Wall clock time and date at job start Wed Apr 1 2020 04:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00122 * 2 1 4 4 C 1.53003 * 109.47274 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47188 * 64.99995 * 4 3 2 6 6 C 1.36876 * 120.00177 * 270.00367 * 5 4 3 7 7 H 1.07998 * 120.00287 * 129.36193 * 6 5 4 8 8 C 1.39051 * 119.99860 * 309.36361 * 6 5 4 9 9 N 1.31359 * 120.00190 * 180.90703 * 8 6 5 10 10 Si 1.86807 * 119.99827 * 0.90830 * 8 6 5 11 11 H 1.48494 * 109.47219 * 93.88818 * 10 8 6 12 12 H 1.48501 * 109.47036 * 213.88657 * 10 8 6 13 13 H 1.48496 * 109.46967 * 333.88238 * 10 8 6 14 14 C 1.34773 * 120.00340 * 89.99821 * 5 4 3 15 15 O 1.21592 * 119.99948 * 0.90350 * 14 5 4 16 16 C 1.47739 * 120.00466 * 180.89747 * 14 5 4 17 17 C 1.39686 * 120.11975 * 330.05021 * 16 14 5 18 18 C 1.37954 * 119.98917 * 180.02562 * 17 16 14 19 19 C 1.38269 * 120.22993 * 359.72367 * 18 17 16 20 20 C 1.38963 * 120.23498 * 0.54795 * 19 18 17 21 21 N 1.39978 * 119.99381 * 179.72683 * 20 19 18 22 22 C 1.34775 * 119.99490 * 215.40434 * 21 20 19 23 23 O 1.21587 * 120.00216 * 356.63439 * 22 21 20 24 24 N 1.34777 * 119.99554 * 176.62773 * 22 21 20 25 25 C 1.46505 * 119.99789 * 179.97438 * 24 22 21 26 26 C 1.53003 * 117.50007 * 223.47511 * 25 24 22 27 27 C 1.53002 * 117.49733 * 154.81458 * 25 24 22 28 28 C 1.38605 * 120.00677 * 359.45158 * 20 19 18 29 29 H 1.09000 * 109.47258 * 59.99715 * 1 2 3 30 30 H 1.09001 * 109.47409 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46666 * 299.99903 * 1 2 3 32 32 H 1.09000 * 109.47225 * 60.00355 * 3 2 1 33 33 H 1.09001 * 109.47101 * 300.00187 * 3 2 1 34 34 H 1.09001 * 109.46691 * 305.00110 * 4 3 2 35 35 H 1.08999 * 109.47076 * 184.99911 * 4 3 2 36 36 H 0.96999 * 119.99789 * 180.02562 * 9 8 6 37 37 H 1.08003 * 120.00449 * 359.97438 * 17 16 14 38 38 H 1.08010 * 119.88353 * 180.02562 * 18 17 16 39 39 H 1.07996 * 119.88368 * 180.29541 * 19 18 17 40 40 H 0.96996 * 120.00239 * 35.40182 * 21 20 19 41 41 H 0.97002 * 120.00639 * 359.72948 * 24 22 21 42 42 H 1.09004 * 115.55085 * 9.14808 * 25 24 22 43 43 H 1.08998 * 117.49921 * 0.02562 * 26 25 24 44 44 H 1.08995 * 117.49707 * 145.02141 * 26 25 24 45 45 H 1.09001 * 117.50088 * 214.97956 * 27 25 24 46 46 H 1.09002 * 117.49844 * 359.97438 * 27 25 24 47 47 H 1.07993 * 120.11261 * 180.24660 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0967 -0.7964 -1.3369 7 1 3.6322 -1.3304 -2.1526 8 6 4.8176 -1.4913 -0.3720 9 7 4.9487 -2.7952 -0.4625 10 14 5.5995 -0.5705 1.0529 11 1 4.6742 -0.5776 2.2143 12 1 6.8735 -1.2333 1.4310 13 1 5.8726 0.8313 0.6461 14 6 4.2615 1.3336 -2.3218 15 8 4.1698 2.5435 -2.2422 16 6 4.6863 0.7070 -3.5904 17 6 5.3812 -0.5047 -3.5755 18 6 5.7771 -1.0872 -4.7617 19 6 5.4836 -0.4786 -5.9681 20 6 4.7978 0.7297 -5.9937 21 7 4.5083 1.3442 -7.2177 22 6 4.5277 2.6881 -7.3181 23 8 4.7363 3.3685 -6.3322 24 7 4.3161 3.2777 -8.5114 25 6 4.3366 4.7385 -8.6206 26 6 3.2431 5.3995 -9.4623 27 6 4.6809 5.3403 -9.9845 28 6 4.3953 1.3236 -4.8078 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5681 0.8409 35 1 3.9785 2.1765 0.0889 36 1 5.4513 -3.2799 0.2108 37 1 5.6091 -0.9850 -2.6354 38 1 6.3139 -2.0243 -4.7482 39 1 5.7920 -0.9420 -6.8936 40 1 4.2939 0.8029 -7.9934 41 1 4.1537 2.7348 -9.2987 42 1 4.6806 5.2714 -7.7341 43 1 2.5083 4.7476 -9.9345 44 1 2.8681 6.3674 -9.1297 45 1 5.2510 6.2692 -9.9954 46 1 4.8925 4.6493 -10.8005 47 1 3.8587 2.2606 -4.8259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457187580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:21 Heat of formation + Delta-G solvation = -45.029585 kcal Electronic energy + Delta-G solvation = -30778.557621 eV Core-core repulsion = 26541.925117 eV Total energy + Delta-G solvation = -4236.632504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.79166 -41.03514 -39.43574 -38.60151 -38.00282 -36.82684 -35.75895 -34.01295 -33.82283 -32.26796 -31.03043 -29.88757 -27.29930 -26.92686 -25.07548 -24.39656 -23.51358 -23.25518 -22.58590 -21.90984 -21.10426 -19.82876 -19.36896 -18.46713 -17.75267 -17.53608 -17.13773 -17.06866 -16.69825 -16.48534 -16.29359 -16.16537 -15.80023 -15.62313 -15.42479 -15.18991 -14.91557 -14.54830 -14.44264 -14.24016 -13.75636 -13.66038 -13.53283 -13.30761 -13.12405 -12.71628 -12.63642 -12.55025 -12.47513 -12.35444 -12.33106 -12.00705 -11.57125 -11.48982 -11.42590 -11.22329 -10.94030 -10.66889 -10.47520 -9.83452 -9.80686 -9.58762 -8.97391 -8.37440 -6.12066 0.12990 0.51630 1.23939 1.33355 1.40163 1.45526 1.86703 2.09034 2.22970 2.50989 2.87671 2.94510 3.02153 3.11464 3.18383 3.81059 3.91495 4.05611 4.07710 4.08877 4.11000 4.12617 4.32714 4.34489 4.49157 4.51441 4.56435 4.58258 4.63022 4.69263 4.70388 4.77889 4.79229 4.81590 5.02762 5.10202 5.22566 5.30691 5.48175 5.50748 5.55416 5.68793 5.79648 5.93470 6.11843 6.15968 6.27817 6.33556 6.97151 6.99984 7.35071 7.46942 7.72430 8.72546 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.002978 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.755812 B = 9399.828363 C =10358.053855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.061 3.939 4 C 0.094 3.906 5 N -0.462 5.462 6 C -0.304 4.304 7 H 0.078 0.922 8 C 0.037 3.963 9 N -0.896 5.896 10 Si 0.923 3.077 11 H -0.262 1.262 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.519 3.481 15 O -0.618 6.618 16 C -0.121 4.121 17 C -0.087 4.087 18 C -0.117 4.117 19 C -0.106 4.106 20 C 0.136 3.864 21 N -0.664 5.664 22 C 0.696 3.304 23 O -0.617 6.617 24 N -0.694 5.694 25 C 0.064 3.936 26 C -0.185 4.185 27 C -0.165 4.165 28 C -0.091 4.091 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.278 0.722 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.427 0.573 41 H 0.417 0.583 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 6.049 -17.516 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.017 4.017 4 C -0.029 4.029 5 N -0.182 5.182 6 C -0.432 4.432 7 H 0.096 0.904 8 C -0.167 4.167 9 N -0.533 5.533 10 Si 0.750 3.250 11 H -0.188 1.188 12 H -0.212 1.212 13 H -0.194 1.194 14 C 0.311 3.689 15 O -0.505 6.505 16 C -0.124 4.124 17 C -0.106 4.106 18 C -0.136 4.136 19 C -0.127 4.127 20 C 0.041 3.959 21 N -0.314 5.314 22 C 0.396 3.604 23 O -0.496 6.496 24 N -0.349 5.349 25 C -0.043 4.043 26 C -0.224 4.224 27 C -0.203 4.203 28 C -0.113 4.113 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.163 0.837 38 H 0.171 0.829 39 H 0.189 0.811 40 H 0.267 0.733 41 H 0.254 0.746 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.640 6.920 -16.524 18.108 hybrid contribution -0.273 0.064 0.596 0.658 sum -2.913 6.984 -15.929 17.635 Atomic orbital electron populations 1.22885 0.80357 1.03355 1.00391 1.88107 1.20731 1.27365 1.95353 1.22799 0.93151 0.85197 1.00548 1.21927 0.94174 0.98611 0.88169 1.43551 1.58243 1.06746 1.09665 1.18581 1.31634 0.79659 1.13354 0.90424 1.25764 0.95601 0.95760 0.99554 1.69664 1.40414 1.07215 1.36044 0.86190 0.78349 0.79387 0.81061 1.18806 1.21212 1.19413 1.18898 0.78579 0.85662 0.85791 1.90600 1.58987 1.15377 1.85578 1.19699 1.03252 0.97130 0.92307 1.22328 0.94367 0.92530 1.01384 1.21270 1.00398 1.00963 0.90946 1.21311 0.97163 0.94296 0.99913 1.17239 0.99824 0.94695 0.84137 1.42151 1.72930 1.04768 1.11570 1.16158 0.77939 0.82137 0.84132 1.91011 1.57063 1.63856 1.37711 1.44188 1.75827 1.06508 1.08347 1.21470 1.06245 0.79344 0.97215 1.23541 0.92787 1.03028 1.03040 1.23505 0.97986 1.03411 0.95405 1.21073 0.99806 0.99316 0.91117 0.94326 0.89044 0.92426 0.90106 0.94430 0.91689 0.89520 0.91159 0.83657 0.82897 0.81102 0.73311 0.74550 0.87379 0.87287 0.87674 0.87013 0.86557 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.06 16 2 O -0.40 -16.91 10.18 -148.98 -1.52 -18.42 16 3 C 0.06 2.46 6.28 71.98 0.45 2.91 16 4 C 0.09 4.35 4.13 86.38 0.36 4.70 16 5 N -0.46 -23.89 2.08 -638.94 -1.33 -25.22 16 6 C -0.30 -16.28 5.87 84.10 0.49 -15.79 16 7 H 0.08 4.54 7.19 -2.91 -0.02 4.52 16 8 C 0.04 1.98 4.99 84.96 0.42 2.40 16 9 N -0.90 -49.02 13.95 21.68 0.30 -48.71 16 10 Si 0.92 43.10 24.71 68.60 1.69 44.80 16 11 H -0.26 -11.71 7.04 99.48 0.70 -11.01 16 12 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.81 6.45 99.48 0.64 -12.17 16 14 C 0.52 27.74 7.43 86.76 0.64 28.39 16 15 O -0.62 -35.54 16.28 -4.01 -0.07 -35.61 16 16 C -0.12 -5.79 5.57 -20.10 -0.11 -5.91 16 17 C -0.09 -3.82 8.01 22.55 0.18 -3.64 16 18 C -0.12 -3.92 10.02 22.21 0.22 -3.69 16 19 C -0.11 -2.94 9.96 22.45 0.22 -2.72 16 20 C 0.14 4.48 6.28 38.10 0.24 4.72 16 21 N -0.66 -16.19 5.34 -317.28 -1.69 -17.88 16 22 C 0.70 20.21 8.39 179.05 1.50 21.71 16 23 O -0.62 -25.71 13.41 -3.99 -0.05 -25.76 16 24 N -0.69 -13.02 5.57 -457.79 -2.55 -15.57 16 25 C 0.06 1.20 6.43 44.99 0.29 1.49 16 26 C -0.19 -2.36 10.46 30.62 0.32 -2.04 16 27 C -0.16 -1.80 10.46 30.62 0.32 -1.48 16 28 C -0.09 -4.03 8.23 22.67 0.19 -3.84 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 3.02 3.36 -2.39 -0.01 3.01 16 35 H 0.09 3.95 7.41 -2.39 -0.02 3.93 16 36 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.15 7.18 4.97 -2.91 -0.01 7.17 16 38 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 40 H 0.43 5.90 8.84 -92.71 -0.82 5.08 16 41 H 0.42 4.20 8.84 -92.71 -0.82 3.38 16 42 H 0.11 2.77 7.40 -2.38 -0.02 2.76 16 43 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.11 5.45 6.17 -2.91 -0.02 5.43 16 Total: -1.00 -80.18 387.53 1.10 -79.08 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.68 Total: 34.03 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 6.99 Total: 29.27 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -5.27 Total: -107.39 kcal Atomic # 8 Polarization: -78.16 SS G_CDS: -1.63 Total: -79.79 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.69 Total: 44.80 kcal Total: -80.18 1.10 -79.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457187580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.051 kcal (2) G-P(sol) polarization free energy of solvation -80.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds