Wall clock time and date at job start Wed Apr 1 2020 04:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00432 * 2 1 4 4 C 1.52999 * 109.47741 * 179.97438 * 3 2 1 5 5 O 1.42908 * 109.46554 * 64.99794 * 4 3 2 6 6 C 1.42904 * 113.99284 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.52768 * 29.91842 * 6 5 4 8 8 C 1.53038 * 109.49711 * 269.83343 * 6 5 4 9 9 C 1.53079 * 109.65887 * 178.75200 * 8 6 5 10 10 C 1.53195 * 109.29317 * 61.15751 * 9 8 6 11 11 N 1.46926 * 108.89143 * 305.57843 * 10 9 8 12 12 S 1.65599 * 120.62998 * 233.51772 * 11 10 9 13 13 O 1.42097 * 104.27883 * 206.07261 * 12 11 10 14 14 O 1.42099 * 104.27698 * 333.92678 * 12 11 10 15 15 C 1.81397 * 104.45133 * 89.99776 * 12 11 10 16 16 C 1.53002 * 109.47014 * 174.02264 * 15 12 11 17 17 C 1.50693 * 115.54751 * 65.28152 * 16 15 12 18 18 H 1.08007 * 119.99903 * 268.53950 * 17 16 15 19 19 C 1.37880 * 120.00203 * 88.54881 * 17 16 15 20 20 N 1.31508 * 119.99992 * 174.69781 * 19 17 16 21 21 Si 1.86797 * 119.99735 * 354.69184 * 19 17 16 22 22 H 1.48504 * 109.47229 * 92.56092 * 21 19 17 23 23 H 1.48504 * 109.47024 * 212.55434 * 21 19 17 24 24 H 1.48495 * 109.47544 * 332.55607 * 21 19 17 25 25 C 1.53000 * 117.49661 * 279.60520 * 16 15 12 26 26 C 1.53005 * 117.49529 * 210.94600 * 16 15 12 27 27 C 1.46931 * 118.73939 * 53.53801 * 11 10 9 28 28 H 1.09003 * 109.46870 * 299.99649 * 1 2 3 29 29 H 1.08993 * 109.47276 * 59.99866 * 1 2 3 30 30 H 1.09007 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47149 * 59.99347 * 3 2 1 32 32 H 1.09001 * 109.46897 * 300.00080 * 3 2 1 33 33 H 1.08995 * 109.47090 * 305.00502 * 4 3 2 34 34 H 1.09002 * 109.47498 * 184.99503 * 4 3 2 35 35 H 1.08998 * 109.46563 * 298.71164 * 8 6 5 36 36 H 1.09004 * 109.45699 * 58.67130 * 8 6 5 37 37 H 1.08998 * 109.38793 * 301.27865 * 9 8 6 38 38 H 1.09000 * 109.61998 * 181.17196 * 9 8 6 39 39 H 1.08999 * 109.58085 * 185.71921 * 10 9 8 40 40 H 1.09002 * 109.58680 * 65.43494 * 10 9 8 41 41 H 1.08993 * 109.47342 * 294.02660 * 15 12 11 42 42 H 1.09004 * 109.46903 * 54.02886 * 15 12 11 43 43 H 0.97000 * 120.00198 * 179.97438 * 20 19 17 44 44 H 1.08993 * 117.50274 * 0.02562 * 25 16 15 45 45 H 1.09010 * 117.49485 * 145.02314 * 25 16 15 46 46 H 1.08994 * 117.49476 * 214.97674 * 26 16 15 47 47 H 1.08995 * 117.49934 * 0.02562 * 26 16 15 48 48 H 1.08997 * 109.58298 * 66.17700 * 27 11 10 49 49 H 1.09002 * 109.58302 * 186.46203 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5791 -1.2202 6 6 5.3822 0.4186 -1.3216 7 1 5.8056 0.2832 -0.3264 8 6 5.9920 1.6628 -1.9713 9 6 7.5127 1.5079 -2.0535 10 6 7.8515 0.2909 -2.9199 11 7 7.1506 -0.8842 -2.3846 12 16 7.9828 -2.2677 -2.0161 13 8 7.0161 -3.3017 -2.1403 14 8 9.1238 -2.2261 -2.8621 15 6 8.4685 -2.0554 -0.2813 16 6 9.1226 -3.3420 0.2262 17 6 10.4293 -3.7089 -0.4287 18 1 10.4364 -4.3506 -1.2975 19 6 11.6157 -3.2257 0.0812 20 7 12.7610 -3.6280 -0.4245 21 14 11.5960 -1.9996 1.4903 22 1 11.6882 -2.7276 2.7814 23 1 12.7517 -1.0763 1.3591 24 1 10.3328 -1.2200 1.4507 25 6 8.1980 -4.4857 0.6481 26 6 8.9552 -3.6824 1.7085 27 6 5.6972 -0.8086 -2.1827 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8508 0.5684 0.8426 34 1 3.9785 2.1765 0.0901 35 1 5.5866 1.7837 -2.9758 36 1 5.7483 2.5410 -1.3735 37 1 7.9165 1.3648 -1.0512 38 1 7.9483 2.4031 -2.4973 39 1 8.9271 0.1157 -2.8992 40 1 7.5305 0.4719 -3.9458 41 1 9.1772 -1.2312 -0.2007 42 1 7.5856 -1.8354 0.3189 43 1 13.5957 -3.2878 -0.0660 44 1 7.1238 -4.3217 0.5636 45 1 8.5350 -5.5037 0.4522 46 1 9.7900 -4.1721 2.2098 47 1 8.3788 -2.9899 2.3219 48 1 5.1987 -0.7158 -3.1475 49 1 5.3511 -1.7105 -1.6778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451503721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:58 Heat of formation + Delta-G solvation = -160.553640 kcal Electronic energy + Delta-G solvation = -30419.289532 eV Core-core repulsion = 26280.798729 eV Total energy + Delta-G solvation = -4138.490803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.25353 -38.88579 -38.83822 -38.11048 -37.50589 -36.85036 -34.30828 -33.14851 -32.02838 -30.15541 -30.12316 -27.64460 -27.11655 -25.58368 -24.00792 -23.40245 -23.36281 -21.78448 -20.96385 -19.80991 -18.85685 -18.50595 -17.85197 -17.50551 -17.30493 -17.00281 -16.80764 -16.43650 -16.29345 -15.85656 -15.64966 -15.53009 -15.38217 -14.84411 -14.73309 -14.59767 -14.28762 -14.05651 -13.94816 -13.91217 -13.23622 -13.10819 -13.09341 -12.99957 -12.88609 -12.69826 -12.51388 -12.41652 -12.27354 -12.11622 -12.07159 -11.94342 -11.75781 -11.71917 -11.69166 -11.59769 -10.98634 -10.74806 -10.61844 -10.53590 -10.29239 -9.86474 -8.32977 -6.46820 -0.66621 1.35414 1.36436 1.50232 1.75845 2.35222 2.66901 2.89449 2.91875 2.98508 3.13669 3.29510 3.57507 3.80887 3.82545 3.97919 4.03438 4.13540 4.17936 4.23389 4.26406 4.29960 4.31615 4.36350 4.46778 4.52339 4.54402 4.58191 4.61794 4.63706 4.76815 4.80803 4.83257 4.85502 4.89991 4.93721 5.00244 5.03306 5.14051 5.18547 5.20757 5.38688 5.42769 5.59004 5.61127 6.18467 6.22341 6.35218 6.64501 7.25874 8.83483 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.003385 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.816117 B = 8269.396847 C = 8758.536465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.059 3.941 4 C 0.055 3.945 5 O -0.390 6.390 6 C 0.077 3.923 7 H 0.075 0.925 8 C -0.130 4.130 9 C -0.129 4.129 10 C 0.105 3.895 11 N -0.997 5.997 12 S 2.613 3.387 13 O -0.989 6.989 14 O -0.988 6.988 15 C -0.569 4.569 16 C -0.031 4.031 17 C -0.516 4.516 18 H 0.026 0.974 19 C 0.025 3.975 20 N -0.942 5.942 21 Si 0.935 3.065 22 H -0.263 1.263 23 H -0.292 1.292 24 H -0.214 1.214 25 C -0.176 4.176 26 C -0.166 4.166 27 C 0.122 3.878 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.134 0.866 42 H 0.152 0.848 43 H 0.269 0.731 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.118 0.882 48 H 0.080 0.920 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.344 18.558 4.243 29.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.017 4.017 4 C -0.021 4.021 5 O -0.309 6.309 6 C 0.017 3.983 7 H 0.093 0.907 8 C -0.168 4.168 9 C -0.168 4.168 10 C -0.020 4.020 11 N -0.836 5.836 12 S 2.712 3.288 13 O -0.980 6.980 14 O -0.978 6.978 15 C -0.702 4.702 16 C -0.034 4.034 17 C -0.553 4.553 18 H 0.045 0.955 19 C -0.174 4.174 20 N -0.579 5.579 21 Si 0.757 3.243 22 H -0.188 1.188 23 H -0.219 1.219 24 H -0.136 1.136 25 C -0.213 4.213 26 C -0.204 4.204 27 C -0.004 4.004 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.152 0.848 42 H 0.170 0.830 43 H 0.078 0.922 44 H 0.128 0.872 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.137 0.863 48 H 0.098 0.902 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.037 17.632 3.435 28.431 hybrid contribution 0.818 0.360 0.759 1.173 sum -21.219 17.992 4.194 28.134 Atomic orbital electron populations 1.22885 0.79752 1.03491 1.00853 1.87938 1.21264 1.28864 1.95599 1.22730 0.91986 0.84939 1.02065 1.22818 0.93859 0.98758 0.86693 1.87922 1.21447 1.82327 1.39157 1.22432 0.81404 0.95150 0.99280 0.90732 1.21943 0.94930 0.97500 1.02446 1.21957 0.96125 0.97799 1.00931 1.21716 0.96868 0.84619 0.98783 1.57765 1.15968 1.30728 1.79175 1.04744 0.72687 0.73092 0.78290 1.93462 1.61295 1.56019 1.87196 1.93516 1.53070 1.85829 1.65366 1.30202 1.10567 1.06521 1.22891 1.18766 0.95735 0.91725 0.97156 1.20450 0.89833 1.31312 1.13720 0.95544 1.25980 0.94245 0.97501 0.99634 1.70069 0.98616 1.44872 1.44378 0.85946 0.79778 0.79567 0.79001 1.18773 1.21913 1.13595 1.23102 0.97579 0.96490 1.04165 1.23092 1.02512 1.03721 0.91108 1.21336 0.78711 0.98862 1.01473 0.92639 0.93396 0.89398 0.89484 0.92115 0.92547 0.89206 0.90848 0.89506 0.90859 0.87825 0.90095 0.89902 0.84755 0.83025 0.92185 0.87176 0.90211 0.90100 0.86347 0.90166 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.20 10.67 -144.34 -1.54 -9.74 16 3 C 0.06 0.80 6.32 71.98 0.45 1.25 16 4 C 0.06 0.80 6.13 71.98 0.44 1.24 16 5 O -0.39 -7.98 9.96 -144.34 -1.44 -9.42 16 6 C 0.08 1.49 2.76 30.67 0.08 1.57 16 7 H 0.07 1.30 7.79 -2.39 -0.02 1.28 16 8 C -0.13 -1.97 5.50 30.63 0.17 -1.80 16 9 C -0.13 -2.11 6.09 30.69 0.19 -1.92 16 10 C 0.10 2.52 6.31 86.36 0.54 3.06 16 11 N -1.00 -28.94 3.22 -513.05 -1.65 -30.59 16 12 S 2.61 104.89 5.15 -56.49 -0.29 104.60 16 13 O -0.99 -43.63 16.72 -127.65 -2.13 -45.76 16 14 O -0.99 -49.17 16.38 -127.65 -2.09 -51.26 16 15 C -0.57 -20.81 5.65 71.98 0.41 -20.41 16 16 C -0.03 -1.40 0.79 -52.93 -0.04 -1.45 16 17 C -0.52 -29.99 8.76 25.60 0.22 -29.76 16 18 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 19 C 0.03 1.48 5.47 84.66 0.46 1.94 16 20 N -0.94 -59.73 13.96 21.45 0.30 -59.43 16 21 Si 0.94 41.77 24.96 68.60 1.71 43.48 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 24 H -0.21 -8.00 5.68 99.48 0.57 -7.43 16 25 C -0.18 -7.07 9.96 30.62 0.30 -6.77 16 26 C -0.17 -6.30 7.67 30.62 0.23 -6.07 16 27 C 0.12 3.08 5.97 86.36 0.52 3.59 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.85 8.09 -2.39 -0.02 0.83 16 34 H 0.09 0.82 7.86 -2.39 -0.02 0.80 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 0.96 7.86 -2.38 -0.02 0.94 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 2.22 7.10 -2.39 -0.02 2.20 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.13 4.69 6.53 -2.39 -0.02 4.67 16 42 H 0.15 4.05 8.09 -2.39 -0.02 4.03 16 43 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 44 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 45 H 0.08 3.40 8.14 -2.38 -0.02 3.38 16 46 H 0.08 3.28 7.34 -2.39 -0.02 3.26 16 47 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.09 2.35 7.09 -2.39 -0.02 2.34 16 Total: -1.00 -82.81 399.28 -1.13 -83.94 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.77 Total: 28.11 kcal Atomic # 6 Polarization: -59.17 SS G_CDS: 5.24 Total: -53.94 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -1.35 Total: -90.02 kcal Atomic # 8 Polarization: -108.98 SS G_CDS: -7.20 Total: -116.18 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.71 Total: 43.48 kcal Atomic # 16 Polarization: 104.89 SS G_CDS: -0.29 Total: 104.60 kcal Total: -82.81 -1.13 -83.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451503721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.611 kcal (2) G-P(sol) polarization free energy of solvation -82.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds