -82.76 401.80 -3.34 -86.10 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.62 Total: 24.91 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 5.92 Total: 13.43 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -6.38 Total: -130.46 kcal Atomic # 8 Polarization: -77.29 SS G_CDS: -4.01 Total: -81.30 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 42.98 SS G_CDS: -0.29 Total: 42.69 kcal Total: -82.76 -3.34 -86.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426427717.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.018 kcal (2) G-P(sol) polarization free energy of solvation -82.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds