Wall clock time and date at job start Wed Apr 1 2020 04:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00122 * 2 1 4 4 C 1.53003 * 109.47274 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47188 * 64.99995 * 4 3 2 6 6 C 1.36876 * 120.00177 * 270.00367 * 5 4 3 7 7 H 1.07998 * 120.00287 * 129.36193 * 6 5 4 8 8 C 1.39051 * 119.99860 * 309.36361 * 6 5 4 9 9 N 1.31359 * 120.00190 * 180.90703 * 8 6 5 10 10 Si 1.86807 * 119.99827 * 0.90830 * 8 6 5 11 11 H 1.48494 * 109.47219 * 93.88818 * 10 8 6 12 12 H 1.48501 * 109.47036 * 213.88657 * 10 8 6 13 13 H 1.48496 * 109.46967 * 333.88238 * 10 8 6 14 14 C 1.34773 * 120.00340 * 89.99821 * 5 4 3 15 15 O 1.21592 * 119.99948 * 0.90350 * 14 5 4 16 16 C 1.47739 * 120.00466 * 180.89747 * 14 5 4 17 17 C 1.39686 * 120.11975 * 330.05021 * 16 14 5 18 18 C 1.37954 * 119.98917 * 180.02562 * 17 16 14 19 19 C 1.38269 * 120.22993 * 359.72367 * 18 17 16 20 20 C 1.38963 * 120.23498 * 0.54795 * 19 18 17 21 21 N 1.39978 * 119.99381 * 179.72683 * 20 19 18 22 22 C 1.34775 * 119.99490 * 215.40434 * 21 20 19 23 23 O 1.21587 * 120.00216 * 356.63439 * 22 21 20 24 24 N 1.34777 * 119.99554 * 176.62773 * 22 21 20 25 25 C 1.46505 * 119.99789 * 179.97438 * 24 22 21 26 26 C 1.53003 * 117.50007 * 223.47511 * 25 24 22 27 27 C 1.53002 * 117.49733 * 154.81458 * 25 24 22 28 28 C 1.38605 * 120.00677 * 359.45158 * 20 19 18 29 29 H 1.09000 * 109.47258 * 59.99715 * 1 2 3 30 30 H 1.09001 * 109.47409 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46666 * 299.99903 * 1 2 3 32 32 H 1.09000 * 109.47225 * 60.00355 * 3 2 1 33 33 H 1.09001 * 109.47101 * 300.00187 * 3 2 1 34 34 H 1.09001 * 109.46691 * 305.00110 * 4 3 2 35 35 H 1.08999 * 109.47076 * 184.99911 * 4 3 2 36 36 H 0.96999 * 119.99789 * 180.02562 * 9 8 6 37 37 H 1.08003 * 120.00449 * 359.97438 * 17 16 14 38 38 H 1.08010 * 119.88353 * 180.02562 * 18 17 16 39 39 H 1.07996 * 119.88368 * 180.29541 * 19 18 17 40 40 H 0.96996 * 120.00239 * 35.40182 * 21 20 19 41 41 H 0.97002 * 120.00639 * 359.72948 * 24 22 21 42 42 H 1.09004 * 115.55085 * 9.14808 * 25 24 22 43 43 H 1.08998 * 117.49921 * 0.02562 * 26 25 24 44 44 H 1.08995 * 117.49707 * 145.02141 * 26 25 24 45 45 H 1.09001 * 117.50088 * 214.97956 * 27 25 24 46 46 H 1.09002 * 117.49844 * 359.97438 * 27 25 24 47 47 H 1.07993 * 120.11261 * 180.24660 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7964 -1.3369 7 1 3.6322 -1.3304 -2.1526 8 6 4.8176 -1.4913 -0.3720 9 7 4.9487 -2.7952 -0.4625 10 14 5.5995 -0.5705 1.0529 11 1 4.6742 -0.5776 2.2143 12 1 6.8735 -1.2333 1.4310 13 1 5.8726 0.8313 0.6461 14 6 4.2615 1.3336 -2.3218 15 8 4.1698 2.5435 -2.2422 16 6 4.6863 0.7070 -3.5904 17 6 5.3812 -0.5047 -3.5755 18 6 5.7771 -1.0872 -4.7617 19 6 5.4836 -0.4786 -5.9681 20 6 4.7978 0.7297 -5.9937 21 7 4.5083 1.3442 -7.2177 22 6 4.5277 2.6881 -7.3181 23 8 4.7363 3.3685 -6.3322 24 7 4.3161 3.2777 -8.5114 25 6 4.3366 4.7385 -8.6206 26 6 3.2431 5.3995 -9.4623 27 6 4.6809 5.3403 -9.9845 28 6 4.3953 1.3236 -4.8078 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5681 0.8409 35 1 3.9785 2.1765 0.0889 36 1 5.4513 -3.2799 0.2108 37 1 5.6091 -0.9850 -2.6354 38 1 6.3139 -2.0243 -4.7482 39 1 5.7920 -0.9420 -6.8936 40 1 4.2939 0.8029 -7.9934 41 1 4.1537 2.7348 -9.2987 42 1 4.6806 5.2714 -7.7341 43 1 2.5083 4.7476 -9.9345 44 1 2.8681 6.3674 -9.1297 45 1 5.2510 6.2692 -9.9954 46 1 4.8925 4.6493 -10.8005 47 1 3.8587 2.2606 -4.8259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457187580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:23 Heat of formation + Delta-G solvation = -20.036000 kcal Electronic energy + Delta-G solvation = -30777.473818 eV Core-core repulsion = 26541.925117 eV Total energy + Delta-G solvation = -4235.548701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.52836 -39.33410 -38.10952 -37.21621 -36.78502 -34.88436 -34.41693 -32.85326 -32.01819 -30.68098 -29.44384 -28.44028 -25.87288 -24.97472 -23.54259 -23.13148 -22.69587 -21.87928 -21.50625 -20.74001 -19.33623 -18.51506 -17.81903 -16.86021 -16.39466 -15.89930 -15.75223 -15.60227 -15.21281 -15.13453 -14.84671 -14.68639 -14.44429 -14.35288 -13.81246 -13.65663 -13.37116 -13.11047 -12.90633 -12.60675 -12.53108 -12.19901 -11.91619 -11.84787 -11.64532 -11.57818 -11.42995 -11.05908 -11.00987 -10.83652 -10.80630 -10.78717 -10.17445 -10.06028 -9.78602 -9.70577 -9.09448 -9.05167 -8.96011 -8.60011 -8.23459 -7.68147 -7.55053 -6.35941 -4.09364 1.67257 2.01856 2.49020 3.07509 3.13473 3.26171 3.29250 3.68442 3.81831 3.99408 4.17199 4.32227 4.45455 4.49428 4.65959 4.68344 4.71093 5.03240 5.30193 5.41890 5.48686 5.55357 5.59228 5.63028 5.66147 5.75499 5.76487 5.84536 5.93791 5.96628 6.03633 6.05259 6.09184 6.19684 6.27564 6.34988 6.42791 6.54423 6.66354 6.93960 7.01812 7.22149 7.38971 7.46381 7.69446 7.78307 7.89096 8.12512 8.34156 8.55000 9.00291 9.34203 9.69073 10.71298 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.002978 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.755812 B = 9399.828363 C =10358.053855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.054 3.946 4 C 0.104 3.896 5 N -0.458 5.458 6 C -0.320 4.320 7 H 0.105 0.895 8 C 0.067 3.933 9 N -0.868 5.868 10 Si 0.881 3.119 11 H -0.273 1.273 12 H -0.290 1.290 13 H -0.261 1.261 14 C 0.530 3.470 15 O -0.588 6.588 16 C -0.089 4.089 17 C -0.069 4.069 18 C -0.125 4.125 19 C -0.133 4.133 20 C 0.125 3.875 21 N -0.681 5.681 22 C 0.702 3.298 23 O -0.559 6.559 24 N -0.718 5.718 25 C 0.103 3.897 26 C -0.197 4.197 27 C -0.192 4.192 28 C -0.073 4.073 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.274 0.726 37 H 0.174 0.826 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.402 0.598 41 H 0.396 0.604 42 H 0.141 0.859 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.879 6.575 -14.771 16.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.024 4.024 4 C -0.019 4.019 5 N -0.178 5.178 6 C -0.447 4.447 7 H 0.123 0.877 8 C -0.139 4.139 9 N -0.504 5.504 10 Si 0.709 3.291 11 H -0.200 1.200 12 H -0.218 1.218 13 H -0.186 1.186 14 C 0.320 3.680 15 O -0.472 6.472 16 C -0.092 4.092 17 C -0.087 4.087 18 C -0.143 4.143 19 C -0.154 4.154 20 C 0.032 3.968 21 N -0.329 5.329 22 C 0.402 3.598 23 O -0.434 6.434 24 N -0.372 5.372 25 C -0.004 4.004 26 C -0.235 4.235 27 C -0.231 4.231 28 C -0.094 4.094 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.191 0.809 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.236 0.764 41 H 0.230 0.770 42 H 0.159 0.841 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.114 0.886 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.547 7.470 -13.703 15.813 hybrid contribution -0.242 -0.154 -0.088 0.300 sum -2.789 7.316 -13.791 15.858 Atomic orbital electron populations 1.22660 0.82985 1.02067 0.98819 1.88179 1.17742 1.26827 1.95042 1.22910 0.95050 0.85106 0.99360 1.21778 0.91953 0.98920 0.89259 1.43472 1.58278 1.07071 1.08999 1.18956 1.32149 0.79473 1.14160 0.87718 1.25393 0.95285 0.95316 0.97952 1.69612 1.39310 1.06357 1.35086 0.86860 0.78642 0.80766 0.82810 1.19972 1.21755 1.18585 1.18357 0.79085 0.85832 0.84712 1.90652 1.57494 1.14207 1.84896 1.19763 1.00919 0.95768 0.92797 1.22609 0.92783 0.92616 1.00719 1.20964 1.01314 1.00394 0.91674 1.20874 1.00064 0.95902 0.98593 1.17178 1.01098 0.94493 0.84052 1.42404 1.73489 1.04959 1.12054 1.15904 0.78213 0.82011 0.83662 1.91028 1.54517 1.62546 1.35315 1.44445 1.77420 1.06096 1.09201 1.21440 1.02681 0.79801 0.96448 1.23467 0.92317 1.03180 1.04586 1.23413 0.98730 1.03372 0.97556 1.21223 0.98506 0.99892 0.89801 0.94859 0.90100 0.95147 0.93852 0.93268 0.91484 0.89545 0.91520 0.80892 0.85757 0.86626 0.76359 0.77041 0.84142 0.88590 0.87937 0.87846 0.88598 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.65 10.18 -35.23 -0.36 -8.00 16 3 C 0.05 1.08 6.28 37.16 0.23 1.31 16 4 C 0.10 2.35 4.13 -4.04 -0.02 2.33 16 5 N -0.46 -11.31 2.08 -115.93 -0.24 -11.55 16 6 C -0.32 -8.21 5.87 -15.00 -0.09 -8.30 16 7 H 0.11 2.89 7.19 -52.49 -0.38 2.52 16 8 C 0.07 1.74 4.99 -17.45 -0.09 1.65 16 9 N -0.87 -23.30 13.95 55.50 0.77 -22.52 16 10 Si 0.88 20.64 24.71 -169.99 -4.20 16.44 16 11 H -0.27 -6.29 7.04 56.52 0.40 -5.89 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.26 -6.15 6.45 56.52 0.36 -5.79 16 14 C 0.53 13.34 7.43 -12.38 -0.09 13.25 16 15 O -0.59 -15.86 16.28 5.28 0.09 -15.78 16 16 C -0.09 -2.03 5.57 -104.99 -0.59 -2.62 16 17 C -0.07 -1.46 8.01 -39.14 -0.31 -1.78 16 18 C -0.12 -2.19 10.02 -39.67 -0.40 -2.59 16 19 C -0.13 -2.07 9.96 -39.30 -0.39 -2.46 16 20 C 0.12 2.14 6.28 -83.73 -0.53 1.61 16 21 N -0.68 -9.01 5.34 -14.26 -0.08 -9.09 16 22 C 0.70 10.35 8.39 -86.92 -0.73 9.62 16 23 O -0.56 -11.13 13.41 5.29 0.07 -11.06 16 24 N -0.72 -7.31 5.57 -58.67 -0.33 -7.64 16 25 C 0.10 1.01 6.43 -67.92 -0.44 0.58 16 26 C -0.20 -1.46 10.46 -26.69 -0.28 -1.74 16 27 C -0.19 -1.32 10.46 -26.69 -0.28 -1.59 16 28 C -0.07 -1.54 8.23 -38.96 -0.32 -1.86 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.54 3.36 -51.93 -0.17 1.37 16 35 H 0.09 1.90 7.41 -51.93 -0.38 1.52 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 37 H 0.17 4.08 4.97 -52.48 -0.26 3.81 16 38 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 39 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.40 3.56 8.84 -40.82 -0.36 3.20 16 41 H 0.40 2.64 8.84 -40.82 -0.36 2.28 16 42 H 0.14 1.68 7.40 -51.93 -0.38 1.30 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.14 3.21 6.17 -52.49 -0.32 2.89 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -33.77 387.53 -8.08 -41.85 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -6.45 Total: 12.47 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -3.20 Total: 9.04 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.13 Total: -50.80 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.20 Total: -34.84 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.20 Total: 16.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.77 -8.08 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457187580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.817 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds